Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0021457

Physical Location & Seq

Genomic Coordinates Reverse (-)

62742276 .. 62742713

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG399900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCGCCACCAGCTACACTCTCATCTTCTTCCTCCTTCACCCTCCTCTCCCCATCTCCAAAGCTCGCATCTTTCCACTCCAAAACACACTCCTTCAACTCCGCCACGCGCTTCACGGGCCTCCGTTCCCCTCCCTCCATTACTCTGCGATGCGCTGTCATCGATAAAGAGACGCCGGAGATGGAAAAGCCTGAGACTTTCCTCCACGAGTCGTCGTCGCCGACCTCAGTCCGGGTGTTGTTCGATAAGATGATACGGGAAGCGCAGGACACAGTGTGTGAGGCCATCGCCGTTTGGGAGAAGGCTGGGGTTAATGTGTCTGTTGTGTATGGAGTTATGTCGCCTAAGGCTTATAAAGCTGCCAAGGGCGTCGCTATTGATCACAAGCCCGGCCCGATGATGTTCTTCGCAGCCGGAATTAGCTCAGAGATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Coprogen_oxidas

Protein Analysis

145

Amino Acids

15.58

Weight (kDa)

8.6

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coprogen_oxidas	PF01218	89 - 142	6e-06	Coproporphyrinogen III oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0021457)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0298511
rosa_samantha	Rh1CG190200 Rh6BG399900 Rh7AG246400 Rh7CG262000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	354
AccII	CGCG	1 cut(s)	109
AciI	CCGC	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	173, 369
AdeI	CACNNNGTG	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	4 cut(s)	14, 64, 359, 423
AluI	AGCT	4 cut(s)	14, 64, 359, 423
Alw26I	GTCTC	2 cut(s)	164, 188
AoxI	GGCC	3 cut(s)	118, 282, 391
ApeKI	GCWGC	2 cut(s)	359, 410
AspLEI	GCGC	3 cut(s)	111, 155, 265
AspS9I	GGNCC	2 cut(s)	118, 392
AsuC2I	CCSGG	2 cut(s)	233, 390
AsuHPI	GGTGA	1 cut(s)	31
AxyI	CCTNAGG	1 cut(s)	345
BauI	CACGAG	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	346, 422
BccI	CCATC	3 cut(s)	61, 175, 293
BceAI	ACGGC	1 cut(s)	275
BclI	TGATCA	1 cut(s)	379
BcnI	CCSGG	2 cut(s)	233, 390
BcoDI	GTCTC	2 cut(s)	164, 188
BisI	GCNGC	2 cut(s)	360, 411
BlsI	GCNGC	2 cut(s)	361, 412
Bme1390I	CCNGG	2 cut(s)	233, 390
BmgT120I	GGNCC	2 cut(s)	118, 392
BmrFI	CCNGG	2 cut(s)	233, 390
BmsI	GCATC	2 cut(s)	77, 140
BoxI	GACNNNNGTC	1 cut(s)	227
BpuMI	CCSGG	2 cut(s)	233, 390
Bsa29I	ATCGAT	1 cut(s)	162
BsaHI	GRCGYC	2 cut(s)	173, 369
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	3 cut(s)	183, 240, 438
BseRI	GAGGAG	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	346, 422
BseYI	CCCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	120, 284, 393
BshVI	ATCGAT	1 cut(s)	162
BsiSI	CCGG	4 cut(s)	176, 232, 390, 414
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	164, 188
BsmBI	CGTCTC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	120, 284, 393
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	3 cut(s)	120, 284, 393
BspCNI	CTCAG	3 cut(s)	184, 239, 437
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	2 cut(s)	173, 369
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	206
Bst4CI	ACNGT	1 cut(s)	274
BstACI	GRCGYC	2 cut(s)	173, 369
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	4 cut(s)	192, 226, 345, 424
BstFNI	CGCG	1 cut(s)	109
BstHHI	GCGC	3 cut(s)	111, 155, 265
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	2 cut(s)	164, 188
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 356
BstPAI	GACNNNNGTC	1 cut(s)	227
BstSCI	CCNGG	2 cut(s)	231, 388
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	2 cut(s)	346, 422
Bsu15I	ATCGAT	1 cut(s)	162
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	120, 284, 393
BsuTUI	ATCGAT	1 cut(s)	162
BtgZI	GCGATG	2 cut(s)	163, 271
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	66
CfoI	GCGC	3 cut(s)	111, 155, 265
Cfr13I	GGNCC	2 cut(s)	118, 392
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	2 cut(s)	181, 358
DdeI	CTNAG	4 cut(s)	192, 226, 345, 424
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
DraIII	CACNNNGTG	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	363
Eco81I	CCTNAGG	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	164
FaiI	YATR	3 cut(s)	330, 338, 354
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	360, 411
Fsp4HI	GCNGC	2 cut(s)	360, 411
GlaI	GCGC	3 cut(s)	110, 154, 264
GluI	GCNGC	2 cut(s)	360, 411
GsaI	CCCAGC	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	120, 284, 393
HapII	CCGG	4 cut(s)	176, 232, 390, 414
HgaI	GACGC	2 cut(s)	181, 358
HhaI	GCGC	3 cut(s)	111, 155, 265
Hin1I	GRCGYC	2 cut(s)	173, 369
Hin6I	GCGC	3 cut(s)	109, 153, 263
HinP1I	GCGC	3 cut(s)	109, 153, 263
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	4 cut(s)	176, 232, 390, 414
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	427
Hpy99I	CGWCG	3 cut(s)	217, 220, 374
HpyAV	CCTTC	3 cut(s)	46, 103, 295
HpyCH4III	ACNGT	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 356
HpyF3I	CTNAG	4 cut(s)	192, 226, 345, 424
Hsp92I	GRCGYC	2 cut(s)	173, 369
HspAI	GCGC	3 cut(s)	109, 153, 263
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	379
LpnPI	CCDG	8 cut(s)	24, 189, 204, 245, 251, 291, 403, 427
Lsp1109I	GCAGC	2 cut(s)	346, 422
LweI	GCATC	2 cut(s)	77, 140
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	3 cut(s)	18, 21, 397
MluCI	AATT	1 cut(s)	417
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	9 cut(s)	43, 53, 56, 131, 141, 145, 212, 235, 274
MseI	TTAA	2 cut(s)	312, 436
MspI	CCGG	4 cut(s)	176, 232, 390, 414
MspR9I	CCNGG	2 cut(s)	233, 390
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	117, 356
NciI	CCSGG	2 cut(s)	233, 390
NdeII	GATC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PkrI	GCNGC	2 cut(s)	361, 412
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PshAI	GACNNNNGTC	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	305
PspPI	GGNCC	2 cut(s)	118, 392
SaqAI	TTAA	2 cut(s)	312, 436
SatI	GCNGC	2 cut(s)	360, 411
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	118, 392
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	233, 390
SetI	ASST	5 cut(s)	16, 66, 227, 361, 425
SfaNI	GCATC	2 cut(s)	77, 140
Sse9I	AATT	1 cut(s)	417
SsiI	CCGC	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	231, 388
StyI	CCWWGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	162, 243
TasI	AATT	1 cut(s)	417
Tru1I	TTAA	2 cut(s)	312, 436
Tru9I	TTAA	2 cut(s)	312, 436
TscAI	CASTG	1 cut(s)	279
TseI	GCWGC	2 cut(s)	359, 410
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.