Rw7G009190

Protein of unknown function (DUF3339)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0021872
Physical Location & Seq
Reverse (-)
8664893 .. 8665105
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009190.1

Sequence Viewer

Length: 213 bp
ATGGGGGCGGATTGGGGACCGGTGATCGTAGCTGTGGTGCTGTTCGTTCTGTTGACTCCTGGGCTCATGTTTCAGATTCCGGCCAAGGGGAGGGTGGCGGAGTTTGGGAATATGCAGACAAGTCTTCCCTCCATAGTTGTACACGCCCTCATCTACTTCGGGCTGCTCACCGTCCTCCTTATTGCTATAGGTGTTCATATCTATACTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3339

Protein Analysis

70

Amino Acids

7.45

Weight (kDa)

6.69

Isoelectric Point (pI)

14.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3339 PF11820 3 - 68 4.7e-33 Protein of unknown function (DUF3339)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021872)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189891
rosa_rugosa Rorug06G0500800 Rorug07G0002000
rosa_wichuraiana Rw7G009190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 98
AcoI YGGCCR 1 cut(s) 81
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 2 cut(s) 86, 90
AgeI ACCGGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 58
AluBI AGCT 1 cut(s) 32
AluI AGCT 1 cut(s) 32
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 163
AsiGI ACCGGT 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 34, 160
AvaII GGWCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 66
BbsI GAAGAC 1 cut(s) 116
BbvI GCAGC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 60
BfmI CTRYAG 1 cut(s) 186
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 60
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 59, 84
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 90
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 60
BseDI CCNNGG 2 cut(s) 59, 84
BseLI CCNNNNNNNGG 2 cut(s) 86, 90
BseNI ACTGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 150
BshFI GGCC 1 cut(s) 83
BshTI ACCGGT 1 cut(s) 19
BsiSI CCGG 2 cut(s) 20, 80
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 2 cut(s) 86, 90
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 66
Bsp1407I TGTACA 1 cut(s) 139
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 2 cut(s) 8, 98
BspANI GGCC 1 cut(s) 83
BspLI GGNNCC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 139
BsrI ACTGG 1 cut(s) 211
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 59, 84
BssMI GATC 1 cut(s) 24
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 60
Bst4CI ACNGT 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 139
BstKTI GATC 1 cut(s) 27
BstMBI GATC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 58
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 19
CviAII CATG 1 cut(s) 67
CviJI RGCY 5 cut(s) 32, 64, 83, 163, 210
CviKI_1 RGCY 5 cut(s) 32, 64, 83, 163, 210
CviQI GTAC 1 cut(s) 140
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 81
EciI GGCGGA 2 cut(s) 23, 113
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 70
FaiI YATR 6 cut(s) 68, 113, 134, 188, 198, 204
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 164
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 1 cut(s) 83
HapII CCGG 2 cut(s) 20, 80
Hin1II CATG 1 cut(s) 70
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HinfI GANTC 2 cut(s) 55, 76
HpaII CCGG 2 cut(s) 20, 80
HphI GGTGA 2 cut(s) 34, 160
Hpy166II GTNNAC 2 cut(s) 54, 142
Hpy188I TCNGA 1 cut(s) 75
Hpy8I GTNNAC 2 cut(s) 54, 142
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 115
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 33, 45, 72, 93, 192
Lsp1109I GCAGC 1 cut(s) 150
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 4 cut(s) 84, 139, 158, 185
MspI CCGG 2 cut(s) 20, 80
MspR9I CCNGG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 60
NdeII GATC 1 cut(s) 24
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 76
PinAI ACCGGT 1 cut(s) 19
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 58
PspGI CCWGG 1 cut(s) 58
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 60
SduI GDGCHC 1 cut(s) 66
SetI ASST 2 cut(s) 34, 193
SfcI CTRYAG 1 cut(s) 186
SgeI CNNG 9 cut(s) 32, 71, 72, 79, 92, 97, 132, 155, 172
SinI GGWCC 1 cut(s) 17
SsiI CCGC 2 cut(s) 8, 98
StyD4I CCNGG 1 cut(s) 58
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 172
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 1 cut(s) 76
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.