Rmu_sc0018617.1_g000001

Core-2/I-Branching enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018617.1
OG0020414
Physical Location & Seq
Forward (+)
1 .. 738
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018617.1_g000001.1.cds

Sequence Viewer

Length: 390 bp
gttcaagaagccgaaaatcgccttcatgttcctccctcgtgcatccccctccactcgttcaacttcacgtaccggacgctggccgcgtcgaagaagagcttcatcgaaatcctcgacaacgagctaggggcatacgacaggtgggcgacgcgtggaccgggcgcgatgcccccgcaggtgagcctggaggagttccggatcgggtcgcagttttgggtcctgaagcggaagcacacttggcttgtggtgagtgaccagcgatcgaggaggccatggtggtatgaagccagatcagcctccaaacagccctctttcttcttgtctgcctctggcaatgtcttcgttggctctgtgctctcagccattgtagtagctcaagcttcagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

129

Amino Acids

14.63

Weight (kDa)

9.57

Isoelectric Point (pI)

52.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020414)

Species Orthologous Gene IDs
prunus_persica Prupe.6G029200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196261 RchiOBHm_Chr7g0233281
rosa_multiflora Rmu_sc0018617.1_g000001
rosa_roxburghii Rroxscaffold_1G00002260
rosa_samantha Rh7CG377500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc36I ACCTGC 1 cut(s) 166
AccII CGCG 3 cut(s) 86, 151, 164
AccIII TCCGGA 1 cut(s) 195
AciI CCGC 3 cut(s) 84, 173, 226
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 81
AcuI CTGAAG 2 cut(s) 242, 366
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 79
AflIII ACRYGT 1 cut(s) 149
AgsI TTSAA 2 cut(s) 5, 61
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 4 cut(s) 99, 124, 374, 380
AluI AGCT 4 cut(s) 99, 124, 374, 380
Alw21I GWGCWC 1 cut(s) 357
AlwI GGATC 1 cut(s) 206
Aor13HI TCCGGA 1 cut(s) 195
AoxI GGCC 2 cut(s) 81, 269
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 155, 217
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 190, 259
AvaII GGWCC 2 cut(s) 155, 217
BauI CACGAG 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 331
Bbv12I GWGCWC 1 cut(s) 357
BcgI CGANNNNNNTGC 2 cut(s) 322, 356
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 159, 185
Bme18I GGWCC 2 cut(s) 155, 217
BmgT120I GGNCC 2 cut(s) 155, 217
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 159, 185
BmsI GCATC 2 cut(s) 51, 156
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 272
BsaWI WCCGGW 2 cut(s) 72, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 340
BseAI TCCGGA 1 cut(s) 195
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 272
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 372
BseRI GAGGAG 2 cut(s) 203, 280
Bsh1236I CGCG 3 cut(s) 86, 151, 164
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 2 cut(s) 83, 271
BsiEI CGRYCG 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 3 cut(s) 73, 158, 196
BslI CCNNNNNNNGG 1 cut(s) 79
BsnI GGCC 2 cut(s) 83, 271
Bsp1286I GDGCHC 1 cut(s) 357
Bsp13I TCCGGA 1 cut(s) 195
Bsp143I GATC 3 cut(s) 198, 260, 290
Bsp19I CCATGG 1 cut(s) 272
BspACI CCGC 3 cut(s) 84, 173, 226
BspANI GGCC 2 cut(s) 83, 271
BspCNI CTCAG 1 cut(s) 371
BspEI TCCGGA 1 cut(s) 195
BspFNI CGCG 3 cut(s) 86, 151, 164
BspLI GGNNCC 1 cut(s) 218
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 1 cut(s) 206
BspQI GCTCTTC 1 cut(s) 89
BsrDI GCAATG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 272
BssMI GATC 3 cut(s) 198, 260, 290
BssSI CACGAG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 358
BstDSI CCRYGG 1 cut(s) 272
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 3 cut(s) 86, 151, 164
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 3 cut(s) 201, 263, 293
BstMBI GATC 3 cut(s) 198, 260, 290
BstMCI CGRYCG 1 cut(s) 263
BstMWI GCNNNNNNNGC 2 cut(s) 238, 293
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 157, 183
BstUI CGCG 3 cut(s) 86, 151, 164
BstV2I GAAGAC 1 cut(s) 331
BsuRI GGCC 2 cut(s) 83, 271
BtgI CCRYGG 1 cut(s) 272
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 155, 217
CseI GACGC 3 cut(s) 75, 85, 157
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 26, 273
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 358
DpnI GATC 3 cut(s) 200, 262, 292
DpnII GATC 3 cut(s) 198, 260, 290
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 272
Eco47I GGWCC 2 cut(s) 155, 217
Eco57I CTGAAG 2 cut(s) 242, 366
EcoO109I RGGNCCY 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 2 cut(s) 29, 276
FaiI YATR 4 cut(s) 27, 133, 274, 282
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FatI CATG 2 cut(s) 25, 272
FauI CCCGC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 2 cut(s) 83, 271
HapII CCGG 3 cut(s) 73, 158, 196
HgaI GACGC 3 cut(s) 75, 85, 157
HhaI GCGC 1 cut(s) 164
Hin1II CATG 2 cut(s) 29, 276
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 378
HpaII CCGG 3 cut(s) 73, 158, 196
HphI GGTGA 2 cut(s) 190, 259
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 385
Hpy188III TCNNGA 3 cut(s) 5, 196, 220
Hpy8I GTNNAC 1 cut(s) 155
Hpy99I CGWCG 2 cut(s) 91, 151
HpyAV CCTTC 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 2 cut(s) 238, 293
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 2 cut(s) 29, 276
HspAI GCGC 1 cut(s) 162
Kpn2I TCCGGA 1 cut(s) 195
Kzo9I GATC 3 cut(s) 198, 260, 290
LguI GCTCTTC 1 cut(s) 89
LweI GCATC 2 cut(s) 51, 156
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 251
MalI GATC 3 cut(s) 200, 262, 292
MboI GATC 3 cut(s) 198, 260, 290
MboII GAAGA 4 cut(s) 103, 106, 307, 331
MhlI GDGCHC 1 cut(s) 357
MluI ACGCGT 1 cut(s) 149
MroI TCCGGA 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 98
MspI CCGG 3 cut(s) 73, 158, 196
MspR9I CCNGG 2 cut(s) 159, 185
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 3 cut(s) 86, 151, 164
MwoI GCNNNNNNNGC 2 cut(s) 238, 293
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 272
NdeII GATC 3 cut(s) 198, 260, 290
NlaIII CATG 2 cut(s) 29, 276
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 89
PcsI WCGNNNNNNNCGW 2 cut(s) 83, 111
PdmI GAANNNNTTC 1 cut(s) 98
PkrI GCNGC 1 cut(s) 85
Ple19I CGATCG 1 cut(s) 263
Ppu21I YACGTR 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 2 cut(s) 155, 217
PspPPI RGGWCCY 1 cut(s) 217
PvuI CGATCG 1 cut(s) 263
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SapI GCTCTTC 1 cut(s) 89
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 198, 260, 290
Sau96I GGNCC 2 cut(s) 155, 217
ScrFI CCNGG 2 cut(s) 159, 185
SduI GDGCHC 1 cut(s) 357
SetI ASST 7 cut(s) 71, 101, 126, 143, 180, 376, 382
SfaNI GCATC 2 cut(s) 51, 156
SinI GGWCC 2 cut(s) 155, 217
SmlI CTYRAG 1 cut(s) 375
SmoI CTYRAG 1 cut(s) 375
SsiI CCGC 3 cut(s) 84, 173, 226
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 157, 183
StyI CCWWGG 1 cut(s) 272
TaiI ACGT 1 cut(s) 71
TaqI TCGA 4 cut(s) 89, 105, 114, 263
TauI GCSGC 1 cut(s) 86
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 14, 91, 297
VpaK11BI GGWCC 2 cut(s) 155, 217
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.