Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022827

Physical Location & Seq

Genomic Coordinates Reverse (-)

3418899 .. 3419667

Gene Structure 769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGTGAAGTTTTTGAAGCCAAACAAGGCCGTGATCCTCTTCCAGGGTCGCTTAGCCGGCCGCAAAGGCATCATTGTGAAGGCCATCGACGAAGGCATGGGCGACAATGCCTCGTTGCCGGAATCAAGAAGTACCCGAGCAAGGACTCGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

51

Amino Acids

5.65

Weight (kDa)

11.64

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022827)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0182031
rosa_roxburghii	Rroxscaffold_3G00220910 Rroxscaffold_6G00388730
rosa_samantha	Rh5BG256800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	1 cut(s)	58
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	2 cut(s)	43, 141
AgsI	TTSAA	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	42
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	3 cut(s)	27, 58, 81
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	135
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	61
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	44
BmeT110I	CYCGRG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	44
BmsI	GCATC	1 cut(s)	78
Bpu1102I	GCTNAGC	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 141
Bse118I	RCCGGY	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	43, 141
BseX3I	CGGCCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	61
BshFI	GGCC	3 cut(s)	29, 60, 83
BsiEI	CGRYCG	1 cut(s)	61
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	57, 119
BslI	CCNNNNNNNGG	2 cut(s)	43, 141
BsnI	GGCC	3 cut(s)	29, 60, 83
BsoBI	CYCGRG	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	33
Bsp1720I	GCTNAGC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	29, 60, 83
BspPI	GGATC	1 cut(s)	28
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	1 cut(s)	52
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	36
BstMBI	GATC	1 cut(s)	33
BstMCI	CGRYCG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 66
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstZI	CGGCCG	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	29, 60, 83
Cac8I	GCNNGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	5 cut(s)	19, 29, 56, 60, 83
CviKI_1	RGCY	5 cut(s)	19, 29, 56, 60, 83
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	58
EagI	CGGCCG	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	58
Eco52I	CGGCCG	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	135
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	42
FaeI	CATG	1 cut(s)	100
FaiI	YATR	1 cut(s)	98
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	61
HaeIII	GGCC	3 cut(s)	29, 60, 83
HapII	CCGG	2 cut(s)	57, 119
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	2 cut(s)	122, 145
HpaII	CCGG	2 cut(s)	57, 119
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	126
Hpy99I	CGWCG	2 cut(s)	92, 153
HpyAV	CCTTC	2 cut(s)	73, 86
HpyCH4III	ACNGT	1 cut(s)	153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 66
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	56
KroNI	GCCGGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	29, 56, 70, 132
LweI	GCATC	1 cut(s)	78
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	1 cut(s)	31
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	2 cut(s)	47, 121
MroNI	GCCGGC	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	2 cut(s)	57, 119
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	57, 66
NaeI	GCCGGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	33
NgoMIV	GCCGGC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
RseI	CAYNNNNRTG	1 cut(s)	74
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	1 cut(s)	33
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	44
SfaNI	GCATC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	74
SsiI	CCGC	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	87, 148
TauI	GCSGC	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	122
XagI	CCTNNNNNAGG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.