Rorug06G0238300

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0022801
Physical Location & Seq
Reverse (-)
38062639 .. 38062998
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0238300.1

Sequence Viewer

Length: 360 bp
ATGAGCTTCTGGAGCGATGAATATAACAAGCACGGAACTTGTTGCGACGATACCTTCACTCAGACGGTATACTTTGAAACAGCGCATAAGATGTGGAGCCACAATCACATCGAGGTCATGTTCAGCGAGGCTGGTTATAAACCAGGGAATAAATACAAGCCAGCTGATCTACAGGCAGCAGTAGCAAAGAAAATCACCAAGGATCCCGCGCTGCGTTGCGTTGATCTGCCAACTTTGGGTAGACTATTGCTGGAAGTGGTCATATGTTATGACCATGATCGAAAGAGTATTATCAACTGCAACTCCGATCTGTCAAAAAGCTGCACTGGTCCTGGAACTATTCTGTACAAGGATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

119

Amino Acids

13.5

Weight (kDa)

6.49

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 2 - 100 1.9e-19 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022801)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293851
rosa_rugosa Rorug06G0238300
rosa_samantha Rh6DG352700
rosa_wichuraiana Rw6G030620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AccI GTMKAC 2 cut(s) 69, 241
AccII CGCG 1 cut(s) 209
AciI CCGC 1 cut(s) 207
AclWI GGATC 2 cut(s) 197, 210
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 2 cut(s) 142, 331
AluBI AGCT 3 cut(s) 6, 164, 321
AluI AGCT 3 cut(s) 6, 164, 321
AlwI GGATC 2 cut(s) 197, 210
ApeKI GCWGC 3 cut(s) 176, 211, 321
AspLEI GCGC 2 cut(s) 85, 211
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 329
BamHI GGATCC 1 cut(s) 202
BbvI GCAGC 3 cut(s) 188, 198, 308
BciT130I CCWGG 2 cut(s) 144, 333
BfmI CTRYAG 2 cut(s) 170, 356
BisI GCNGC 3 cut(s) 177, 212, 322
BlsI GCNGC 3 cut(s) 178, 213, 323
Bme1390I CCNGG 2 cut(s) 144, 333
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 2 cut(s) 98, 204
BmrFI CCNGG 2 cut(s) 144, 333
BpmI CTGGAG 1 cut(s) 31
BsaJI CCNNGG 2 cut(s) 143, 198
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 2 cut(s) 144, 333
BseDI CCNNGG 2 cut(s) 143, 198
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 74
BseNI ACTGG 1 cut(s) 331
BseXI GCAGC 3 cut(s) 188, 198, 308
BsgI GTGCAG 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 236
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 6 cut(s) 166, 202, 223, 277, 307, 352
BspACI CCGC 1 cut(s) 207
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 98, 204
BspPI GGATC 2 cut(s) 197, 210
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 143, 198
BssMI GATC 6 cut(s) 166, 202, 223, 277, 307, 352
BssNAI GTATAC 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 198
Bst1107I GTATAC 1 cut(s) 70
Bst2UI CCWGG 2 cut(s) 144, 333
Bst4CI ACNGT 1 cut(s) 67
BstAUI TGTACA 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 60
BstFNI CGCG 1 cut(s) 209
BstHHI GCGC 2 cut(s) 85, 211
BstKTI GATC 6 cut(s) 169, 205, 226, 280, 310, 355
BstMBI GATC 6 cut(s) 166, 202, 223, 277, 307, 352
BstMWI GCNNNNNNNGC 2 cut(s) 12, 182
BstNI CCWGG 2 cut(s) 144, 333
BstSCI CCNGG 2 cut(s) 142, 331
BstSFI CTRYAG 2 cut(s) 170, 356
BstUI CGCG 1 cut(s) 209
BstV1I GCAGC 3 cut(s) 188, 198, 308
BstX2I RGATCY 2 cut(s) 202, 352
BstYI RGATCY 2 cut(s) 202, 352
BstZ17I GTATAC 1 cut(s) 70
BtgZI GCGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 2 cut(s) 85, 211
Cfr13I GGNCC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 118, 275
CviJI RGCY 6 cut(s) 6, 99, 131, 160, 164, 321
CviKI_1 RGCY 6 cut(s) 6, 99, 131, 160, 164, 321
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 1 cut(s) 60
DpnI GATC 6 cut(s) 168, 204, 225, 279, 309, 354
DpnII GATC 6 cut(s) 166, 202, 223, 277, 307, 352
Eco130I CCWWGG 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 329
EcoRII CCWGG 2 cut(s) 142, 331
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 121, 278
FaiI YATR 9 cut(s) 24, 70, 87, 119, 138, 263, 265, 270, 276
FatI CATG 2 cut(s) 117, 274
FauI CCCGC 1 cut(s) 214
FauNDI CATATG 1 cut(s) 263
FblI GTMKAC 2 cut(s) 69, 241
Fnu4HI GCNGC 3 cut(s) 177, 212, 322
Fsp4HI GCNGC 3 cut(s) 177, 212, 322
GlaI GCGC 2 cut(s) 84, 210
GluI GCNGC 3 cut(s) 177, 212, 322
GsuI CTGGAG 1 cut(s) 31
HhaI GCGC 2 cut(s) 85, 211
Hin1II CATG 2 cut(s) 121, 278
Hin6I GCGC 2 cut(s) 83, 209
HinP1I GCGC 2 cut(s) 83, 209
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 70, 242
Hpy188I TCNGA 2 cut(s) 63, 307
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 70, 242
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 300, 324
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 182
HpyF3I CTNAG 1 cut(s) 60
Hsp92II CATG 2 cut(s) 121, 278
HspAI GCGC 2 cut(s) 83, 209
Kzo9I GATC 6 cut(s) 166, 202, 223, 277, 307, 352
LmnI GCTCC 2 cut(s) 12, 96
LpnPI CCDG 9 cut(s) 117, 129, 156, 158, 174, 236, 312, 318, 345
Lsp1109I GCAGC 3 cut(s) 188, 198, 308
MalI GATC 6 cut(s) 168, 204, 225, 279, 309, 354
MboI GATC 6 cut(s) 166, 202, 223, 277, 307, 352
MflI RGATCY 2 cut(s) 202, 352
MnlI CCTC 2 cut(s) 106, 121
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 2 cut(s) 144, 333
MvaI CCWGG 2 cut(s) 144, 333
MvnI CGCG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 12, 182
NdeI CATATG 1 cut(s) 263
NdeII GATC 6 cut(s) 166, 202, 223, 277, 307, 352
NlaIII CATG 2 cut(s) 121, 278
NlaIV GGNNCC 2 cut(s) 98, 204
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 3 cut(s) 178, 213, 323
PsiI TTATAA 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 142, 331
PspGI CCWGG 2 cut(s) 142, 331
PspN4I GGNNCC 2 cut(s) 98, 204
PspPI GGNCC 1 cut(s) 329
PsuI RGATCY 2 cut(s) 202, 352
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SatI GCNGC 3 cut(s) 177, 212, 322
Sau3AI GATC 6 cut(s) 166, 202, 223, 277, 307, 352
Sau96I GGNCC 1 cut(s) 329
ScrFI CCNGG 2 cut(s) 144, 333
SetI ASST 5 cut(s) 8, 56, 117, 166, 323
SfcI CTRYAG 2 cut(s) 170, 356
SinI GGWCC 1 cut(s) 329
SsiI CCGC 1 cut(s) 207
StyD4I CCNGG 2 cut(s) 142, 331
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 111, 280
TatI WGTACW 1 cut(s) 345
TscAI CASTG 1 cut(s) 331
TseI GCWGC 3 cut(s) 176, 211, 321
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 329
XmiI GTMKAC 2 cut(s) 69, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.