Rh7CG377500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
47507132 .. 47508205
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG377500.1

Sequence Viewer

Length: 285 bp
ATGGTGAGGCCTAACAGGTCTGACCTCGGGTTGATAGGGATTTCAGATCTGACTCGGGCTTATGGGGATTGCAGATCCTACCTTTTTTTGGACCGGTGGTCCGATTCTGTTGTGGTTATACCCGATCTGACGTTTTGTTGCTCCGATTGGAATCTGGGCGATTTGTTTGTTCCAGATCAAGGAGGCCATGGTGGTATGAAGCCAGATCAGCCTCCAAACAACCCTCTTTCTTCTTCTCTGCCTCTGGCAATGTCTTCGTTGGCTCTGTGCTCTCAGCCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.21

Weight (kDa)

4.44

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020414)

Species Orthologous Gene IDs
prunus_persica Prupe.6G029200_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0196261 RchiOBHm_Chr7g0233281
rosa_multiflora Rmu_sc0018617.1_g000001
rosa_roxburghii Rroxscaffold_1G00002260
rosa_samantha Rh7CG377500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 69
AfiI CCNNNNNNNGG 2 cut(s) 88, 179
AgeI ACCGGT 1 cut(s) 93
AhdI GACNNNNNGTC 1 cut(s) 97
Alw21I GWGCWC 1 cut(s) 272
AlwI GGATC 1 cut(s) 69
Ama87I CYCGRG 2 cut(s) 26, 54
AoxI GGCC 2 cut(s) 8, 184
AsiGI ACCGGT 1 cut(s) 93
AspS9I GGNCC 2 cut(s) 91, 99
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 26, 54
AvaII GGWCC 2 cut(s) 91, 99
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BglII AGATCT 1 cut(s) 46
Bme18I GGWCC 2 cut(s) 91, 99
BmeRI GACNNNNNGTC 1 cut(s) 97
BmeT110I CYCGRG 2 cut(s) 26, 54
BmgT120I GGNCC 2 cut(s) 91, 99
BpiI GAAGAC 1 cut(s) 246
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 25, 187
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 179
Bse118I RCCGGY 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 25, 187
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 88, 179
BseMI GCAATG 1 cut(s) 255
BshFI GGCC 2 cut(s) 10, 186
BshTI ACCGGT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 272
BsiHKCI CYCGRG 2 cut(s) 26, 54
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 88, 179
BsnI GGCC 2 cut(s) 10, 186
BsoBI CYCGRG 2 cut(s) 26, 54
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 5 cut(s) 46, 74, 124, 175, 205
Bsp19I CCATGG 1 cut(s) 187
BspANI GGCC 2 cut(s) 10, 186
BspPI GGATC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 25, 187
BssMI GATC 5 cut(s) 46, 74, 124, 175, 205
BssT1I CCWWGG 1 cut(s) 187
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 187
BstKTI GATC 5 cut(s) 49, 77, 127, 178, 208
BstMBI GATC 5 cut(s) 46, 74, 124, 175, 205
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 2 cut(s) 46, 74
BstYI RGATCY 2 cut(s) 46, 74
BsuRI GGCC 2 cut(s) 10, 186
BtgI CCRYGG 1 cut(s) 187
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 91, 99
CspAI ACCGGT 1 cut(s) 93
CviAII CATG 1 cut(s) 188
CviJI RGCY 7 cut(s) 10, 59, 186, 202, 211, 263, 277
CviKI_1 RGCY 7 cut(s) 10, 59, 186, 202, 211, 263, 277
DdeI CTNAG 1 cut(s) 273
DpnI GATC 5 cut(s) 48, 76, 126, 177, 207
DpnII GATC 5 cut(s) 46, 74, 124, 175, 205
DriI GACNNNNNGTC 1 cut(s) 97
Eam1105I GACNNNNNGTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 187
Eco147I AGGCCT 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 91, 99
Eco88I CYCGRG 2 cut(s) 26, 54
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 191
FaiI YATR 4 cut(s) 63, 119, 189, 197
FatI CATG 1 cut(s) 187
HaeIII GGCC 2 cut(s) 10, 186
HapII CCGG 1 cut(s) 94
Hin1II CATG 1 cut(s) 191
HinfI GANTC 3 cut(s) 52, 104, 151
HpaII CCGG 1 cut(s) 94
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 6 cut(s) 22, 46, 51, 103, 129, 145
Hpy188III TCNNGA 1 cut(s) 173
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 72
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 131
Hsp92II CATG 1 cut(s) 191
Kzo9I GATC 5 cut(s) 46, 74, 124, 175, 205
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 5 cut(s) 107, 140, 186, 216, 230
MaeII ACGT 1 cut(s) 131
MalI GATC 5 cut(s) 48, 76, 126, 177, 207
MboI GATC 5 cut(s) 46, 74, 124, 175, 205
MboII GAAGA 3 cut(s) 222, 225, 246
MflI RGATCY 2 cut(s) 46, 74
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 46
MnlI CCTC 5 cut(s) 35, 176, 222, 234, 252
MspI CCGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 208
NcoI CCATGG 1 cut(s) 187
NdeII GATC 5 cut(s) 46, 74, 124, 175, 205
NlaIII CATG 1 cut(s) 191
PceI AGGCCT 1 cut(s) 10
PfeI GAWTC 2 cut(s) 104, 151
PinAI ACCGGT 1 cut(s) 93
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspPI GGNCC 2 cut(s) 91, 99
PsuI RGATCY 2 cut(s) 46, 74
Sau3AI GATC 5 cut(s) 46, 74, 124, 175, 205
Sau96I GGNCC 2 cut(s) 91, 99
SchI GAGTC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 272
SetI ASST 4 cut(s) 20, 27, 84, 134
SinI GGWCC 2 cut(s) 91, 99
SseBI AGGCCT 1 cut(s) 10
StuI AGGCCT 1 cut(s) 10
StyI CCWWGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 134
TfiI GAWTC 2 cut(s) 104, 151
TspDTI ATGAA 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 91, 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.