Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0021457

Physical Location & Seq

Genomic Coordinates Reverse (-)

41355917 .. 41356135

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG190200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGCCGGAGACGGAAAAGCTCGAGTCTTTCATCCACGAGTCGTCGTCGCCGACCTCAGTCTGGGCACGGTTCGAGAAGATGATATGGGCGGCGCAAGACACCATGTGTGAGGCAATCACCATCCAACCTGAGAATAACGTCTCGGGCAGCGTTGGAAACCGGCATTTGTTGCTCAAAATCCCAGATTTCTTTGTTCCTGTAGCGATTCATTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Coprogen_oxidas

Protein Analysis

72

Amino Acids

8.12

Weight (kDa)

5.13

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021457)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0298511
rosa_samantha	Rh1CG190200 Rh6BG399900 Rh7AG246400 Rh7CG262000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	60
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	2, 145
Ama87I	CYCGRG	2 cut(s)	20, 142
ApeKI	GCWGC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	94
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	2 cut(s)	20, 142
BaeGI	GKGCMC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	128
BcoDI	GTCTC	2 cut(s)	2, 145
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	2 cut(s)	90, 148
BlsI	GCNGC	2 cut(s)	91, 149
BmeT110I	CYCGRG	2 cut(s)	20, 142
BoxI	GACNNNNGTC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse118I	RCCGGY	1 cut(s)	159
BseGI	GGATG	2 cut(s)	30, 120
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	2 cut(s)	69, 120
BseSI	GKGCMC	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	20, 142
BsiSI	CCGG	2 cut(s)	5, 160
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	2, 145
BsmBI	CGTCTC	2 cut(s)	2, 145
BsoBI	CYCGRG	2 cut(s)	20, 142
Bsp1286I	GDGCHC	1 cut(s)	67
BspACI	CCGC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	68, 121
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	55, 129
BstF5I	GGATG	2 cut(s)	30, 120
BstHHI	GCGC	1 cut(s)	94
BstMAI	GTCTC	2 cut(s)	2, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstPAI	GACNNNNGTC	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	67
BstV1I	GCAGC	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	30, 120
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	159
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	1 cut(s)	19
CviKI_1	RGCY	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	55, 129
DraIII	CACNNNGTG	1 cut(s)	105
Eco88I	CYCGRG	2 cut(s)	20, 142
Esp3I	CGTCTC	2 cut(s)	2, 145
FaeI	CATG	1 cut(s)	106
FaiI	YATR	2 cut(s)	85, 104
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	90, 148
FokI	GGATG	2 cut(s)	17, 107
Fsp4HI	GCNGC	2 cut(s)	90, 148
GlaI	GCGC	1 cut(s)	93
GluI	GCNGC	2 cut(s)	90, 148
HapII	CCGG	2 cut(s)	5, 160
HhaI	GCGC	1 cut(s)	94
Hin1II	CATG	1 cut(s)	106
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HinfI	GANTC	3 cut(s)	23, 38, 205
HpaII	CCGG	2 cut(s)	5, 160
HphI	GGTGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	46, 49
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	2 cut(s)	55, 129
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	106
HspAI	GCGC	1 cut(s)	92
LpnPI	CCDG	6 cut(s)	18, 46, 141, 173, 195, 210
Lsp1109I	GCAGC	1 cut(s)	159
MaeII	ACGT	1 cut(s)	138
MboII	GAAGA	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	67
MlyI	GAGTC	2 cut(s)	32, 47
MmeI	TCCRAC	2 cut(s)	133, 148
MnlI	CCTC	2 cut(s)	64, 103
MspI	CCGG	2 cut(s)	5, 160
MwoI	GCNNNNNNNGC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	91, 149
PleI	GAGTC	2 cut(s)	31, 46
PpsI	GAGTC	2 cut(s)	31, 46
PshAI	GACNNNNGTC	1 cut(s)	56
PspXI	VCTCGAGB	1 cut(s)	20
SatI	GCNGC	2 cut(s)	90, 148
SchI	GAGTC	2 cut(s)	32, 47
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	4 cut(s)	21, 56, 130, 141
SfcI	CTRYAG	1 cut(s)	198
Sfr274I	CTCGAG	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
SsiI	CCGC	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	21, 72
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	19, 197
TspGWI	ACGGA	1 cut(s)	26
XhoI	CTCGAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.