RchiOBHm_Chr6g0298511

Coproporphyrinogen-III oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0021457
Physical Location & Seq
Reverse (-)
59897809 .. 59898630
822 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26798

Sequence Viewer

Length: 822 bp
ATGCCGCCACCAGCTACACTCTCATCTTCTTCCTCCTTCACCCTCCTCTCCCCATCTCCAAAGCTCGCATCTTTCCACTCCAAAACCCACTCCTTCAACTCCACCACGCGCTTCATGCGCCCCCGTTCCCCTCCCTCCATCACTCTGCAATGCGCCGTCATCGAGAAAGAGACGCCAGAGATGAAAAAATCTGAGACTTTCCTCCATGAGTTGTCGTCGTCGACCTCAATCCGGGCGCGGTTCGATAAGATGATACGGGAGGCGCCGGACACAATGTGTGAGGCCATCGCCATTTGGGAGAAGGCTGGGATTAATGTGTCTGTTGTGTATGGAGTTATGCCGCCTGAGGCTTATAGAGCTGCCAAGATCGCCGCCACTTATCACAAGCCCGGGCGGTGCTGTTCTTCGCTGCCGGAATTAGCTTTGAGATTGCTTGATTTATGCTCTAATTGTGAAAAAATGTCACCCCCACCGCTTCCTTCTTTATTATATTTAGGTCTTTCATGGCAGAAAAGGAAGAAAAAGAGGAGAGGAGGAGAGAGGTGGGTGGAGAAGGACAATGACAAAGTGTTTTTAAACCTATTGTACATATATATATTGTTTTTGTTTGCAATATACCTGTACCATGCAAGTGGTCTGGTGGTTGGGGCTTTCGTTTGCATATGCGTAAGGGGGGAGGGGGGGTTTCGAGTCTCTCTAACCTCAAAGTCCGGAATTTGTTTTGGATTTTTTCCATATTCAGTTGGCCATAGTCAATTTGGGAATTTCACTTCCGTGTGGACCCTACTTTTGATGAGTTGGAAATGTCATGTCAGCACTTAA

Protein Analysis

273

Amino Acids

30.54

Weight (kDa)

9.43

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021457)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0298511
rosa_samantha Rh1CG190200 Rh6BG399900 Rh7AG246400 Rh7CG262000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccI GTMKAC 1 cut(s) 221
AccII CGCG 2 cut(s) 109, 238
AccIII TCCGGA 1 cut(s) 710
AciI CCGC 6 cut(s) 5, 238, 341, 372, 394, 473
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 2 cut(s) 714, 763
AcyI GRCGYC 2 cut(s) 173, 263
AdeI CACNNNGTG 1 cut(s) 276
AfaI GTAC 2 cut(s) 587, 623
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 773
AluBI AGCT 4 cut(s) 14, 64, 359, 422
AluI AGCT 4 cut(s) 14, 64, 359, 422
Alw26I GTCTC 3 cut(s) 164, 188, 697
Ama87I CYCGRG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 710
AoxI GGCC 2 cut(s) 282, 745
ApeKI GCWGC 2 cut(s) 359, 409
ApoI RAATTY 2 cut(s) 714, 763
ArsI GACNNNNNNTTYG 2 cut(s) 772, 804
AseI ATTAAT 1 cut(s) 312
AspLEI GCGC 5 cut(s) 111, 120, 155, 238, 265
AspS9I GGNCC 1 cut(s) 780
AsuC2I CCSGG 3 cut(s) 233, 390, 391
AsuHPI GGTGA 2 cut(s) 31, 456
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 1 cut(s) 780
AxyI CCTNAGG 1 cut(s) 345
BalI TGGCCA 1 cut(s) 747
BanI GGYRCC 1 cut(s) 262
BbvI GCAGC 2 cut(s) 346, 396
BccI CCATC 3 cut(s) 61, 146, 293
BceAI ACGGC 1 cut(s) 140
BcnI CCSGG 3 cut(s) 233, 390, 391
BcoDI GTCTC 3 cut(s) 164, 188, 697
BfoI RGCGCY 1 cut(s) 266
BisI GCNGC 5 cut(s) 5, 341, 360, 372, 410
BlsI GCNGC 5 cut(s) 6, 342, 361, 373, 411
Bme1390I CCNGG 3 cut(s) 233, 390, 391
Bme18I GGWCC 1 cut(s) 780
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 780
BmiI GGNNCC 2 cut(s) 264, 782
BmrFI CCNGG 3 cut(s) 233, 390, 391
BmsI GCATC 1 cut(s) 77
BpuMI CCSGG 3 cut(s) 233, 390, 391
BsaHI GRCGYC 2 cut(s) 173, 263
BsaJI CCNNGG 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 710
BsaXI ACNNNNNCTCC 2 cut(s) 668, 698
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 155
BseAI TCCGGA 1 cut(s) 710
BseDI CCNNGG 1 cut(s) 389
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 2 cut(s) 183, 336
BseRI GAGGAG 4 cut(s) 35, 541, 546, 549
BseXI GCAGC 2 cut(s) 346, 396
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 2 cut(s) 109, 238
BshFI GGCC 2 cut(s) 284, 747
BshNI GGYRCC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 5 cut(s) 232, 266, 390, 413, 711
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 3 cut(s) 164, 188, 697
BsmBI CGTCTC 1 cut(s) 164
BsnI GGCC 2 cut(s) 284, 747
BsoBI CYCGRG 1 cut(s) 389
Bsp13I TCCGGA 1 cut(s) 710
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 1 cut(s) 366
BspACI CCGC 6 cut(s) 5, 238, 341, 372, 394, 473
BspANI GGCC 2 cut(s) 284, 747
BspCNI CTCAG 2 cut(s) 184, 337
BspEI TCCGGA 1 cut(s) 710
BspFNI CGCG 2 cut(s) 109, 238
BspLI GGNNCC 2 cut(s) 264, 782
BspT107I GGYRCC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 389
BssMI GATC 1 cut(s) 366
BssNI GRCGYC 2 cut(s) 173, 263
BstACI GRCGYC 2 cut(s) 173, 263
BstAUI TGTACA 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 2 cut(s) 192, 345
BstFNI CGCG 2 cut(s) 109, 238
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 5 cut(s) 111, 120, 155, 238, 265
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 3 cut(s) 164, 188, 697
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 4 cut(s) 115, 117, 356, 368
BstSCI CCNGG 3 cut(s) 231, 388, 389
BstUI CGCG 2 cut(s) 109, 238
BstV1I GCAGC 2 cut(s) 346, 396
BstXI CCANNNNNNTGG 1 cut(s) 632
Bsu36I CCTNAGG 1 cut(s) 345
BsuRI GGCC 2 cut(s) 284, 747
BtgZI GCGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 5 cut(s) 111, 120, 155, 238, 265
Cfr13I GGNCC 1 cut(s) 780
Cfr9I CCCGGG 1 cut(s) 389
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 586, 622
CviAII CATG 5 cut(s) 115, 206, 504, 626, 809
CviQI GTAC 2 cut(s) 586, 622
DdeI CTNAG 2 cut(s) 192, 345
DinI GGCGCC 1 cut(s) 264
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DraI TTTAAA 1 cut(s) 576
DraIII CACNNNGTG 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 780
Eco81I CCTNAGG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 389
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 5 cut(s) 118, 209, 507, 629, 812
FatI CATG 5 cut(s) 114, 205, 503, 625, 808
FauNDI CATATG 1 cut(s) 662
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 5 cut(s) 5, 341, 360, 372, 410
Fsp4HI GCNGC 5 cut(s) 5, 341, 360, 372, 410
GlaI GCGC 5 cut(s) 110, 119, 154, 237, 264
GluI GCNGC 5 cut(s) 5, 341, 360, 372, 410
GsaI CCCAGC 1 cut(s) 309
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 2 cut(s) 284, 747
HapII CCGG 5 cut(s) 232, 266, 390, 413, 711
HgaI GACGC 1 cut(s) 181
HhaI GCGC 5 cut(s) 111, 120, 155, 238, 265
Hin1I GRCGYC 2 cut(s) 173, 263
Hin1II CATG 5 cut(s) 118, 209, 507, 629, 812
Hin6I GCGC 5 cut(s) 109, 118, 153, 236, 263
HinP1I GCGC 5 cut(s) 109, 118, 153, 236, 263
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 1 cut(s) 690
HpaII CCGG 5 cut(s) 232, 266, 390, 413, 711
HphI GGTGA 2 cut(s) 31, 456
Hpy166II GTNNAC 2 cut(s) 222, 780
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 163, 711
Hpy8I GTNNAC 2 cut(s) 222, 780
Hpy99I CGWCG 2 cut(s) 220, 223
HpyAV CCTTC 5 cut(s) 46, 103, 295, 489, 547
HpyCH4V TGCA 4 cut(s) 148, 611, 629, 660
HpyF10VI GCNNNNNNNGC 4 cut(s) 115, 117, 356, 368
HpyF3I CTNAG 2 cut(s) 192, 345
Hsp92I GRCGYC 2 cut(s) 173, 263
Hsp92II CATG 5 cut(s) 118, 209, 507, 629, 812
HspAI GCGC 5 cut(s) 109, 118, 153, 236, 263
KasI GGCGCC 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 710
Kzo9I GATC 1 cut(s) 366
Lsp1109I GCAGC 2 cut(s) 346, 396
LweI GCATC 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 462
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 4 cut(s) 18, 21, 396, 529
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 5 cut(s) 416, 448, 714, 755, 763
MluNI TGGCCA 1 cut(s) 747
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 1 cut(s) 699
MmeI TCCRAC 1 cut(s) 779
Mox20I TGGCCA 1 cut(s) 747
MroI TCCGGA 1 cut(s) 710
MscI TGGCCA 1 cut(s) 747
MseI TTAA 3 cut(s) 312, 575, 820
MslI CAYNNNNRTG 2 cut(s) 630, 773
Msp20I TGGCCA 1 cut(s) 747
MspI CCGG 5 cut(s) 232, 266, 390, 413, 711
MspR9I CCNGG 3 cut(s) 233, 390, 391
MvnI CGCG 2 cut(s) 109, 238
MwoI GCNNNNNNNGC 4 cut(s) 115, 117, 356, 368
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 3 cut(s) 233, 390, 391
NdeI CATATG 1 cut(s) 662
NdeII GATC 1 cut(s) 366
NlaIII CATG 5 cut(s) 118, 209, 507, 629, 812
NlaIV GGNNCC 2 cut(s) 264, 782
NmuCI GTSAC 1 cut(s) 462
OliI CACNNNNGTG 1 cut(s) 773
PkrI GCNGC 5 cut(s) 6, 342, 361, 373, 411
PleI GAGTC 1 cut(s) 698
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 698
PshBI ATTAAT 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 264, 782
PspPI GGNCC 1 cut(s) 780
RsaI GTAC 2 cut(s) 587, 623
RsaNI GTAC 2 cut(s) 586, 622
RseI CAYNNNNRTG 2 cut(s) 630, 773
SalI GTCGAC 1 cut(s) 220
SaqAI TTAA 3 cut(s) 312, 575, 820
SatI GCNGC 5 cut(s) 5, 341, 360, 372, 410
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 1 cut(s) 780
SchI GAGTC 1 cut(s) 699
ScrFI CCNGG 3 cut(s) 233, 390, 391
SfaNI GCATC 1 cut(s) 77
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 1 cut(s) 780
SmaI CCCGGG 1 cut(s) 391
SmiMI CAYNNNNRTG 2 cut(s) 630, 773
SrfI GCCCGGGC 1 cut(s) 391
Sse9I AATT 5 cut(s) 416, 448, 714, 755, 763
SsiI CCGC 6 cut(s) 5, 238, 341, 372, 394, 473
SspDI GGCGCC 1 cut(s) 262
StyD4I CCNGG 3 cut(s) 231, 388, 389
TaqI TCGA 4 cut(s) 162, 221, 243, 688
TasI AATT 5 cut(s) 416, 448, 714, 755, 763
TatI WGTACW 1 cut(s) 585
TauI GCSGC 3 cut(s) 7, 343, 374
Tru1I TTAA 3 cut(s) 312, 575, 820
Tru9I TTAA 3 cut(s) 312, 575, 820
TseFI GTSAC 1 cut(s) 462
TseI GCWGC 2 cut(s) 359, 409
Tsp45I GTSAC 1 cut(s) 462
TspDTI ATGAA 3 cut(s) 103, 197, 492
TspGWI ACGGA 1 cut(s) 763
TspMI CCCGGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 780
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 2 cut(s) 714, 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 755
XmaI CCCGGG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.