Rh7CG052700

heparanase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0021284
Physical Location & Seq
Forward (+)
3817069 .. 3817654
586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG052700.1

Sequence Viewer

Length: 471 bp
ATGGGACAAAATGTTCTTGCTGTTGACCACAACGGGGCTCCACACTTGTTCGTTTATGCTCATTGTTCAAAAGGAAGCGCGGGTATAACCCTACTCATCATAAATTTAAGCAATCAGACCGATTTCACTGTCAATGTTAAAAATGTTCTGGAGTTTGATACAGCTGCTCGATCAAGAAACACTGGCAAAGGAAGTAATTTCAGTCACGGACTTAAGAGAACGGTGTCATGGGTTGGTCTCAAAGCATCAGATGGACCGTTACACGGAAAAGAATACCATCTGACTCCAAAAGACGGGAACCTTAGAAACAAAATAATGGTCCTAAATGGAGTTCCATTGGAAATTACCAAGGATGGAAACATCCCGGAATTAGAACCTGTTCTTGTTCCCACAAATTCTCCTCTATCAATCACCTCTTTGCCCATCAAGTTTGTTGTGCTGCCTCACTCTGAGGCTCCAGCTTGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko05205 map00531 map01100 map05205
Pfam Domains
Protein Families
Glyco_hydro_79n

Protein Analysis

156

Amino Acids

16.8

Weight (kDa)

8.98

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021284)

Species Orthologous Gene IDs
pyrus_communis pycom14g17230
rosa_chinensis RchiOBHm_Chr7g0182501
rosa_samantha Rh7AG051400 Rh7CG052700 Rh7DG050400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 103, 394
AfiI CCNNNNNNNGG 3 cut(s) 34, 263, 293
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 69
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 2 cut(s) 164, 461
AluI AGCT 2 cut(s) 164, 461
Alw26I GTCTC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 164, 439
ApoI RAATTY 2 cut(s) 103, 394
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 2 cut(s) 254, 319
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 2 cut(s) 254, 319
BanII GRGCYC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 151, 426
BccI CCATC 4 cut(s) 245, 285, 347, 431
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 242
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 2 cut(s) 165, 440
BlsI GCNGC 2 cut(s) 166, 441
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 2 cut(s) 254, 319
BmgT120I GGNCC 2 cut(s) 254, 319
BmiI GGNNCC 3 cut(s) 39, 299, 456
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 254
BpmI CTGGAG 2 cut(s) 170, 441
BpuMI CCSGG 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 263, 293
Bse1I ACTGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 358, 360
BseLI CCNNNNNNNGG 3 cut(s) 34, 263, 293
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 151, 426
Bsh1236I CGCG 1 cut(s) 80
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 34, 263, 293
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 170
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 3 cut(s) 39, 299, 456
BspTI CTTAAG 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 3 cut(s) 130, 223, 258
BstAFI CTTAAG 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 302, 450
BstF5I GGATG 2 cut(s) 358, 360
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 363
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 151, 426
BtsCI GGATG 2 cut(s) 358, 360
BtsIMutI CAGTG 2 cut(s) 126, 180
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 254, 319
CviAII CATG 1 cut(s) 228
CviJI RGCY 4 cut(s) 38, 164, 455, 461
CviKI_1 RGCY 4 cut(s) 38, 164, 455, 461
DdeI CTNAG 2 cut(s) 302, 450
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 254, 319
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 1 cut(s) 231
FaiI YATR 4 cut(s) 57, 86, 101, 229
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 227
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 165, 440
FokI GGATG 2 cut(s) 347, 365
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 165, 440
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 165, 440
GsuI CTGGAG 2 cut(s) 170, 441
HapII CCGG 1 cut(s) 365
HhaI GCGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 231
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 283
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 4 cut(s) 117, 250, 282, 451
Hpy188III TCNNGA 2 cut(s) 149, 174
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4III ACNGT 3 cut(s) 130, 223, 258
HpyF3I CTNAG 2 cut(s) 302, 450
Hsp92II CATG 1 cut(s) 231
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 43, 460
LpnPI CCDG 4 cut(s) 134, 168, 378, 390
Lsp1109I GCAGC 2 cut(s) 151, 426
LweI GCATC 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 203, 258
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 5 cut(s) 103, 196, 342, 368, 394
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 4 cut(s) 411, 424, 445, 453
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 3 cut(s) 107, 138, 213
MspA1I CMGCKG 1 cut(s) 164
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 80
NciI CCSGG 1 cut(s) 365
NdeII GATC 1 cut(s) 170
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 3 cut(s) 39, 299, 456
NmuCI GTSAC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 378
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 2 cut(s) 166, 441
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PspN4I GGNNCC 3 cut(s) 39, 299, 456
PspPI GGNCC 2 cut(s) 254, 319
PvuII CAGCTG 1 cut(s) 164
SaqAI TTAA 3 cut(s) 107, 138, 213
SatI GCNGC 2 cut(s) 165, 440
Sau3AI GATC 1 cut(s) 170
Sau96I GGNCC 2 cut(s) 254, 319
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 40
SetI ASST 5 cut(s) 166, 303, 379, 416, 463
SfaNI GCATC 1 cut(s) 254
SinI GGWCC 2 cut(s) 254, 319
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 5 cut(s) 103, 196, 342, 368, 394
SsiI CCGC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 130, 223, 258
TaqI TCGA 1 cut(s) 169
TaqII GACCGA 1 cut(s) 134
TasI AATT 5 cut(s) 103, 196, 342, 368, 394
Tru1I TTAA 3 cut(s) 107, 138, 213
Tru9I TTAA 3 cut(s) 107, 138, 213
TscAI CASTG 2 cut(s) 133, 187
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 164, 439
Tsp45I GTSAC 1 cut(s) 203
TspGWI ACGGA 2 cut(s) 222, 279
TspRI CASTG 2 cut(s) 133, 187
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 254, 319
XapI RAATTY 2 cut(s) 103, 394
XmnI GAANNNNTTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.