RchiOBHm_Chr7g0200531

elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019035
Physical Location & Seq
Forward (+)
18322963 .. 18323455
493 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17950

Sequence Viewer

Length: 387 bp
ATGCTTCCTCTGGGCTTTAGGGTTGTGCAGACTGCTCAAATTTTGACTACACTTCTGGGTCACAAGGCTTTTGTTAATTGCACTCTATGGCTTCCAATTAATAAGTTCGCATTCAAAGGTAAGATAGCTACGTATAAGTTTGCATTCAAAGTTCAATGTTCAGAATCATTGTTCAAGCTAATAGCTTTACCTTCATCAACAGCTAAAGGTTACCAACATTATTTGCTCTCTGGAGTTGCAGGGGGAGCCATTATTTTGTGGGAGTATTCTGTTCCTGAAGGAAAGGGTTTAGGTACAAAGTTTAATGGTACAAAGTTTCTATGTCAACCAAGTTTAATGTTCAGAATCAATGTTCAAGCTAACAGCTTTAACTTCATCAACAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000502 GO:0001101 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008023 GO:0008047 GO:0008150 GO:0008152 GO:0008284 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016070 GO:0016504 GO:0018130 GO:0019222 GO:0019438 GO:0022607 GO:0030162 GO:0030234 GO:0031248 GO:0031323 GO:0031325 GO:0031347 GO:0031349 GO:0031537 GO:0031538 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032774 GO:0032991 GO:0033588 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042127 GO:0042221 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043248 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045862 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048584 GO:0048831 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097305 GO:0097659 GO:0098772 GO:1901360 GO:1901362 GO:1901576 GO:1901700 GO:1902493 GO:1902494 GO:1905368 GO:1905369 GO:1990234 GO:2000024 GO:2000026
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

128

Amino Acids

14.16

Weight (kDa)

9.87

Isoelectric Point (pI)

29.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019035)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0200531 RchiOBHm_Chr7g0200991
rosa_laevigata RLG00000003706 RLG00000003710
rosa_rugosa Rorug07G0061200
rosa_samantha Rh7BG190000 Rh7CG197100 Rh7CG197600 Rh7DG192600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 2 cut(s) 295, 310
AgsI TTSAA 5 cut(s) 115, 148, 155, 175, 356
AluBI AGCT 7 cut(s) 128, 178, 185, 203, 359, 366, 384
AluI AGCT 7 cut(s) 128, 178, 185, 203, 359, 366, 384
ApoI RAATTY 1 cut(s) 39
AseI ATTAAT 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 47
BsmI GAATGC 2 cut(s) 110, 143
BspLI GGNNCC 1 cut(s) 247
BstBAI YACGTR 1 cut(s) 132
BstEII GGTNACC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstPI GGTNACC 1 cut(s) 209
BstSNI TACGTA 1 cut(s) 132
Csp6I GTAC 2 cut(s) 294, 309
CviQI GTAC 2 cut(s) 294, 309
Eco105I TACGTA 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 209
FaiI YATR 3 cut(s) 88, 135, 322
GsuI CTGGAG 1 cut(s) 252
HincII GTYRAC 1 cut(s) 326
HindII GTYRAC 1 cut(s) 326
HinfI GANTC 2 cut(s) 164, 345
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 2 cut(s) 163, 344
Hpy188III TCNNGA 2 cut(s) 231, 275
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 2 cut(s) 201, 272
HpyCH4IV ACGT 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 28, 81, 143, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 131
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 4 cut(s) 41, 216, 225, 288
MaeII ACGT 1 cut(s) 131
MaeIII GTNAC 2 cut(s) 59, 209
MluCI AATT 3 cut(s) 39, 76, 96
MnlI CCTC 1 cut(s) 18
MseI TTAA 5 cut(s) 75, 99, 303, 335, 369
Mva1269I GAATGC 2 cut(s) 110, 143
MwoI GCNNNNNNNGC 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 59
PctI GAATGC 2 cut(s) 110, 143
PfeI GAWTC 2 cut(s) 164, 345
Ppu21I YACGTR 1 cut(s) 132
PshBI ATTAAT 1 cut(s) 99
PspEI GGTNACC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 247
RsaI GTAC 2 cut(s) 295, 310
RsaNI GTAC 2 cut(s) 294, 309
SaqAI TTAA 5 cut(s) 75, 99, 303, 335, 369
SgeI CNNG 9 cut(s) 23, 68, 76, 187, 243, 252, 287, 342, 368
SnaBI TACGTA 1 cut(s) 132
Sse9I AATT 3 cut(s) 39, 76, 96
TaiI ACGT 1 cut(s) 134
TasI AATT 3 cut(s) 39, 76, 96
TfiI GAWTC 2 cut(s) 164, 345
Tru1I TTAA 5 cut(s) 75, 99, 303, 335, 369
Tru9I TTAA 5 cut(s) 75, 99, 303, 335, 369
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 183, 364
VspI ATTAAT 1 cut(s) 99
XapI RAATTY 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.