RchiOBHm_Chr6g0293851

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0022801
Physical Location & Seq
Forward (+)
56356355 .. 56357185
831 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26369

Sequence Viewer

Length: 270 bp
ATGAAGTTGCTTTCTTTATGCAGAAGATCCAGTACTCCAGTAGCAGACCTGAAGAAGATAGCTCTTCGAGTTGTAGACAAGGCCAAGAAAATTTGCGTCAGCAAGTTGGTGACTGATGTGGTGGTTGCTGGGGGTGCTAGGGATGTTTTCTGTAAGGCTGTAGAGAGACACAAGGCATCCATATTAGTTTCTGGTAGCCATGGCTATGGAGTTATCAAAAGAGCTGTTTTGGGTAGCGTAAGTGATTACTGTGCTCATCGTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

89

Amino Acids

9.55

Weight (kDa)

10.04

Isoelectric Point (pI)

22.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 35 - 89 5.4e-10 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022801)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293851
rosa_rugosa Rorug06G0238300
rosa_samantha Rh6DG352700
rosa_wichuraiana Rw6G030620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AclWI GGATC 1 cut(s) 21
AcsI RAATTY 1 cut(s) 90
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 34
AluBI AGCT 2 cut(s) 62, 224
AluI AGCT 2 cut(s) 62, 224
Alw21I GWGCWC 2 cut(s) 256, 265
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 1 cut(s) 21
AoxI GGCC 1 cut(s) 81
ApoI RAATTY 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 121
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
Bbv12I GWGCWC 2 cut(s) 256, 265
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 159
BmcAI AGTACT 1 cut(s) 34
BmsI GCATC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 30, 38
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 2 cut(s) 148, 176
BseNI ACTGG 2 cut(s) 30, 38
BseYI CCCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 256, 265
BsmAI GTCTC 1 cut(s) 160
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 256, 265
Bsp143I GATC 1 cut(s) 26
Bsp19I CCATGG 1 cut(s) 199
BspANI GGCC 1 cut(s) 83
BspPI GGATC 1 cut(s) 21
BspQI GCTCTTC 1 cut(s) 69
BsrI ACTGG 2 cut(s) 30, 38
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 2 cut(s) 148, 176
BstKTI GATC 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 26
BstMWI GCNNNNNNNGC 2 cut(s) 134, 260
BstSFI CTRYAG 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 26
BstXI CCANNNNNNTGG 1 cut(s) 206
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 2 cut(s) 148, 176
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 33
CviAII CATG 1 cut(s) 200
CviJI RGCY 6 cut(s) 62, 83, 158, 198, 204, 224
CviKI_1 RGCY 6 cut(s) 62, 83, 158, 198, 204, 224
CviQI GTAC 1 cut(s) 33
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 19, 182, 201, 207
FatI CATG 1 cut(s) 199
FblI GTMKAC 1 cut(s) 75
FokI GGATG 2 cut(s) 155, 163
FspBI CTAG 1 cut(s) 138
GsaI CCCAGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 1 cut(s) 83
HgaI GACGC 1 cut(s) 85
Hin1II CATG 1 cut(s) 203
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 260
Hsp92II CATG 1 cut(s) 203
Kzo9I GATC 1 cut(s) 26
LguI GCTCTTC 1 cut(s) 69
LpnPI CCDG 5 cut(s) 43, 51, 62, 114, 177
LweI GCATC 1 cut(s) 185
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MboII GAAGA 4 cut(s) 36, 56, 64, 67
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 256, 265
MluCI AATT 1 cut(s) 90
MslI CAYNNNNRTG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 134, 260
NcoI CCATGG 1 cut(s) 199
NdeII GATC 1 cut(s) 26
NlaIII CATG 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 26
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 69
Sau3AI GATC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 34
SduI GDGCHC 2 cut(s) 256, 265
SetI ASST 3 cut(s) 51, 64, 226
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 67
TasI AATT 1 cut(s) 90
TatI WGTACW 1 cut(s) 32
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 90
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.