Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0022827

Physical Location & Seq

Genomic Coordinates Reverse (-)

3515742 .. 3529264

Gene Structure 13523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCAGCTTGTGTCGGTCCGGTCTCATCGTGTTTTCATGTTGCGACGGGGTTTGTTGGGTTTTGGTCATGGTAGACCGTGGAGGACTCGGAGCGGCGGGGACATGATGGAGCAGGCACGGGAAGAGCTGCGCCGGAAGTTTGGTGGTCCGGAGGTGACGGCAGAATCGCGCCAAGCCAAGCCTTTTGGGCCTTGGCCACTAAGAACCATTGAACTCACAAAGAAGCAATCACCACCGTCCTTCGGGCTCGGCGTCAAGCACCGCTACACAATAGGAAACGAGATCATCGCCGTTTTATCGAAGAAATCCAACCCTAGCGAGCCTAGGCATATGAAAAAAAGGATGGTTGATGCTCATCTGGGTGCTGATCATCTTATGAAGAGGATCAAGCTTGCAAGATCGACCAATCGCCGCCGTACGATCAAGCTCCGCATTCACAAAGGCACCGCTAATCTTCAACCCTTGATCTTCCACTCCACACGCAAAATTGTCCATCAAGGCGGGTATGAGGATGATCAAGAGAAGGAGGAGATTCCAAAACCGAGAAGGATCGGTCGAGACGTTGCGGGAAAACCAAACAAGGCCGTGATCCTCTTCCGGGGTCACTTCGCTGGCCACAAAGTCATCATTGTGAAGGCCATCAACGAAGGCATGCGTGACAATGCCTCATCACCGGAATCAAGAAGTACCCGAGCAAGGACTCGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0015934 GO:0016020 GO:0022625 GO:0022626 GO:0032991 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KOW Ribosomal_L27e

Protein Analysis

236

Amino Acids

26.99

Weight (kDa)

11.56

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022827)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0182031
rosa_roxburghii	Rroxscaffold_3G00220910 Rroxscaffold_6G00388730
rosa_samantha	Rh5BG256800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	443
AccBSI	CCGCTC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	73
AccII	CGCG	1 cut(s)	169
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	8 cut(s)	93, 96, 262, 412, 430, 447, 501, 566
AclWI	GGATC	3 cut(s)	392, 557, 583
AcoI	YGGCCR	2 cut(s)	194, 613
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	2 cut(s)	418, 688
AfiI	CCNNNNNNNGG	3 cut(s)	242, 598, 696
AgsI	TTSAA	2 cut(s)	212, 458
AluBI	AGCT	4 cut(s)	7, 127, 391, 427
AluI	AGCT	4 cut(s)	7, 127, 391, 427
Alw26I	GTCTC	2 cut(s)	27, 552
AlwI	GGATC	3 cut(s)	392, 557, 583
Ama87I	CYCGRG	1 cut(s)	690
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	5 cut(s)	188, 194, 582, 613, 636
ApeKI	GCWGC	2 cut(s)	4, 127
AspA2I	CCTAGG	1 cut(s)	323
AspLEI	GCGC	2 cut(s)	132, 171
AspS9I	GGNCC	3 cut(s)	16, 146, 188
AsuC2I	CCSGG	1 cut(s)	599
AsuHPI	GGTGA	3 cut(s)	166, 222, 663
AvaI	CYCGRG	1 cut(s)	690
AvaII	GGWCC	2 cut(s)	16, 146
AvrII	CCTAGG	1 cut(s)	323
BalI	TGGCCA	2 cut(s)	196, 615
BanI	GGYRCC	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	16, 114
BccI	CCATC	4 cut(s)	100, 337, 501, 647
BceAI	ACGGC	4 cut(s)	174, 275, 399, 569
BclI	TGATCA	2 cut(s)	367, 514
BcnI	CCSGG	1 cut(s)	599
BcoDI	GTCTC	2 cut(s)	27, 552
BfaI	CTAG	2 cut(s)	315, 324
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	4 cut(s)	5, 94, 128, 412
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	4 cut(s)	6, 95, 129, 413
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	2 cut(s)	16, 146
BmeT110I	CYCGRG	1 cut(s)	690
BmgT120I	GGNCC	3 cut(s)	16, 146, 188
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	4 cut(s)	77, 191, 323, 598
BsaWI	WCCGGW	3 cut(s)	18, 148, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 598, 696
Bse8I	GATNNNNATC	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	148
BseDI	CCNNGG	4 cut(s)	77, 191, 323, 598
BseGI	GGATG	2 cut(s)	348, 517
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	3 cut(s)	242, 598, 696
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	16, 114
Bsh1236I	CGCG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	556
BshFI	GGCC	5 cut(s)	190, 196, 584, 615, 638
BshNI	GGYRCC	1 cut(s)	443
BsiEI	CGRYCG	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	690
BsiSI	CCGG	5 cut(s)	19, 133, 149, 598, 674
BsiWI	CGTACG	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	3 cut(s)	242, 598, 696
BsmAI	GTCTC	2 cut(s)	27, 552
BsmBI	CGTCTC	1 cut(s)	552
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	5 cut(s)	190, 196, 584, 615, 638
Bso31I	GGTCTC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	690
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	9 cut(s)	282, 367, 384, 398, 420, 465, 514, 549, 588
BspACI	CCGC	8 cut(s)	93, 96, 262, 412, 430, 447, 501, 566
BspANI	GGCC	5 cut(s)	190, 196, 584, 615, 638
BspEI	TCCGGA	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	445
BspPI	GGATC	3 cut(s)	392, 557, 583
BspQI	GCTCTTC	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	93
BssECI	CCNNGG	4 cut(s)	77, 191, 323, 598
BssMI	GATC	9 cut(s)	282, 367, 384, 398, 420, 465, 514, 549, 588
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	191, 323
Bst4CI	ACNGT	3 cut(s)	78, 237, 708
Bst6I	CTCTTC	3 cut(s)	117, 374, 599
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	5 cut(s)	114, 320, 393, 613, 653
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	348, 517
BstFNI	CGCG	1 cut(s)	169
BstHHI	GCGC	2 cut(s)	132, 171
BstKTI	GATC	9 cut(s)	285, 370, 387, 401, 423, 468, 517, 552, 591
BstMAI	GTCTC	2 cut(s)	27, 552
BstMBI	GATC	9 cut(s)	282, 367, 384, 398, 420, 465, 514, 549, 588
BstMCI	CGRYCG	1 cut(s)	556
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	597
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	16, 114
BsuRI	GGCC	5 cut(s)	190, 196, 584, 615, 638
BtgI	CCRYGG	1 cut(s)	77
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	348, 517
Cac8I	GCNNGC	5 cut(s)	114, 320, 393, 613, 653
CfoI	GCGC	2 cut(s)	132, 171
Cfr13I	GGNCC	3 cut(s)	16, 146, 188
CpoI	CGGWCCG	1 cut(s)	16
CseI	GACGC	1 cut(s)	241
Csp6I	GTAC	2 cut(s)	417, 687
CspI	CGGWCCG	1 cut(s)	16
CviAII	CATG	4 cut(s)	37, 68, 103, 652
CviQI	GTAC	2 cut(s)	417, 687
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	9 cut(s)	284, 369, 386, 400, 422, 467, 516, 551, 590
DpnII	GATC	9 cut(s)	282, 367, 384, 398, 420, 465, 514, 549, 588
EaeI	YGGCCR	2 cut(s)	194, 613
Eam1104I	CTCTTC	3 cut(s)	117, 374, 599
EarI	CTCTTC	3 cut(s)	117, 374, 599
Eco130I	CCWWGG	2 cut(s)	191, 323
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	16, 146
Eco88I	CYCGRG	1 cut(s)	690
EcoT14I	CCWWGG	2 cut(s)	191, 323
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	191, 323
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	4 cut(s)	40, 71, 106, 655
FaiI	YATR	8 cut(s)	38, 69, 104, 330, 332, 377, 507, 653
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	36, 67, 102, 651
FauI	CCCGC	3 cut(s)	89, 494, 559
FauNDI	CATATG	1 cut(s)	330
FbaI	TGATCA	2 cut(s)	367, 514
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	5, 94, 128, 412
FokI	GGATG	2 cut(s)	355, 524
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	5, 94, 128, 412
FspBI	CTAG	2 cut(s)	315, 324
GlaI	GCGC	2 cut(s)	131, 170
GluI	GCNGC	4 cut(s)	5, 94, 128, 412
HaeIII	GGCC	5 cut(s)	190, 196, 584, 615, 638
HapII	CCGG	5 cut(s)	19, 133, 149, 598, 674
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	132, 171
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	4 cut(s)	40, 71, 106, 655
Hin6I	GCGC	2 cut(s)	130, 169
HinP1I	GCGC	2 cut(s)	130, 169
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	5 cut(s)	85, 164, 532, 677, 700
HpaII	CCGG	5 cut(s)	19, 133, 149, 598, 674
HphI	GGTGA	3 cut(s)	166, 222, 663
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	4 cut(s)	149, 518, 557, 681
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	2 cut(s)	48, 708
HpyAV	CCTTC	5 cut(s)	250, 517, 540, 628, 641
HpyCH4III	ACNGT	3 cut(s)	78, 237, 708
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	2 cut(s)	4, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	40, 71, 106, 655
HspAI	GCGC	2 cut(s)	130, 169
Kpn2I	TCCGGA	1 cut(s)	148
Ksp22I	TGATCA	2 cut(s)	367, 514
Kzo9I	GATC	9 cut(s)	282, 367, 384, 398, 420, 465, 514, 549, 588
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	3 cut(s)	90, 109, 432
LpnPI	CCDG	8 cut(s)	32, 98, 146, 162, 344, 597, 611, 687
Lsp1109I	GCAGC	2 cut(s)	16, 114
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	315, 324
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	154, 602, 656
MalI	GATC	9 cut(s)	284, 369, 386, 400, 422, 467, 516, 551, 590
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	9 cut(s)	282, 367, 384, 398, 420, 465, 514, 549, 588
MboII	GAAGA	6 cut(s)	134, 313, 391, 446, 460, 586
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	2 cut(s)	196, 615
MluCI	AATT	1 cut(s)	486
MluNI	TGGCCA	2 cut(s)	196, 615
MlyI	GAGTC	2 cut(s)	79, 694
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	7 cut(s)	75, 145, 375, 502, 520, 602, 676
Mox20I	TGGCCA	2 cut(s)	196, 615
MroI	TCCGGA	1 cut(s)	148
MscI	TGGCCA	2 cut(s)	196, 615
MslI	CAYNNNNRTG	2 cut(s)	360, 629
Msp20I	TGGCCA	2 cut(s)	196, 615
MspI	CCGG	5 cut(s)	19, 133, 149, 598, 674
MspR9I	CCNGG	1 cut(s)	599
Mva1269I	GAATGC	1 cut(s)	432
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	9 cut(s)	282, 367, 384, 398, 420, 465, 514, 549, 588
NlaIII	CATG	4 cut(s)	40, 71, 106, 655
NlaIV	GGNNCC	1 cut(s)	445
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	3 cut(s)	154, 602, 656
NspI	RCATGY	1 cut(s)	655
PaeI	GCATGC	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 558
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	164, 532, 677
Pfl23II	CGTACG	1 cut(s)	416
PkrI	GCNGC	4 cut(s)	6, 95, 129, 413
PleI	GAGTC	2 cut(s)	79, 694
PpsI	GAGTC	2 cut(s)	79, 694
PspLI	CGTACG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	3 cut(s)	16, 146, 188
RsaI	GTAC	2 cut(s)	418, 688
RsaNI	GTAC	2 cut(s)	417, 687
RseI	CAYNNNNRTG	2 cut(s)	360, 629
Rsr2I	CGGWCCG	1 cut(s)	16
RsrII	CGGWCCG	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	4 cut(s)	5, 94, 128, 412
Sau3AI	GATC	9 cut(s)	282, 367, 384, 398, 420, 465, 514, 549, 588
Sau96I	GGNCC	3 cut(s)	16, 146, 188
SchI	GAGTC	2 cut(s)	79, 694
ScrFI	CCNGG	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	6 cut(s)	9, 129, 156, 393, 429, 564
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	2 cut(s)	16, 146
SmiMI	CAYNNNNRTG	2 cut(s)	360, 629
SphI	GCATGC	1 cut(s)	655
Sse9I	AATT	1 cut(s)	486
SsiI	CCGC	8 cut(s)	93, 96, 262, 412, 430, 447, 501, 566
SspMI	CTAG	2 cut(s)	315, 324
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	2 cut(s)	191, 323
TaaI	ACNGT	3 cut(s)	78, 237, 708
TaiI	ACGT	1 cut(s)	564
TaqI	TCGA	4 cut(s)	299, 401, 556, 703
TaqII	GACCGA	2 cut(s)	4, 542
TasI	AATT	1 cut(s)	486
TauI	GCSGC	2 cut(s)	96, 414
TfiI	GAWTC	3 cut(s)	164, 532, 677
TseFI	GTSAC	3 cut(s)	154, 602, 656
TseI	GCWGC	2 cut(s)	4, 127
Tsp45I	GTSAC	3 cut(s)	154, 602, 656
TspDTI	ATGAA	3 cut(s)	25, 347, 392
VpaK11BI	GGWCC	2 cut(s)	16, 146
XceI	RCATGY	1 cut(s)	655
XmaJI	CCTAGG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	73
XspI	CTAG	2 cut(s)	315, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.