RchiOBHm_Chr7g0196261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020414
Physical Location & Seq
Forward (+)
14259482 .. 14259791
310 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17553

Sequence Viewer

Length: 246 bp
ATGGTGAGGCCTAACAGGTCTGACCTCGGGTTGATGGGGATTTCAGATCTGACTCTGGCTTATGGGGATTGCAGATCCTACCTTCTTCTTTTTTGGACCGGTGGACTGATTCTGTTATCGAGGAGGCCATGGTGGTATGAAGCGAGACCAGCCATCAAACAACCCTCTTTCTTCTTCTCTGCCTCTAGCAATGTCTTCATTGGCTCTGTGCTCTCAGCCATTGTAGTAGCTCAAGCTTCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.02

Weight (kDa)

9.1

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020414)

Species Orthologous Gene IDs
prunus_persica Prupe.6G029200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196261 RchiOBHm_Chr7g0233281
rosa_multiflora Rmu_sc0018617.1_g000001
rosa_roxburghii Rroxscaffold_1G00002260
rosa_samantha Rh7CG377500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 69
AcuI CTGAAG 1 cut(s) 222
AgeI ACCGGT 1 cut(s) 98
AluBI AGCT 2 cut(s) 230, 236
AluI AGCT 2 cut(s) 230, 236
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 26
AoxI GGCC 2 cut(s) 8, 125
AsiGI ACCGGT 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 213
BccI CCATC 2 cut(s) 28, 161
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 186
BglII AGATCT 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 187
BpuEI CTTGAG 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 25, 128
BsaWI WCCGGW 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 98
Bse3DI GCAATG 1 cut(s) 196
BseDI CCNNGG 2 cut(s) 25, 128
BseMI GCAATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 136
BshFI GGCC 2 cut(s) 10, 127
BshTI ACCGGT 1 cut(s) 98
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 1 cut(s) 99
BsmAI GTCTC 1 cut(s) 139
BsnI GGCC 2 cut(s) 10, 127
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 46, 74
Bsp19I CCATGG 1 cut(s) 128
BspANI GGCC 2 cut(s) 10, 127
BspCNI CTCAG 1 cut(s) 227
BspPI GGATC 1 cut(s) 69
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 196
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 25, 128
BssMI GATC 2 cut(s) 46, 74
BssT1I CCWWGG 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 128
BstKTI GATC 2 cut(s) 49, 77
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 46, 74
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 187
BstX2I RGATCY 2 cut(s) 46, 74
BstYI RGATCY 2 cut(s) 46, 74
BsuRI GGCC 2 cut(s) 10, 127
BtgI CCRYGG 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 96
CspAI ACCGGT 1 cut(s) 98
CviAII CATG 1 cut(s) 129
CviJI RGCY 8 cut(s) 10, 59, 127, 152, 204, 218, 230, 236
CviKI_1 RGCY 8 cut(s) 10, 59, 127, 152, 204, 218, 230, 236
DdeI CTNAG 1 cut(s) 214
DpnI GATC 2 cut(s) 48, 76
DpnII GATC 2 cut(s) 46, 74
Eco130I CCWWGG 1 cut(s) 128
Eco147I AGGCCT 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 1 cut(s) 132
FaiI YATR 3 cut(s) 63, 130, 138
FatI CATG 1 cut(s) 128
FspBI CTAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 10, 127
HapII CCGG 1 cut(s) 99
Hin1II CATG 1 cut(s) 132
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 2 cut(s) 52, 109
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 22, 46, 51, 241
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 1 cut(s) 132
Kzo9I GATC 2 cut(s) 46, 74
LpnPI CCDG 3 cut(s) 41, 112, 162
MaeI CTAG 1 cut(s) 186
MalI GATC 2 cut(s) 48, 76
MboI GATC 2 cut(s) 46, 74
MboII GAAGA 4 cut(s) 77, 163, 166, 187
MflI RGATCY 2 cut(s) 46, 74
MhlI GDGCHC 1 cut(s) 213
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 5 cut(s) 35, 114, 117, 175, 193
MspI CCGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 149
NcoI CCATGG 1 cut(s) 128
NdeII GATC 2 cut(s) 46, 74
NlaIII CATG 1 cut(s) 132
PceI AGGCCT 1 cut(s) 10
PfeI GAWTC 1 cut(s) 109
PinAI ACCGGT 1 cut(s) 98
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 96
PsuI RGATCY 2 cut(s) 46, 74
Sau3AI GATC 2 cut(s) 46, 74
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 213
SetI ASST 5 cut(s) 20, 27, 84, 232, 238
SinI GGWCC 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
SseBI AGGCCT 1 cut(s) 10
SspMI CTAG 1 cut(s) 186
StuI AGGCCT 1 cut(s) 10
StyI CCWWGG 1 cut(s) 128
TaqI TCGA 1 cut(s) 119
TfiI GAWTC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 153, 187
VpaK11BI GGWCC 1 cut(s) 96
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.