Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0021457

Physical Location & Seq

Genomic Coordinates Reverse (-)

25596930 .. 25597202

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGATGACGAACGCCCCTTCCTTCACTCTGCTATGCGCTGTCATTGAGAAAGAGATGCTGGAGACAGAAAAGCTCGAGTCTTTCATCCGCGAGTTGTCATCGCCGACCTCCGTCTGGGCACCGTTAGAGAAAATGATACAAGAGGCGCAAGACACCATGTTTGAGGCAATCACCATCCAATTTGAGAATAACATCATGGGTAGTGTCGGAAACCTGGATTTGTTGCTCGAAATCCCAGATTTCTTTGTTCCTGTAGAGCTTCGTTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Coprogen_oxidas

Protein Analysis

90

Amino Acids

10.23

Weight (kDa)

4.09

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021457)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0298511
rosa_samantha	Rh1CG190200 Rh6BG399900 Rh7AG246400 Rh7CG262000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	118
AccII	CGCG	1 cut(s)	90
AciI	CCGC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	114
AjnI	CCWGG	1 cut(s)	213
AloI	GAACNNNNNNTCC	1 cut(s)	34
AluBI	AGCT	2 cut(s)	73, 259
AluI	AGCT	2 cut(s)	73, 259
Alw26I	GTCTC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	2 cut(s)	38, 148
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	118
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	215
BcoDI	GTCTC	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	252
Bme1390I	CCNGG	1 cut(s)	215
BmeT110I	CYCGRG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	215
BmsI	GCATC	1 cut(s)	45
BoxI	GACNNNNGTC	1 cut(s)	110
BpmI	CTGGAG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	215
BseGI	GGATG	2 cut(s)	84, 174
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmAI	GTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	88
BspFNI	CGCG	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	123
BstF5I	GGATG	2 cut(s)	84, 174
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	2 cut(s)	38, 148
BstMAI	GTCTC	1 cut(s)	56
BstNI	CCWGG	1 cut(s)	215
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	121
BstUI	CGCG	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	2 cut(s)	84, 174
CfoI	GCGC	2 cut(s)	38, 148
CviAII	CATG	2 cut(s)	157, 196
CviJI	RGCY	2 cut(s)	73, 259
CviKI_1	RGCY	2 cut(s)	73, 259
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	160, 199
FaiI	YATR	3 cut(s)	34, 158, 197
FatI	CATG	2 cut(s)	156, 195
FokI	GGATG	2 cut(s)	71, 161
GlaI	GCGC	2 cut(s)	37, 147
GsuI	CTGGAG	1 cut(s)	80
HhaI	GCGC	2 cut(s)	38, 148
Hin1II	CATG	2 cut(s)	160, 199
Hin6I	GCGC	2 cut(s)	36, 146
HinP1I	GCGC	2 cut(s)	36, 146
HinfI	GANTC	1 cut(s)	77
HphI	GGTGA	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	27, 31
HpyCH4III	ACNGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	160, 199
HspAI	GCGC	2 cut(s)	36, 146
LpnPI	CCDG	6 cut(s)	44, 100, 200, 227, 249, 264
LweI	GCATC	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	118, 136, 157
MspR9I	CCNGG	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	90
NlaIII	CATG	2 cut(s)	160, 199
NlaIV	GGNNCC	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	74
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	74
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	4 cut(s)	75, 110, 216, 261
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	252
Sfr274I	CTCGAG	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	75, 228
TasI	AATT	1 cut(s)	179
TspDTI	ATGAA	1 cut(s)	73
TspGWI	ACGGA	1 cut(s)	100
XhoI	CTCGAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.