RchiOBHm_Chr7g0182501

heparanase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0021284
Physical Location & Seq
Forward (+)
3707411 .. 3708884
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16281

Sequence Viewer

Length: 630 bp
ATGTCAGCCAAGTACAATACTGCAGTATATTGCAGGCAGTCCGTATGCACTTCTGTGGCATCAATTATGGGACAAAATGTTCTTGCTGTTGACCACAACGGGGCTCCACACTTGCGCGTTTATGCTCATTGTTCAAAAGGAAGCGCGGGTATAACCCTACTCATCATAAATTTAAGCAATCAGACCGATTTCACTGTCAATGTTAAAAATGTTCTGGAGTTTGATACAGCTGCTCGATCAAGAAACACTGGCAGAGGAAGTAATTTCGGTCACGGACTTAAGAGAACGGTGTCATGGGTTGGTCTTAAAGCATCAGATGGACCGTTACACGGAAAAGAATACCATCTGACTCCAAAAGACGGGAACCTTAGAAACAAAATAATGGTCCTAAATGGAGTTCCATTGGAAATTACCAAGGATGGAAACATCCCGGAATTAGAACCTGTTCTTGTTCCCACAAATTCTCCTCTATCAATCACCTCTTTGTCCATCAAGTTTGTTGTGCTGCTCACTTTGAGGCTCCAGCTTGTAGATGATTTCTCTCGTCTCAACCCCCCAGAGCTTCTGTATGTTAGCTTAGTACTTGCTTGCAGAATTTTATGGGCAAATGGCAATTGTAAATTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko05205 map00531 map01100 map05205
Pfam Domains
Protein Families
Glyco_hydro_79n

Protein Analysis

209

Amino Acids

22.75

Weight (kDa)

9.3

Isoelectric Point (pI)

31.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021284)

Species Orthologous Gene IDs
pyrus_communis pycom14g17230
rosa_chinensis RchiOBHm_Chr7g0182501
rosa_samantha Rh7AG051400 Rh7CG052700 Rh7DG050400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 117, 146
AciI CCGC 1 cut(s) 146
AcsI RAATTY 3 cut(s) 169, 460, 594
AfaI GTAC 2 cut(s) 14, 582
AfiI CCNNNNNNNGG 3 cut(s) 100, 329, 359
AflII CTTAAG 1 cut(s) 278
AgsI TTSAA 1 cut(s) 135
AleI CACNNNNGTG 1 cut(s) 53
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
AluBI AGCT 4 cut(s) 230, 526, 562, 576
AluI AGCT 4 cut(s) 230, 526, 562, 576
Alw26I GTCTC 1 cut(s) 551
ApeKI GCWGC 2 cut(s) 230, 505
ApoI RAATTY 3 cut(s) 169, 460, 594
ArsI GACNNNNNNTTYG 2 cut(s) 369, 401
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 2 cut(s) 117, 146
AspS9I GGNCC 2 cut(s) 320, 385
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 2 cut(s) 320, 385
BanII GRGCYC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 217, 492
BccI CCATC 4 cut(s) 311, 351, 413, 497
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 551
BfmI CTRYAG 1 cut(s) 21
BfrI CTTAAG 1 cut(s) 278
BisI GCNGC 2 cut(s) 231, 506
BlsI GCNGC 2 cut(s) 232, 507
BmcAI AGTACT 1 cut(s) 582
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 2 cut(s) 320, 385
BmgT120I GGNCC 2 cut(s) 320, 385
BmiI GGNNCC 3 cut(s) 105, 365, 521
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 2 cut(s) 68, 320
BpmI CTGGAG 2 cut(s) 236, 506
BpuMI CCSGG 1 cut(s) 431
BsaJI CCNNGG 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 329, 359
Bse1I ACTGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 2 cut(s) 424, 426
BseLI CCNNNNNNNGG 3 cut(s) 100, 329, 359
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 2 cut(s) 217, 492
Bsh1236I CGCG 2 cut(s) 117, 146
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 3 cut(s) 100, 329, 359
BsmAI GTCTC 1 cut(s) 551
BsmBI CGTCTC 1 cut(s) 551
BsmFI GGGAC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 1 cut(s) 146
BspFNI CGCG 2 cut(s) 117, 146
BspLI GGNNCC 3 cut(s) 105, 365, 521
BspMAI CTGCAG 1 cut(s) 25
BspTI CTTAAG 1 cut(s) 278
BsrI ACTGG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 196, 289, 324
BstAFI CTTAAG 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 35, 589
BstDEI CTNAG 2 cut(s) 368, 577
BstF5I GGATG 2 cut(s) 424, 426
BstFNI CGCG 2 cut(s) 117, 146
BstHHI GCGC 2 cut(s) 117, 146
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 2 cut(s) 117, 146
BstV1I GCAGC 2 cut(s) 217, 492
BtsCI GGATG 2 cut(s) 424, 426
BtsIMutI CAGTG 2 cut(s) 192, 246
Cac8I GCNNGC 2 cut(s) 35, 589
CfoI GCGC 2 cut(s) 117, 146
Cfr13I GGNCC 2 cut(s) 320, 385
Csp6I GTAC 2 cut(s) 13, 581
CviAII CATG 1 cut(s) 294
CviJI RGCY 7 cut(s) 8, 104, 230, 520, 526, 562, 576
CviKI_1 RGCY 7 cut(s) 8, 104, 230, 520, 526, 562, 576
CviQI GTAC 2 cut(s) 13, 581
DdeI CTNAG 2 cut(s) 368, 577
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 320, 385
EcoT14I CCWWGG 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 414
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 1 cut(s) 297
FaiI YATR 9 cut(s) 28, 46, 68, 123, 152, 167, 295, 570, 601
FaqI GGGAC 1 cut(s) 84
FatI CATG 1 cut(s) 293
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 231, 506
FokI GGATG 2 cut(s) 413, 431
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 231, 506
GlaI GCGC 2 cut(s) 116, 145
GluI GCNGC 2 cut(s) 231, 506
GsuI CTGGAG 2 cut(s) 236, 506
HapII CCGG 1 cut(s) 431
HhaI GCGC 2 cut(s) 117, 146
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 2 cut(s) 115, 144
HinP1I GCGC 2 cut(s) 115, 144
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 349
HpaII CCGG 1 cut(s) 431
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 183, 316, 348
Hpy188III TCNNGA 3 cut(s) 215, 240, 627
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4III ACNGT 3 cut(s) 196, 289, 324
HpyCH4V TGCA 4 cut(s) 23, 33, 48, 591
HpyF3I CTNAG 2 cut(s) 368, 577
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 2 cut(s) 115, 144
Kzo9I GATC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 109, 525
LpnPI CCDG 7 cut(s) 19, 200, 234, 444, 456, 536, 570
Lsp1109I GCAGC 2 cut(s) 217, 492
LweI GCATC 2 cut(s) 68, 320
MaeIII GTNAC 2 cut(s) 269, 324
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MfeI CAATTG 1 cut(s) 613
MhlI GDGCHC 1 cut(s) 106
MluCI AATT 9 cut(s) 63, 169, 262, 408, 434, 460, 594, 613, 620
MlyI GAGTC 1 cut(s) 343
MnlI CCTC 4 cut(s) 248, 477, 490, 510
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 4 cut(s) 173, 204, 279, 306
MslI CAYNNNNRTG 1 cut(s) 53
MspA1I CMGCKG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 278
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 613
MvnI CGCG 2 cut(s) 117, 146
NciI CCSGG 1 cut(s) 431
NdeII GATC 1 cut(s) 236
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 3 cut(s) 105, 365, 521
NmuCI GTSAC 1 cut(s) 269
OliI CACNNNNGTG 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 444
PfoI TCCNGGA 1 cut(s) 429
PkrI GCNGC 2 cut(s) 232, 507
PleI GAGTC 1 cut(s) 343
PpsI GAGTC 1 cut(s) 343
PspN4I GGNNCC 3 cut(s) 105, 365, 521
PspPI GGNCC 2 cut(s) 320, 385
PstI CTGCAG 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 2 cut(s) 14, 582
RsaNI GTAC 2 cut(s) 13, 581
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 4 cut(s) 173, 204, 279, 306
SatI GCNGC 2 cut(s) 231, 506
Sau3AI GATC 1 cut(s) 236
Sau96I GGNCC 2 cut(s) 320, 385
ScaI AGTACT 1 cut(s) 582
SchI GAGTC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 106
SetI ASST 7 cut(s) 232, 369, 445, 482, 528, 564, 578
SfaNI GCATC 2 cut(s) 68, 320
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 2 cut(s) 320, 385
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 9 cut(s) 63, 169, 262, 408, 434, 460, 594, 613, 620
SsiI CCGC 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 3 cut(s) 196, 289, 324
TaqI TCGA 1 cut(s) 235
TaqII GACCGA 2 cut(s) 200, 257
TasI AATT 9 cut(s) 63, 169, 262, 408, 434, 460, 594, 613, 620
TatI WGTACW 2 cut(s) 12, 580
Tru1I TTAA 4 cut(s) 173, 204, 279, 306
Tru9I TTAA 4 cut(s) 173, 204, 279, 306
TscAI CASTG 2 cut(s) 199, 253
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 2 cut(s) 230, 505
Tsp45I GTSAC 1 cut(s) 269
TspGWI ACGGA 3 cut(s) 31, 288, 345
TspRI CASTG 2 cut(s) 199, 253
Vha464I CTTAAG 1 cut(s) 278
VpaK11BI GGWCC 2 cut(s) 320, 385
XapI RAATTY 3 cut(s) 169, 460, 594
XmnI GAANNNNTTC 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.