Rh7AG051400

heparanase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0021284
Physical Location & Seq
Forward (+)
3517828 .. 3518507
680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG051400.1

Sequence Viewer

Length: 564 bp
ATGGGACAAAATGTTCTTGCTATTGACCACAACGGGGCTCCACACTTGCGCGTTTATGCTCATTGTTCAAAAGGAAGCGCGGGTATAACCCTACTCATCATAAATTTAAGCAATCAGACCGATTTCACTGTCAATGTTAAAAATGTTCTGGAGTTTGATACAGCTGCTCGATCAAGAAACACTGGCAAAGGAAGTAATTTCAGTCACGGACTTAAGAGAACGGTGTCATGGGTTGGTCTTAAAGCATCAGATGGACCGTTACACGGAAAAGAATACCATCTGACTCCAAAAGACGGGAACCTTAGAAACAAAATAATGGTCCTAAATGGAGTTCCATTGGAAATTACCAAGGATGGAAACATCCCGGAATTAGAACCTGTTCTTGTTCCCACAAATTCTCCTCTATCAATCACCTCTTTGTCCATCAAGTTTGTTGTGCTGCTCACTTTGAGGCTCCAGCTTGTAGATGATTTCTCTCGTCTCAACCCCCCAGAGCTTCTGTATGTTAGCTTAGTACTTGCTTGCAGAATTTTATGGGCAAATGGCAATTGTAAATTGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko05205 map00531 map01100 map05205
Pfam Domains
Protein Families
Glyco_hydro_79n

Protein Analysis

187

Amino Acids

20.4

Weight (kDa)

9.24

Isoelectric Point (pI)

27.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021284)

Species Orthologous Gene IDs
pyrus_communis pycom14g17230
rosa_chinensis RchiOBHm_Chr7g0182501
rosa_samantha Rh7AG051400 Rh7CG052700 Rh7DG050400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 51, 80
AciI CCGC 1 cut(s) 80
AcsI RAATTY 3 cut(s) 103, 394, 528
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 3 cut(s) 34, 263, 293
AflII CTTAAG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 69
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 4 cut(s) 164, 460, 496, 510
AluI AGCT 4 cut(s) 164, 460, 496, 510
Alw26I GTCTC 1 cut(s) 485
ApeKI GCWGC 2 cut(s) 164, 439
ApoI RAATTY 3 cut(s) 103, 394, 528
ArsI GACNNNNNNTTYG 2 cut(s) 303, 335
Asp700I GAANNNNTTC 1 cut(s) 378
AspLEI GCGC 2 cut(s) 51, 80
AspS9I GGNCC 2 cut(s) 254, 319
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 403
AvaII GGWCC 2 cut(s) 254, 319
BanII GRGCYC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 151, 426
BccI CCATC 4 cut(s) 245, 285, 347, 431
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 485
BfrI CTTAAG 1 cut(s) 212
BisI GCNGC 2 cut(s) 165, 440
BlsI GCNGC 2 cut(s) 166, 441
BmcAI AGTACT 1 cut(s) 516
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 2 cut(s) 254, 319
BmgT120I GGNCC 2 cut(s) 254, 319
BmiI GGNNCC 3 cut(s) 39, 299, 455
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 254
BpmI CTGGAG 2 cut(s) 170, 440
BpuMI CCSGG 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 348
BsaXI ACNNNNNCTCC 2 cut(s) 382, 412
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 263, 293
Bse1I ACTGG 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 358, 360
BseLI CCNNNNNNNGG 3 cut(s) 34, 263, 293
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 151, 426
Bsh1236I CGCG 2 cut(s) 51, 80
BsiSI CCGG 1 cut(s) 365
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 34, 263, 293
BsmAI GTCTC 1 cut(s) 485
BsmBI CGTCTC 1 cut(s) 485
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 170
BspACI CCGC 1 cut(s) 80
BspFNI CGCG 2 cut(s) 51, 80
BspLI GGNNCC 3 cut(s) 39, 299, 455
BspTI CTTAAG 1 cut(s) 212
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 348
Bst4CI ACNGT 3 cut(s) 130, 223, 258
BstAFI CTTAAG 1 cut(s) 212
BstC8I GCNNGC 1 cut(s) 523
BstDEI CTNAG 2 cut(s) 302, 511
BstF5I GGATG 2 cut(s) 358, 360
BstFNI CGCG 2 cut(s) 51, 80
BstHHI GCGC 2 cut(s) 51, 80
BstKTI GATC 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 363
BstUI CGCG 2 cut(s) 51, 80
BstV1I GCAGC 2 cut(s) 151, 426
BtsCI GGATG 2 cut(s) 358, 360
BtsIMutI CAGTG 2 cut(s) 126, 180
Cac8I GCNNGC 1 cut(s) 523
CfoI GCGC 2 cut(s) 51, 80
Cfr13I GGNCC 2 cut(s) 254, 319
Csp6I GTAC 1 cut(s) 515
CviAII CATG 1 cut(s) 228
CviJI RGCY 6 cut(s) 38, 164, 454, 460, 496, 510
CviKI_1 RGCY 6 cut(s) 38, 164, 454, 460, 496, 510
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 2 cut(s) 302, 511
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 348
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 254, 319
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 1 cut(s) 231
FaiI YATR 6 cut(s) 57, 86, 101, 229, 504, 535
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 227
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 165, 440
FokI GGATG 2 cut(s) 347, 365
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 2 cut(s) 165, 440
GlaI GCGC 2 cut(s) 50, 79
GluI GCNGC 2 cut(s) 165, 440
GsuI CTGGAG 2 cut(s) 170, 440
HapII CCGG 1 cut(s) 365
HhaI GCGC 2 cut(s) 51, 80
Hin1II CATG 1 cut(s) 231
Hin6I GCGC 2 cut(s) 49, 78
HinP1I GCGC 2 cut(s) 49, 78
HinfI GANTC 1 cut(s) 283
HpaII CCGG 1 cut(s) 365
HphI GGTGA 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 117, 250, 282
Hpy188III TCNNGA 3 cut(s) 149, 174, 561
HpyCH4III ACNGT 3 cut(s) 130, 223, 258
HpyCH4V TGCA 1 cut(s) 525
HpyF3I CTNAG 2 cut(s) 302, 511
Hsp92II CATG 1 cut(s) 231
HspAI GCGC 2 cut(s) 49, 78
Kzo9I GATC 1 cut(s) 170
LmnI GCTCC 2 cut(s) 43, 459
LpnPI CCDG 6 cut(s) 134, 168, 378, 390, 470, 504
Lsp1109I GCAGC 2 cut(s) 151, 426
LweI GCATC 1 cut(s) 254
MaeIII GTNAC 2 cut(s) 203, 258
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MfeI CAATTG 1 cut(s) 547
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 8 cut(s) 103, 196, 342, 368, 394, 528, 547, 554
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 3 cut(s) 411, 424, 444
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 4 cut(s) 107, 138, 213, 240
MspA1I CMGCKG 1 cut(s) 164
MspCI CTTAAG 1 cut(s) 212
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 1 cut(s) 547
MvnI CGCG 2 cut(s) 51, 80
NciI CCSGG 1 cut(s) 365
NdeII GATC 1 cut(s) 170
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 3 cut(s) 39, 299, 455
NmuCI GTSAC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 378
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 2 cut(s) 166, 441
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PspN4I GGNNCC 3 cut(s) 39, 299, 455
PspPI GGNCC 2 cut(s) 254, 319
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
SaqAI TTAA 4 cut(s) 107, 138, 213, 240
SatI GCNGC 2 cut(s) 165, 440
Sau3AI GATC 1 cut(s) 170
Sau96I GGNCC 2 cut(s) 254, 319
ScaI AGTACT 1 cut(s) 516
SchI GAGTC 1 cut(s) 277
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 1 cut(s) 40
SetI ASST 7 cut(s) 166, 303, 379, 416, 462, 498, 512
SfaNI GCATC 1 cut(s) 254
SinI GGWCC 2 cut(s) 254, 319
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 8 cut(s) 103, 196, 342, 368, 394, 528, 547, 554
SsiI CCGC 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 130, 223, 258
TaqI TCGA 1 cut(s) 169
TaqII GACCGA 1 cut(s) 134
TasI AATT 8 cut(s) 103, 196, 342, 368, 394, 528, 547, 554
TatI WGTACW 1 cut(s) 514
Tru1I TTAA 4 cut(s) 107, 138, 213, 240
Tru9I TTAA 4 cut(s) 107, 138, 213, 240
TscAI CASTG 2 cut(s) 133, 187
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 2 cut(s) 164, 439
Tsp45I GTSAC 1 cut(s) 203
TspGWI ACGGA 2 cut(s) 222, 279
TspRI CASTG 2 cut(s) 133, 187
Vha464I CTTAAG 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 254, 319
XapI RAATTY 3 cut(s) 103, 394, 528
XmnI GAANNNNTTC 1 cut(s) 378
ZrmI AGTACT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.