RchiOBHm_Chr7g0189891

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0021872
Physical Location & Seq
Reverse (-)
9196446 .. 9198513
2068 bp
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UTR
Exon/CDS
Intron
PRQ16959

Sequence Viewer

Length: 408 bp
ATGGGGGCGGATTGGGGACCGGTGATCGTAGCGGTGGTGCTGTTCGTTCTGTTGACTCCTGGGCTCATGTTTCAGATTCCGGCCAAGGGGAGGGTGGCGGAGTTTGGGAATATGCAGACAAGTCTTCCCTCCATAGTTGTACACGCCCTCATCTACTTCGGGCTGCTCACCGTCCTCCTTATTGCTATAGGTGCAACAATGGCGGATTGGGGCCCGGTGATCGTAGCGGTGGTGTTGTTTGTGCTGTTGACTCCAGGGCTTTTGTTTCAGATACCGGGAAGGGGGAGGGTGGTGGAGTTTGGGAACATGCAGACCAGTGGTGCCTCCATTGTCGTACATGCCATCATCTACTTTGGGCTTCTCACCATCTTCCTTATCGCCATCGGTGTTCATATCTATGCCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

135

Amino Acids

14.29

Weight (kDa)

6.81

Isoelectric Point (pI)

11.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 3 - 64 1.2e-29 Protein of unknown function (DUF3339)
DUF3339 PF11820 67 - 133 4e-36 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0021872)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189891
rosa_rugosa Rorug06G0500800 Rorug07G0002000
rosa_wichuraiana Rw7G009190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AciI CCGC 5 cut(s) 8, 32, 98, 203, 227
AcoI YGGCCR 1 cut(s) 81
AfaI GTAC 2 cut(s) 141, 336
AfiI CCNNNNNNNGG 3 cut(s) 86, 90, 281
AgeI ACCGGT 1 cut(s) 19
AjnI CCWGG 2 cut(s) 58, 253
AoxI GGCC 2 cut(s) 81, 211
ApaI GGGCCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 163
AsiGI ACCGGT 1 cut(s) 19
AspS9I GGNCC 3 cut(s) 17, 211, 212
AsuC2I CCSGG 2 cut(s) 215, 276
AsuHPI GGTGA 4 cut(s) 34, 160, 229, 355
AvaII GGWCC 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 66, 215
BbsI GAAGAC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 150
BccI CCATC 3 cut(s) 350, 374, 389
BciT130I CCWGG 2 cut(s) 60, 255
BcnI CCSGG 2 cut(s) 215, 276
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 4 cut(s) 60, 215, 255, 276
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 3 cut(s) 17, 211, 212
BmiI GGNNCC 4 cut(s) 18, 212, 213, 322
BmrFI CCNGG 4 cut(s) 60, 215, 255, 276
BpiI GAAGAC 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 215, 276
BsaJI CCNNGG 3 cut(s) 59, 84, 254
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 90, 281
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 315
BseBI CCWGG 2 cut(s) 60, 255
BseDI CCNNGG 3 cut(s) 59, 84, 254
BseLI CCNNNNNNNGG 3 cut(s) 86, 90, 281
BseNI ACTGG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 150
BshFI GGCC 2 cut(s) 83, 213
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 19
BsiSI CCGG 5 cut(s) 20, 80, 215, 275, 402
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 86, 90, 281
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 2 cut(s) 83, 213
Bsp120I GGGCCC 1 cut(s) 211
Bsp1286I GDGCHC 2 cut(s) 66, 215
Bsp1407I TGTACA 1 cut(s) 139
Bsp143I GATC 2 cut(s) 24, 219
BspACI CCGC 5 cut(s) 8, 32, 98, 203, 227
BspANI GGCC 2 cut(s) 83, 213
BspLI GGNNCC 4 cut(s) 18, 212, 213, 322
BspT107I GGYRCC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 139
BsrI ACTGG 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 3 cut(s) 59, 84, 254
BssMI GATC 2 cut(s) 24, 219
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 60, 255
Bst4CI ACNGT 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 139
BstKTI GATC 2 cut(s) 27, 222
BstMBI GATC 2 cut(s) 24, 219
BstMWI GCNNNNNNNGC 2 cut(s) 191, 200
BstNI CCWGG 2 cut(s) 60, 255
BstNSI RCATGY 2 cut(s) 310, 341
BstSCI CCNGG 4 cut(s) 58, 213, 253, 274
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 83, 213
BtsIMutI CAGTG 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 3 cut(s) 17, 211, 212
Csp6I GTAC 2 cut(s) 140, 335
CspAI ACCGGT 1 cut(s) 19
CviAII CATG 3 cut(s) 67, 307, 338
CviJI RGCY 6 cut(s) 64, 83, 163, 213, 259, 358
CviKI_1 RGCY 6 cut(s) 64, 83, 163, 213, 259, 358
CviQI GTAC 2 cut(s) 140, 335
DpnI GATC 2 cut(s) 26, 221
DpnII GATC 2 cut(s) 24, 219
EaeI YGGCCR 1 cut(s) 81
EciI GGCGGA 3 cut(s) 23, 113, 218
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 2 cut(s) 66, 215
Eco47I GGWCC 1 cut(s) 17
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 2 cut(s) 58, 253
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 2 cut(s) 66, 215
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 3 cut(s) 70, 310, 341
FaiI YATR 8 cut(s) 68, 113, 134, 188, 308, 339, 393, 399
FaqI GGGAC 1 cut(s) 30
FatI CATG 3 cut(s) 66, 306, 337
Fnu4HI GCNGC 1 cut(s) 164
FriOI GRGCYC 2 cut(s) 66, 215
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 2 cut(s) 83, 213
HapII CCGG 5 cut(s) 20, 80, 215, 275, 402
Hin1II CATG 3 cut(s) 70, 310, 341
HincII GTYRAC 2 cut(s) 54, 249
HindII GTYRAC 2 cut(s) 54, 249
HinfI GANTC 3 cut(s) 55, 76, 250
HpaII CCGG 5 cut(s) 20, 80, 215, 275, 402
HphI GGTGA 4 cut(s) 34, 160, 229, 355
Hpy166II GTNNAC 3 cut(s) 54, 142, 249
Hpy188I TCNGA 2 cut(s) 75, 270
Hpy8I GTNNAC 3 cut(s) 54, 142, 249
HpyAV CCTTC 1 cut(s) 273
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 3 cut(s) 115, 194, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 200
Hsp92II CATG 3 cut(s) 70, 310, 341
Kzo9I GATC 2 cut(s) 24, 219
LpnPI CCDG 9 cut(s) 33, 45, 72, 93, 228, 240, 267, 288, 328
Lsp1109I GCAGC 1 cut(s) 150
MalI GATC 2 cut(s) 26, 221
MboI GATC 2 cut(s) 24, 219
MboII GAAGA 2 cut(s) 116, 361
MhlI GDGCHC 2 cut(s) 66, 215
MlyI GAGTC 2 cut(s) 49, 244
MnlI CCTC 6 cut(s) 84, 139, 158, 185, 279, 334
MslI CAYNNNNRTG 1 cut(s) 396
MspI CCGG 5 cut(s) 20, 80, 215, 275, 402
MspR9I CCNGG 4 cut(s) 60, 215, 255, 276
MvaI CCWGG 2 cut(s) 60, 255
MwoI GCNNNNNNNGC 2 cut(s) 191, 200
NciI CCSGG 2 cut(s) 215, 276
NdeII GATC 2 cut(s) 24, 219
NlaIII CATG 3 cut(s) 70, 310, 341
NlaIV GGNNCC 4 cut(s) 18, 212, 213, 322
NspI RCATGY 2 cut(s) 310, 341
PfeI GAWTC 1 cut(s) 76
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 2 cut(s) 49, 244
PpsI GAGTC 2 cut(s) 49, 244
Psp6I CCWGG 2 cut(s) 58, 253
PspGI CCWGG 2 cut(s) 58, 253
PspN4I GGNNCC 4 cut(s) 18, 212, 213, 322
PspOMI GGGCCC 1 cut(s) 211
PspPI GGNCC 3 cut(s) 17, 211, 212
RsaI GTAC 2 cut(s) 141, 336
RsaNI GTAC 2 cut(s) 140, 335
RseI CAYNNNNRTG 1 cut(s) 396
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 24, 219
Sau96I GGNCC 3 cut(s) 17, 211, 212
SchI GAGTC 2 cut(s) 49, 244
ScrFI CCNGG 4 cut(s) 60, 215, 255, 276
SduI GDGCHC 2 cut(s) 66, 215
SetI ASST 1 cut(s) 193
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 396
SsiI CCGC 5 cut(s) 8, 32, 98, 203, 227
StyD4I CCNGG 4 cut(s) 58, 213, 253, 274
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 172
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 380
TspRI CASTG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 17
XceI RCATGY 2 cut(s) 310, 341
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.