Rorug07G0002000

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0021872
Physical Location & Seq
Forward (+)
243502 .. 246670
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0002000.1

Sequence Viewer

Length: 2115 bp
ATGTCTCAAGAGTACCAAAAACCGGAACAAGTAGACGAGGATCCGAACCAGAAGAGGAAGCGCGGCAAGGAAGATCATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGAGAGGTGCAATCGGTGGAAAGGCTGTTCGCAAAGCAAGAAGTGCCGTCATGGACGAGGCAGCTGACGTTCCGAGCATTCATAATAAGCGGCCTGCTGAGTGTGCTGTTCAGCGTGATAGTGATGAAGCTGAACCTGACGACCGGTATCATACCATCTCTGAACGTGTCGGCGGGGCTGTTGGGTTTCTTCTTCGTGAGCACTTGGACCAAGATCCTGAGAAAAGCAGGCTTCTTGACCCAGCCCTTCACCAGGCAAGAGAACACCGTCATCCAGACCTGCATCGTTGCTTCCTCCGGCATCGCCTTCAGCGGAGGTTTCGGCAGCTATCTCTTTGGTTTGAGTGATCGAATCGCAGCCCAATCTAGTGACACCGGTGATACCAAGAACCCAGGTTTGCTGTGGATTATTGGCTTTCTCTTTGTTGTCAGCTTCCTCGGCCTCTTCTCAGTCGTGCCTCTTCGAAAGATTATGATCATAGACTTCAAATTGACATATCCCAGTGGTACTGCAACTGCTCTTCTCATCAACAGTTTCCACACTCCTGCAGGAGCCAAGCTAGCAAAGAAACAAGTCAAGGAGTTGGGAAAATTCTTCTCTTTCAGTTTCTTGTGGGGTTTCTTTCAATGGTTCTATACTGGCGAAGGTGACTGCGGATTTTCAAACTTCCCTTCACTCGGTCTTAAAGCATATCAGAATAAGTTTTACTTCGACTTCTCAGCAACATATGTTGGAGTAGGGATGATTTGCCCCTACATTGTAAACATATCGGTGCTTCTTGGAGGCATTATTTCTTGGGGTTTGATGTGGCCTCTCATATGGAATAAGAGGGGTGATTGGTATAAAGCAGAGCTTAGCCCAACAAGCATGAATGGCCTTCAAGCTTACAAGGTCTTCATTGCCATTGCCATGATCCTTGGTGACGGACTATACAACTTCTTCAAGGTGCTAGGTCGAACTCTCTCTGCCTTGTATGTTCAACTCCGACAAAAAGATGTGAGCGGCATTCTTCCAGTGGCAGATCAAGCCTCTTCTGTAAGCTTGGAGCAGCTCTCTTATGATGACCAGCGCCGAACCCAACTCTTTCTCAAAGACCAAATTCCAGCATGGTTTGCTGCTGCGGGCTATGTTGGAATTGCTGCCATCTCCATAGCCACTGTACCACACATATTTCCCCAACTTAAGTGGTATTATGTATTGGTCATCTACCTCATTGCACCCACCTTGGCTTTCTGTAATGCATATGGGTGTGGGCTCACTGATTGGTCCCTGGCATCCACATATGGAAAGGTCGCCATCTTTACCATTGGGGCATGGGCAGGTTCCTCCCACGGTGGTGTTATTGCAGGACTAGCAGCTTGTGGAGTCATGATGAACATCGTTTCAACAGCTTCTGATTTAACCCAAGATTTCAAGACCGGCTACCTAACCTTGGCTTCTCCCCGATCAATGTTTGTAAGCCAAATTATTGGGACAGCAATGGGTTGTGTGATTTCTCCTAGTGTGTTTTGGCTCTTCTATAAGGCCTTCCCTGACATGGGCAAACCCAACAGTGCATATCCTGCTCCCTATGCTGTTGTGTACCGTAACATGGCTATTTTGGCAGTAGAAGGTCTCGATTATCTGCCTAAGAATTGCCTCTTGCTTTGTGGCGTGTTCTTTGGTGCAGCCATTCTTATAAACCTGATAAAGGATTGCATTGGTAAGAAGAAGGCACGCTTCATTCCACTACCAATGGCAATGGCTATACCTTTCTATATAGGGCCATATTTTGCGATTGATATGTGCCTTGGGAGCGTGATCAAGTTTGTGTGGGAGAAGATAAACAAGGCCAAGGCAGATGCTTTTGTACCTGCAGTGGCTTCTGGTATGATCTGTGGGGATGGGATTTGGACTTTGCCTGCTTCAATACTCGCCCTTGCAGGGGTCAAGCCACCAATTTGCATGAAGTTCTTGTCAAGGGCAGATAATACTAGGGTTGATAAATTCTTAAAGGGATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

704

Amino Acids

77.51

Weight (kDa)

8.73

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 58 - 675 9.2e-165 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021872)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189891
rosa_rugosa Rorug06G0500800 Rorug07G0002000
rosa_wichuraiana Rw7G009190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1790
Acc36I ACCTGC 3 cut(s) 398, 1421, 1972
AccBSI CCGCTC 1 cut(s) 1113
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 63
AciI CCGC 7 cut(s) 63, 201, 284, 423, 765, 1113, 1232
AclWI GGATC 5 cut(s) 35, 48, 319, 1018, 2103
AcsI RAATTY 3 cut(s) 701, 1209, 2096
AcuI CTGAAG 1 cut(s) 403
AfaI GTAC 5 cut(s) 14, 619, 1272, 1694, 1962
AflII CTTAAG 1 cut(s) 1292
AflIII ACRYGT 1 cut(s) 276
AgeI ACCGGT 2 cut(s) 254, 485
AgsI TTSAA 9 cut(s) 598, 737, 774, 992, 1054, 1091, 1497, 1525, 2019
AjnI CCWGG 3 cut(s) 362, 502, 1380
AleI CACNNNNGTG 1 cut(s) 1446
AloI GAACNNNNNNTCC 2 cut(s) 122, 154
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 2 cut(s) 9, 1730
AlwI GGATC 5 cut(s) 35, 48, 319, 1018, 2103
AlwNI CAGNNNCTG 1 cut(s) 1505
AoxI GGCC 7 cut(s) 202, 550, 920, 985, 1635, 1874, 1941
ApeKI GCWGC 9 cut(s) 172, 435, 467, 1159, 1226, 1229, 1250, 1466, 1778
ApoI RAATTY 3 cut(s) 701, 1209, 2096
AsiGI ACCGGT 2 cut(s) 254, 485
AspLEI GCGC 2 cut(s) 63, 1182
AspS9I GGNCC 3 cut(s) 318, 1377, 1874
AsuHPI GGTGA 5 cut(s) 352, 500, 770, 956, 1043
AsuII TTCGAA 1 cut(s) 574
AsuNHI GCTAGC 1 cut(s) 670
AvaII GGWCC 2 cut(s) 318, 1377
BamHI GGATCC 2 cut(s) 40, 2108
BanII GRGCYC 1 cut(s) 1368
BbsI GAAGAC 1 cut(s) 997
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 9 cut(s) 184, 447, 479, 1171, 1213, 1216, 1237, 1478, 1790
BccI CCATC 4 cut(s) 274, 1262, 1415, 1988
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 3 cut(s) 364, 504, 1382
BclI TGATCA 2 cut(s) 585, 1911
BcoDI GTCTC 2 cut(s) 9, 1730
BfaI CTAG 6 cut(s) 477, 671, 1061, 1463, 1611, 2085
BfmI CTRYAG 2 cut(s) 657, 1965
BfoI RGCGCY 1 cut(s) 1183
BfrI CTTAAG 1 cut(s) 1292
BfuAI ACCTGC 3 cut(s) 398, 1421, 1972
BlpI GCTNAGC 1 cut(s) 965
Bme1390I CCNGG 3 cut(s) 364, 504, 1382
Bme18I GGWCC 2 cut(s) 318, 1377
BmgT120I GGNCC 3 cut(s) 318, 1377, 1874
BmiI GGNNCC 5 cut(s) 42, 664, 1379, 1435, 2110
BmrFI CCNGG 3 cut(s) 364, 504, 1382
BmrI ACTGGG 1 cut(s) 606
BmsI GCATC 4 cut(s) 402, 420, 1394, 1942
BmtI GCTAGC 1 cut(s) 674
BmuI ACTGGG 1 cut(s) 606
BpiI GAAGAC 1 cut(s) 997
BplI GAGNNNNNCTC 2 cut(s) 1148, 1180
Bpu1102I GCTNAGC 1 cut(s) 965
Bpu14I TTCGAA 1 cut(s) 574
BsaBI GATNNNNATC 2 cut(s) 584, 1487
BsaI GGTCTC 1 cut(s) 1730
BsaJI CCNNGG 9 cut(s) 502, 547, 1027, 1335, 1380, 1441, 1542, 1900, 1944
BsaWI WCCGGW 3 cut(s) 22, 254, 485
Bse118I RCCGGY 3 cut(s) 254, 485, 1529
Bse1I ACTGG 3 cut(s) 612, 754, 1124
Bse3DI GCAATG 5 cut(s) 1008, 1014, 1323, 1596, 1857
Bse8I GATNNNNATC 2 cut(s) 584, 1487
BseBI CCWGG 3 cut(s) 364, 504, 1382
BseDI CCNNGG 9 cut(s) 502, 547, 1027, 1335, 1380, 1441, 1542, 1900, 1944
BseGI GGATG 4 cut(s) 381, 858, 1385, 1999
BseJI GATNNNNATC 2 cut(s) 584, 1487
BseMI GCAATG 5 cut(s) 1008, 1014, 1323, 1596, 1857
BseMII CTCAG 4 cut(s) 200, 320, 573, 843
BseNI ACTGG 3 cut(s) 612, 754, 1124
BseRI GAGGAG 8 cut(s) 95, 98, 101, 104, 107, 110, 113, 116
BseXI GCAGC 9 cut(s) 184, 447, 479, 1171, 1213, 1216, 1237, 1478, 1790
BseYI CCCAGC 1 cut(s) 351
BsgI GTGCAG 1 cut(s) 1797
Bsh1236I CGCG 1 cut(s) 63
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 7 cut(s) 204, 552, 922, 987, 1637, 1876, 1943
BshTI ACCGGT 2 cut(s) 254, 485
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 5 cut(s) 23, 255, 408, 486, 1530
BslFI GGGAC 2 cut(s) 1363, 1597
BsmAI GTCTC 2 cut(s) 9, 1730
BsmFI GGGAC 2 cut(s) 1363, 1597
BsmI GAATGC 2 cut(s) 188, 1116
BsnI GGCC 7 cut(s) 204, 552, 922, 987, 1637, 1876, 1943
Bso31I GGTCTC 1 cut(s) 1730
Bsp119I TTCGAA 1 cut(s) 574
Bsp1286I GDGCHC 2 cut(s) 314, 1368
Bsp1720I GCTNAGC 1 cut(s) 965
BspACI CCGC 7 cut(s) 63, 201, 284, 423, 765, 1113, 1232
BspANI GGCC 7 cut(s) 204, 552, 922, 987, 1637, 1876, 1943
BspCNI CTCAG 4 cut(s) 201, 321, 572, 842
BspFNI CGCG 1 cut(s) 63
BspHI TCATGA 2 cut(s) 76, 1479
BspLI GGNNCC 5 cut(s) 42, 664, 1379, 1435, 2110
BspMAI CTGCAG 2 cut(s) 661, 1969
BspMI ACCTGC 3 cut(s) 398, 1421, 1972
BspOI GCTAGC 1 cut(s) 674
BspPI GGATC 5 cut(s) 35, 48, 319, 1018, 2103
BspQI GCTCTTC 2 cut(s) 636, 1631
BspT104I TTCGAA 1 cut(s) 574
BspTI CTTAAG 1 cut(s) 1292
BspTNI GGTCTC 1 cut(s) 1730
BsrBI CCGCTC 1 cut(s) 1113
BsrDI GCAATG 5 cut(s) 1008, 1014, 1323, 1596, 1857
BsrFI RCCGGY 3 cut(s) 254, 485, 1529
BsrI ACTGG 3 cut(s) 612, 754, 1124
BssAI RCCGGY 3 cut(s) 254, 485, 1529
BssECI CCNNGG 9 cut(s) 502, 547, 1027, 1335, 1380, 1441, 1542, 1900, 1944
BssT1I CCWWGG 5 cut(s) 1027, 1335, 1542, 1900, 1944
Bst2UI CCWGG 3 cut(s) 364, 504, 1382
Bst4CI ACNGT 6 cut(s) 379, 644, 1270, 1445, 1664, 1697
Bst6I CTCTTC 6 cut(s) 47, 560, 576, 636, 1147, 1631
BstAFI CTTAAG 1 cut(s) 1292
BstAPI GCANNNNNTGC 3 cut(s) 154, 1223, 1673
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 6 cut(s) 206, 340, 672, 1234, 1828, 2013
BstDEI CTNAG 6 cut(s) 209, 329, 559, 829, 965, 1740
BstDSI CCRYGG 1 cut(s) 1441
BstENI CCTNNNNNAGG 2 cut(s) 361, 1799
BstF5I GGATG 4 cut(s) 381, 858, 1385, 1999
BstFNI CGCG 1 cut(s) 63
BstH2I RGCGCY 1 cut(s) 1183
BstHHI GCGC 2 cut(s) 63, 1182
BstMAI GTCTC 2 cut(s) 9, 1730
BstMCI CGRYCG 1 cut(s) 255
BstNI CCWGG 3 cut(s) 364, 504, 1382
BstSCI CCNGG 3 cut(s) 362, 502, 1380
BstSFI CTRYAG 2 cut(s) 657, 1965
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 9 cut(s) 184, 447, 479, 1171, 1213, 1216, 1237, 1478, 1790
BstV2I GAAGAC 1 cut(s) 997
BstX2I RGATCY 3 cut(s) 40, 324, 2108
BstXI CCANNNNNNTGG 1 cut(s) 1580
BstYI RGATCY 3 cut(s) 40, 324, 2108
BsuRI GGCC 7 cut(s) 204, 552, 922, 987, 1637, 1876, 1943
BtgI CCRYGG 1 cut(s) 1441
BtgZI GCGATG 1 cut(s) 397
BtsCI GGATG 4 cut(s) 381, 858, 1385, 1999
BtsI GCAGTG 1 cut(s) 1974
BtsIMutI CAGTG 6 cut(s) 619, 1131, 1266, 1368, 1669, 1974
BveI ACCTGC 3 cut(s) 398, 1421, 1972
Cac8I GCNNGC 6 cut(s) 206, 340, 672, 1234, 1828, 2013
CaiI CAGNNNCTG 1 cut(s) 1505
CciI TCATGA 2 cut(s) 76, 1479
CfoI GCGC 2 cut(s) 63, 1182
Cfr10I RCCGGY 3 cut(s) 254, 485, 1529
Cfr13I GGNCC 3 cut(s) 318, 1377, 1874
Csp6I GTAC 5 cut(s) 13, 618, 1271, 1693, 1961
CspAI ACCGGT 2 cut(s) 254, 485
CspCI CAANNNNNGTGG 2 cut(s) 1277, 1312
CviQI GTAC 5 cut(s) 13, 618, 1271, 1693, 1961
DdeI CTNAG 6 cut(s) 209, 329, 559, 829, 965, 1740
Eam1104I CTCTTC 6 cut(s) 47, 560, 576, 636, 1147, 1631
EarI CTCTTC 6 cut(s) 47, 560, 576, 636, 1147, 1631
Eco130I CCWWGG 5 cut(s) 1027, 1335, 1542, 1900, 1944
Eco147I AGGCCT 1 cut(s) 1637
Eco24I GRGCYC 1 cut(s) 1368
Eco31I GGTCTC 1 cut(s) 1730
Eco47I GGWCC 2 cut(s) 318, 1377
Eco57I CTGAAG 1 cut(s) 403
EcoNI CCTNNNNNAGG 2 cut(s) 361, 1799
EcoRII CCWGG 3 cut(s) 362, 502, 1380
EcoT14I CCWWGG 5 cut(s) 1027, 1335, 1542, 1900, 1944
EcoT22I ATGCAT 1 cut(s) 1354
EcoT38I GRGCYC 1 cut(s) 1368
ErhI CCWWGG 5 cut(s) 1027, 1335, 1542, 1900, 1944
FalI AAGNNNNNCTT 6 cut(s) 803, 835, 948, 980, 1814, 1846
FaqI GGGAC 2 cut(s) 1363, 1597
FauI CCCGC 2 cut(s) 277, 1225
FauNDI CATATG 4 cut(s) 838, 929, 1354, 1393
FbaI TGATCA 2 cut(s) 585, 1911
FblI GTMKAC 1 cut(s) 33
FokI GGATG 4 cut(s) 368, 865, 1372, 2006
FriOI GRGCYC 1 cut(s) 1368
FspBI CTAG 6 cut(s) 477, 671, 1061, 1463, 1611, 2085
GlaI GCGC 2 cut(s) 62, 1181
GsaI CCCAGC 1 cut(s) 355
HaeII RGCGCY 1 cut(s) 1183
HaeIII GGCC 7 cut(s) 204, 552, 922, 987, 1637, 1876, 1943
HapII CCGG 5 cut(s) 23, 255, 408, 486, 1530
HhaI GCGC 2 cut(s) 63, 1182
Hin6I GCGC 2 cut(s) 61, 1180
HinP1I GCGC 2 cut(s) 61, 1180
HindIII AAGCTT 2 cut(s) 993, 1150
HinfI GANTC 2 cut(s) 462, 1476
HpaII CCGG 5 cut(s) 23, 255, 408, 486, 1530
HphI GGTGA 5 cut(s) 352, 500, 770, 956, 1043
Hpy166II GTNNAC 3 cut(s) 34, 874, 1693
Hpy188I TCNGA 6 cut(s) 45, 185, 273, 807, 1097, 1507
Hpy188III TCNNGA 9 cut(s) 8, 77, 307, 328, 346, 385, 1480, 1525, 1727
Hpy8I GTNNAC 3 cut(s) 34, 874, 1693
HpyAV CCTTC 9 cut(s) 104, 367, 427, 749, 792, 998, 1648, 1715, 1816
HpyCH4III ACNGT 6 cut(s) 379, 644, 1270, 1445, 1664, 1697
HpyCH4IV ACGT 2 cut(s) 179, 276
HpyF3I CTNAG 6 cut(s) 209, 329, 559, 829, 965, 1740
HpySE526I ACGT 2 cut(s) 179, 276
HspAI GCGC 2 cut(s) 61, 1180
Ksp22I TGATCA 2 cut(s) 585, 1911
LguI GCTCTTC 2 cut(s) 636, 1631
LmnI GCTCC 4 cut(s) 662, 1156, 1681, 1905
Lsp1109I GCAGC 9 cut(s) 184, 447, 479, 1171, 1213, 1216, 1237, 1478, 1790
LweI GCATC 4 cut(s) 402, 420, 1394, 1942
MaeI CTAG 6 cut(s) 477, 671, 1061, 1463, 1611, 2085
MaeII ACGT 2 cut(s) 179, 276
MaeIII GTNAC 4 cut(s) 479, 758, 1031, 1697
MbiI CCGCTC 1 cut(s) 1113
MflI RGATCY 3 cut(s) 40, 324, 2108
MhlI GDGCHC 2 cut(s) 314, 1368
MluCI AATT 8 cut(s) 599, 701, 1209, 1245, 1575, 1744, 2049, 2096
MlyI GAGTC 1 cut(s) 1485
MmeI TCCRAC 3 cut(s) 823, 1120, 1222
Mph1103I ATGCAT 1 cut(s) 1354
MseI TTAA 4 cut(s) 795, 1293, 1511, 2102
MslI CAYNNNNRTG 4 cut(s) 881, 1019, 1357, 1446
MspA1I CMGCKG 2 cut(s) 175, 423
MspCI CTTAAG 1 cut(s) 1292
MspI CCGG 5 cut(s) 23, 255, 408, 486, 1530
MspR9I CCNGG 3 cut(s) 364, 504, 1382
Mva1269I GAATGC 2 cut(s) 188, 1116
MvaI CCWGG 3 cut(s) 364, 504, 1382
MvnI CGCG 1 cut(s) 63
NdeI CATATG 4 cut(s) 838, 929, 1354, 1393
NheI GCTAGC 1 cut(s) 670
NlaIV GGNNCC 5 cut(s) 42, 664, 1379, 1435, 2110
NmeAIII GCCGAG 1 cut(s) 528
NmuCI GTSAC 3 cut(s) 479, 758, 1031
NsiI ATGCAT 1 cut(s) 1354
NspV TTCGAA 1 cut(s) 574
OliI CACNNNNGTG 1 cut(s) 1446
PagI TCATGA 2 cut(s) 76, 1479
PceI AGGCCT 1 cut(s) 1637
PciSI GCTCTTC 2 cut(s) 636, 1631
PctI GAATGC 2 cut(s) 188, 1116
PfeI GAWTC 1 cut(s) 462
PinAI ACCGGT 2 cut(s) 254, 485
PleI GAGTC 1 cut(s) 1484
PpsI GAGTC 1 cut(s) 1484
PsiI TTATAA 1 cut(s) 1790
Psp6I CCWGG 3 cut(s) 362, 502, 1380
PspFI CCCAGC 1 cut(s) 351
PspGI CCWGG 3 cut(s) 362, 502, 1380
PspN4I GGNNCC 5 cut(s) 42, 664, 1379, 1435, 2110
PspPI GGNCC 3 cut(s) 318, 1377, 1874
PstI CTGCAG 2 cut(s) 661, 1969
PstNI CAGNNNCTG 1 cut(s) 1505
PsuI RGATCY 3 cut(s) 40, 324, 2108
PvuII CAGCTG 1 cut(s) 175
RsaI GTAC 5 cut(s) 14, 619, 1272, 1694, 1962
RsaNI GTAC 5 cut(s) 13, 618, 1271, 1693, 1961
RseI CAYNNNNRTG 4 cut(s) 881, 1019, 1357, 1446
SapI GCTCTTC 2 cut(s) 636, 1631
SaqAI TTAA 4 cut(s) 795, 1293, 1511, 2102
Sau96I GGNCC 3 cut(s) 318, 1377, 1874
SbfI CCTGCAGG 1 cut(s) 661
SchI GAGTC 1 cut(s) 1485
ScrFI CCNGG 3 cut(s) 364, 504, 1382
SdaI CCTGCAGG 1 cut(s) 661
SduI GDGCHC 2 cut(s) 314, 1368
SfaNI GCATC 4 cut(s) 402, 420, 1394, 1942
SfcI CTRYAG 2 cut(s) 657, 1965
SfuI TTCGAA 1 cut(s) 574
SgrAI CRCCGGYG 1 cut(s) 485
SinI GGWCC 2 cut(s) 318, 1377
SmiMI CAYNNNNRTG 4 cut(s) 881, 1019, 1357, 1446
SmlI CTYRAG 2 cut(s) 6, 1292
SmoI CTYRAG 2 cut(s) 6, 1292
Sse8387I CCTGCAGG 1 cut(s) 661
Sse9I AATT 8 cut(s) 599, 701, 1209, 1245, 1575, 1744, 2049, 2096
SseBI AGGCCT 1 cut(s) 1637
SsiI CCGC 7 cut(s) 63, 201, 284, 423, 765, 1113, 1232
SspMI CTAG 6 cut(s) 477, 671, 1061, 1463, 1611, 2085
StuI AGGCCT 1 cut(s) 1637
StyD4I CCNGG 3 cut(s) 362, 502, 1380
StyI CCWWGG 5 cut(s) 1027, 1335, 1542, 1900, 1944
TaaI ACNGT 6 cut(s) 379, 644, 1270, 1445, 1664, 1697
TaiI ACGT 2 cut(s) 182, 279
TaqI TCGA 5 cut(s) 460, 574, 822, 1066, 1728
TaqII GACCGA 1 cut(s) 779
TasI AATT 8 cut(s) 599, 701, 1209, 1245, 1575, 1744, 2049, 2096
TauI GCSGC 3 cut(s) 66, 204, 1116
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 4 cut(s) 795, 1293, 1511, 2102
Tru9I TTAA 4 cut(s) 795, 1293, 1511, 2102
TscAI CASTG 6 cut(s) 619, 1131, 1273, 1375, 1669, 1974
TseFI GTSAC 3 cut(s) 479, 758, 1031
TseI GCWGC 9 cut(s) 172, 435, 467, 1159, 1226, 1229, 1250, 1466, 1778
Tsp45I GTSAC 3 cut(s) 479, 758, 1031
TspDTI ATGAA 7 cut(s) 181, 251, 995, 997, 1499, 1822, 2072
TspGWI ACGGA 1 cut(s) 1050
TspRI CASTG 6 cut(s) 619, 1131, 1273, 1375, 1669, 1974
Vha464I CTTAAG 1 cut(s) 1292
VpaK11BI GGWCC 2 cut(s) 318, 1377
XagI CCTNNNNNAGG 2 cut(s) 361, 1799
XapI RAATTY 3 cut(s) 701, 1209, 2096
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 6 cut(s) 477, 671, 1061, 1463, 1611, 2085
Zsp2I ATGCAT 1 cut(s) 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.