Rroxscaffold_6G00388730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0022827
Physical Location & Seq
Reverse (-)
1848832 .. 1855225
6394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388730.1

Sequence Viewer

Length: 408 bp
ATGTTCTTCCTCACACCAAATCCAAGGGAGCTTTCGAGCTTAGAGAGAGGGAGGAGCGTTGTCGCCATGGTCAAATTTTTGAAGCCAAACAAGGCCGTGATCCTCCTTCGGGGTCCCTACGGCGGTCACAAGGGTCGTGTTCCTCCTTTAGGAATGGGGAAAAATGCATGGGGGATATATTGGATAATTGACAGGTCAAGTGGCATGCAAACTGCTGAGAGGTTGAGGAGGAGCCCACAGAAGAGGGAAGAACGTATGCGCGGTGCGCCGTGTGAGTCATCTGTGGGTGCCGTGTTGAACTATAACGTGGACAGGTGGCTGCCACCTACCGTTATCAATGCCAATGACGATACCCGGAGTCAGAGTCCAGAGAGACAAGACCTTTATAAATACTTCTGCCTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.43

Weight (kDa)

10.14

Isoelectric Point (pI)

61.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022827)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0182031
rosa_roxburghii Rroxscaffold_3G00220910 Rroxscaffold_6G00388730
rosa_samantha Rh5BG256800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 287
AccII CGCG 1 cut(s) 261
AciI CCGC 2 cut(s) 123, 261
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 109, 122, 149
AgsI TTSAA 2 cut(s) 82, 298
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
AluBI AGCT 2 cut(s) 31, 39
AluI AGCT 2 cut(s) 31, 39
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 1 cut(s) 94
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 2 cut(s) 261, 268
AspS9I GGNCC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 355
AvaII GGWCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 236
BbvI GCAGC 1 cut(s) 306
BceAI ACGGC 4 cut(s) 80, 136, 253, 275
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 367
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 355
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 4 cut(s) 114, 115, 233, 289
BmrFI CCNGG 1 cut(s) 355
BpuMI CCSGG 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 23, 66
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 122, 149
BseDI CCNNGG 2 cut(s) 23, 66
BseLI CCNNNNNNNGG 3 cut(s) 109, 122, 149
BseMII CTCAG 1 cut(s) 207
BseRI GAGGAG 3 cut(s) 67, 241, 244
BseXI GCAGC 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 109, 122, 149
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 99
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 99
Bsp19I CCATGG 1 cut(s) 66
BspACI CCGC 2 cut(s) 123, 261
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 208
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 4 cut(s) 114, 115, 233, 289
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 23, 66
BssMI GATC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 23, 66
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 40, 216
BstDSI CCRYGG 1 cut(s) 66
BstENI CCTNNNNNAGG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 261
BstHHI GCGC 2 cut(s) 261, 268
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 353
BstUI CGCG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 306
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 2 cut(s) 261, 268
Cfr13I GGNCC 1 cut(s) 113
CviAII CATG 4 cut(s) 67, 168, 205, 403
CviJI RGCY 6 cut(s) 31, 39, 85, 95, 234, 319
CviKI_1 RGCY 6 cut(s) 31, 39, 85, 95, 234, 319
DdeI CTNAG 2 cut(s) 40, 216
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 23, 66
Eco24I GRGCYC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 23, 66
EcoT22I ATGCAT 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 2 cut(s) 23, 66
FaeI CATG 4 cut(s) 70, 171, 208, 406
FaiI YATR 8 cut(s) 68, 169, 178, 206, 257, 303, 387, 404
FaqI GGGAC 1 cut(s) 99
FatI CATG 4 cut(s) 66, 167, 204, 402
Fnu4HI GCNGC 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 320
GlaI GCGC 2 cut(s) 260, 267
GluI GCNGC 1 cut(s) 320
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 355
HhaI GCGC 2 cut(s) 261, 268
Hin1II CATG 4 cut(s) 70, 171, 208, 406
Hin6I GCGC 2 cut(s) 259, 266
HinP1I GCGC 2 cut(s) 259, 266
HinfI GANTC 3 cut(s) 275, 358, 364
HpaII CCGG 1 cut(s) 355
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 1 cut(s) 363
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 2 cut(s) 253, 306
HpyCH4V TGCA 2 cut(s) 167, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 2 cut(s) 40, 216
HpySE526I ACGT 2 cut(s) 253, 306
Hsp92II CATG 4 cut(s) 70, 171, 208, 406
HspAI GCGC 2 cut(s) 259, 266
KflI GGGWCCC 1 cut(s) 113
Kzo9I GATC 1 cut(s) 99
LmnI GCTCC 3 cut(s) 28, 54, 231
LpnPI CCDG 4 cut(s) 178, 298, 368, 381
Lsp1109I GCAGC 1 cut(s) 306
MaeII ACGT 2 cut(s) 253, 306
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 2 cut(s) 253, 260
MhlI GDGCHC 1 cut(s) 236
MluCI AATT 2 cut(s) 74, 186
MlyI GAGTC 3 cut(s) 284, 367, 373
MnlI CCTC 9 cut(s) 20, 41, 45, 113, 153, 213, 219, 222, 237
Mph1103I ATGCAT 1 cut(s) 169
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 355
MvnI CGCG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 355
NcoI CCATGG 1 cut(s) 66
NdeII GATC 1 cut(s) 99
NlaIII CATG 4 cut(s) 70, 171, 208, 406
NlaIV GGNNCC 4 cut(s) 114, 115, 233, 289
NmuCI GTSAC 1 cut(s) 125
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 3 cut(s) 283, 366, 372
PpsI GAGTC 3 cut(s) 283, 366, 372
PpuMI RGGWCCY 1 cut(s) 113
PsiI TTATAA 1 cut(s) 387
Psp5II RGGWCCY 1 cut(s) 113
PspN4I GGNNCC 4 cut(s) 114, 115, 233, 289
PspPI GGNCC 1 cut(s) 113
PspPPI RGGWCCY 1 cut(s) 113
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 3 cut(s) 284, 367, 373
ScrFI CCNGG 1 cut(s) 355
SduI GDGCHC 1 cut(s) 236
SetI ASST 9 cut(s) 33, 41, 197, 224, 256, 309, 317, 328, 384
SinI GGWCC 1 cut(s) 113
SphI GCATGC 1 cut(s) 208
Sse9I AATT 2 cut(s) 74, 186
SsiI CCGC 2 cut(s) 123, 261
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 2 cut(s) 23, 66
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 2 cut(s) 256, 309
TaqI TCGA 1 cut(s) 35
TasI AATT 2 cut(s) 74, 186
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 113
XagI CCTNNNNNAGG 1 cut(s) 147
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 208
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.