Rh6DG352700

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0022801
Physical Location & Seq
Forward (+)
55240195 .. 55240625
431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG352700.1

Sequence Viewer

Length: 267 bp
ATGGGGACCGGAAGTTTTGCCACTCTGGAGGCAGACCTGAAGAAGATAGCTCTTCGAGTTGTAGACAAGGCCAAGAAAATTTGCGTCAGCAAGTTGGTGACTGATGTGGTAGTGGAAGTGGTTGCTGGGGGTGCTAGGGATGTTTTCTGTGAGGCTGTAGAGAGACACAAGGCATCCATATTGGTTTCTGGTAGCCATGGCTATGGAGTTATCAAAAGAGCTGTTTTGGGTAGCGTAAGTGATTACTGTGCTCATCGTGCTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

88

Amino Acids

9.3

Weight (kDa)

9.15

Isoelectric Point (pI)

6.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 25 - 88 1.7e-11 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022801)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0293851
rosa_rugosa Rorug06G0238300
rosa_samantha Rh6DG352700
rosa_wichuraiana Rw6G030620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 59
AluBI AGCT 2 cut(s) 50, 221
AluI AGCT 2 cut(s) 50, 221
Alw21I GWGCWC 2 cut(s) 253, 262
Alw26I GTCTC 1 cut(s) 157
AoxI GGCC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 6
Bbv12I GWGCWC 2 cut(s) 253, 262
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 182
BpmI CTGGAG 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 8
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 2 cut(s) 145, 173
BseYI CCCAGC 1 cut(s) 125
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 253, 262
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 2 cut(s) 253, 262
Bsp19I CCATGG 1 cut(s) 196
BspANI GGCC 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 196
BssT1I CCWWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 2 cut(s) 145, 173
BstMAI GTCTC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 131, 257
BstSFI CTRYAG 1 cut(s) 156
BstXI CCANNNNNNTGG 1 cut(s) 203
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 196
BtsCI GGATG 2 cut(s) 145, 173
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 1 cut(s) 73
CviAII CATG 1 cut(s) 197
CviJI RGCY 6 cut(s) 50, 71, 155, 195, 201, 221
CviKI_1 RGCY 6 cut(s) 50, 71, 155, 195, 201, 221
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 179, 198, 204
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 63
FokI GGATG 2 cut(s) 152, 160
FspBI CTAG 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 73
Hin1II CATG 1 cut(s) 200
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 64
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 257
Hsp92II CATG 1 cut(s) 200
LguI GCTCTTC 1 cut(s) 57
LpnPI CCDG 5 cut(s) 11, 22, 50, 111, 174
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 3 cut(s) 44, 52, 55
MhlI GDGCHC 2 cut(s) 253, 262
MluCI AATT 1 cut(s) 78
MnlI CCTC 2 cut(s) 22, 145
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 131, 257
NcoI CCATGG 1 cut(s) 196
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 6
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 57
Sau96I GGNCC 1 cut(s) 6
SduI GDGCHC 2 cut(s) 253, 262
SetI ASST 3 cut(s) 39, 52, 223
SfaNI GCATC 1 cut(s) 182
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 1 cut(s) 78
SspMI CTAG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 1 cut(s) 248
TaqI TCGA 1 cut(s) 55
TasI AATT 1 cut(s) 78
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 6
XapI RAATTY 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.