Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Reverse (-)

4469053 .. 4471856

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0061200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAGGGAGCGAAAGCGAGGCGGCGTTTGATTCGGTGAACCTGAATCCGCAGCTGTTCATCAACGAGGTCATCAACACCGTCGACGATTTGGTCGACGATGCGTTCGATTACTTCCACCAGGAAGCATCGACCTGTTTGAAAGTCGAAGGCACTGACAGAGCTCAAGATCTATCCAAGGGCGTTAATCTCATTCACAAAATGGTTCAATCAAATGTTGATAAGCGGCTGGTTATGTGGGAGCGTTACTGTCTTGACCACTGTTTTGAAGTTCCTGAGGGGTTTGTGCTGCCCAAAAGTGGAGAAACACCTGTTGATAGTTCTGTATGTCAAAATGCAATCTGTGATCCAGAAGTGGATGCCCAGTTGGATTCGTTGAGGAACAAACTCACCAAGGTTGGTGAGGAATCTGCTGCACTGAACCGAGAGCTCCAATTATTGGAACAACAGTCTGCTTCTAGTAACCGTTTATCTGCGCTTGTCAATGAGACATTGCAGTTATATGACCGAAACTCTTTTCACGAGATGTTCCAGGAGATGGTTAAAACATCATCACAACTTAGGATGAAAACAGCAAAGCTGAAGACCAGAAAGGCTGAAGAAGCGAAACAGAATAAGATAGATAAGATCTACAACCGATACAAAGATTCATCTGTGATGAATGATAGCAATGGTCTCTCTGGTGCAAAGTTGGAAGATCTTCAAGAATTTTTAGACAATTTGAAAACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04144 ko04728 map04144 map04728

Pfam Domains

Protein Families

Arm Kinesin

Protein Analysis

244

Amino Acids

27.66

Weight (kDa)

4.78

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mis12	PF05859	10 - 212	3.5e-37	Mis12 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	2 cut(s)	439, 538
AccI	GTMKAC	2 cut(s)	84, 96
AciI	CCGC	3 cut(s)	23, 50, 226
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	707
AcuI	CTGAAG	2 cut(s)	602, 618
AfiI	CCNNNNNNNGG	3 cut(s)	299, 439, 538
AgsI	TTSAA	5 cut(s)	142, 209, 269, 704, 724
AjnI	CCWGG	2 cut(s)	120, 531
AluBI	AGCT	4 cut(s)	55, 164, 430, 580
AluI	AGCT	4 cut(s)	55, 164, 430, 580
Alw21I	GWGCWC	2 cut(s)	166, 432
Alw26I	GTCTC	2 cut(s)	482, 680
AlwI	GGATC	1 cut(s)	341
ApeKI	GCWGC	3 cut(s)	52, 289, 413
ApoI	RAATTY	1 cut(s)	707
ArsI	GACNNNNNNTTYG	4 cut(s)	89, 121, 248, 280
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	478
AsuHPI	GGTGA	3 cut(s)	49, 382, 413
AxyI	CCTNAGG	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	166, 432
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	2 cut(s)	166, 432
BbvI	GCAGC	3 cut(s)	64, 276, 400
BccI	CCATC	1 cut(s)	532
BciT130I	CCWGG	2 cut(s)	122, 533
BcoDI	GTCTC	2 cut(s)	482, 680
BfaI	CTAG	1 cut(s)	459
BglII	AGATCT	3 cut(s)	169, 627, 697
BisI	GCNGC	5 cut(s)	24, 53, 227, 290, 414
BlsI	GCNGC	5 cut(s)	25, 54, 228, 291, 415
Bme1390I	CCNGG	2 cut(s)	122, 533
BmrFI	CCNGG	2 cut(s)	122, 533
BmrI	ACTGGG	1 cut(s)	358
BmsI	GCATC	3 cut(s)	91, 137, 349
BmuI	ACTGGG	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	680
BsaJI	CCNNGG	2 cut(s)	177, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	299, 439, 538
Bse1I	ACTGG	1 cut(s)	364
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	2 cut(s)	491, 676
BseBI	CCWGG	2 cut(s)	122, 533
BseDI	CCNNGG	2 cut(s)	177, 393
BseGI	GGATG	2 cut(s)	364, 570
BseLI	CCNNNNNNNGG	3 cut(s)	299, 439, 538
BseMI	GCAATG	2 cut(s)	491, 676
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	64, 276, 400
BsgI	GTGCAG	1 cut(s)	399
BsiHKAI	GWGCWC	2 cut(s)	166, 432
BslI	CCNNNNNNNGG	3 cut(s)	299, 439, 538
BsmAI	GTCTC	2 cut(s)	482, 680
Bso31I	GGTCTC	1 cut(s)	680
Bsp1286I	GDGCHC	2 cut(s)	166, 432
Bsp143I	GATC	4 cut(s)	169, 346, 627, 697
BspACI	CCGC	3 cut(s)	23, 50, 226
BspCNI	CTCAG	1 cut(s)	268
BspPI	GGATC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	680
BsrDI	GCAATG	2 cut(s)	491, 676
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	177, 393
BssMI	GATC	4 cut(s)	169, 346, 627, 697
BssSI	CACGAG	1 cut(s)	521
BssT1I	CCWWGG	2 cut(s)	177, 393
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	122, 533
Bst4CI	ACNGT	5 cut(s)	82, 251, 263, 450, 467
BstDEI	CTNAG	2 cut(s)	276, 560
BstF5I	GGATG	2 cut(s)	364, 570
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	4 cut(s)	172, 349, 630, 700
BstMAI	GTCTC	2 cut(s)	482, 680
BstMBI	GATC	4 cut(s)	169, 346, 627, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	602
BstNI	CCWGG	2 cut(s)	122, 533
BstSCI	CCNGG	2 cut(s)	120, 531
BstV1I	GCAGC	3 cut(s)	64, 276, 400
BstV2I	GAAGAC	1 cut(s)	590
BstX2I	RGATCY	3 cut(s)	169, 627, 697
BstYI	RGATCY	3 cut(s)	169, 627, 697
Bsu36I	CCTNAGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	364, 570
BtsIMutI	CAGTG	3 cut(s)	153, 259, 416
CfoI	GCGC	1 cut(s)	478
CviJI	RGCY	6 cut(s)	55, 164, 229, 430, 580, 596
CviKI_1	RGCY	6 cut(s)	55, 164, 229, 430, 580, 596
DdeI	CTNAG	2 cut(s)	276, 560
DpnI	GATC	4 cut(s)	171, 348, 629, 699
DpnII	GATC	4 cut(s)	169, 346, 627, 697
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Ecl136II	GAGCTC	2 cut(s)	164, 430
Eco130I	CCWWGG	2 cut(s)	177, 393
Eco24I	GRGCYC	2 cut(s)	166, 432
Eco31I	GGTCTC	1 cut(s)	680
Eco53kI	GAGCTC	2 cut(s)	164, 430
Eco57I	CTGAAG	2 cut(s)	602, 618
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	2 cut(s)	164, 430
EcoRII	CCWGG	2 cut(s)	120, 531
EcoT14I	CCWWGG	2 cut(s)	177, 393
EcoT38I	GRGCYC	2 cut(s)	166, 432
ErhI	CCWWGG	2 cut(s)	177, 393
FaiI	YATR	4 cut(s)	236, 328, 502, 504
FblI	GTMKAC	2 cut(s)	84, 96
Fnu4HI	GCNGC	5 cut(s)	24, 53, 227, 290, 414
FokI	GGATG	2 cut(s)	371, 577
FriOI	GRGCYC	2 cut(s)	166, 432
Fsp4HI	GCNGC	5 cut(s)	24, 53, 227, 290, 414
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	5 cut(s)	24, 53, 227, 290, 414
HhaI	GCGC	1 cut(s)	478
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	2 cut(s)	85, 97
HindII	GTYRAC	2 cut(s)	85, 97
HinfI	GANTC	5 cut(s)	32, 46, 371, 407, 647
HphI	GGTGA	3 cut(s)	49, 382, 413
Hpy166II	GTNNAC	3 cut(s)	40, 85, 97
Hpy188III	TCNNGA	6 cut(s)	167, 254, 275, 350, 521, 704
Hpy8I	GTNNAC	3 cut(s)	40, 85, 97
Hpy99I	CGWCG	3 cut(s)	86, 89, 101
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	5 cut(s)	82, 251, 263, 450, 467
HpyCH4V	TGCA	4 cut(s)	338, 416, 496, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	602
HpyF3I	CTNAG	2 cut(s)	276, 560
HspAI	GCGC	1 cut(s)	476
Kzo9I	GATC	4 cut(s)	169, 346, 627, 697
LmnI	GCTCC	3 cut(s)	9, 241, 435
Lsp1109I	GCAGC	3 cut(s)	64, 276, 400
LweI	GCATC	3 cut(s)	91, 137, 349
MaeI	CTAG	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	245, 461
MalI	GATC	4 cut(s)	171, 348, 629, 699
MboI	GATC	4 cut(s)	169, 346, 627, 697
MboII	GAAGA	4 cut(s)	595, 611, 692, 707
MflI	RGATCY	3 cut(s)	169, 627, 697
MhlI	GDGCHC	2 cut(s)	166, 432
MluCI	AATT	3 cut(s)	434, 707, 718
MmeI	TCCRAC	2 cut(s)	348, 672
MnlI	CCTC	5 cut(s)	13, 61, 271, 372, 397
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	2 cut(s)	186, 543
MspA1I	CMGCKG	1 cut(s)	55
MspR9I	CCNGG	2 cut(s)	122, 533
MvaI	CCWGG	2 cut(s)	122, 533
MwoI	GCNNNNNNNGC	1 cut(s)	602
NdeII	GATC	4 cut(s)	169, 346, 627, 697
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 105
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	5 cut(s)	32, 46, 371, 407, 647
PflMI	CCANNNNNTGG	2 cut(s)	439, 538
PfoI	TCCNGGA	1 cut(s)	531
PkrI	GCNGC	5 cut(s)	25, 54, 228, 291, 415
Psp124BI	GAGCTC	2 cut(s)	166, 432
Psp6I	CCWGG	2 cut(s)	120, 531
PspGI	CCWGG	2 cut(s)	120, 531
PsuI	RGATCY	3 cut(s)	169, 627, 697
PvuII	CAGCTG	1 cut(s)	55
SacI	GAGCTC	2 cut(s)	166, 432
SalI	GTCGAC	2 cut(s)	83, 95
SaqAI	TTAA	2 cut(s)	186, 543
SatI	GCNGC	5 cut(s)	24, 53, 227, 290, 414
Sau3AI	GATC	4 cut(s)	169, 346, 627, 697
ScrFI	CCNGG	2 cut(s)	122, 533
SduI	GDGCHC	2 cut(s)	166, 432
SetI	ASST	9 cut(s)	45, 57, 72, 137, 166, 313, 399, 432, 582
SfaNI	GCATC	3 cut(s)	91, 137, 349
SgrDI	CGTCGACG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	434, 707, 718
SsiI	CCGC	3 cut(s)	23, 50, 226
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	2 cut(s)	166, 432
StyD4I	CCNGG	2 cut(s)	120, 531
StyI	CCWWGG	2 cut(s)	177, 393
TaaI	ACNGT	5 cut(s)	82, 251, 263, 450, 467
TaqI	TCGA	5 cut(s)	84, 96, 108, 131, 147
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	3 cut(s)	434, 707, 718
TauI	GCSGC	2 cut(s)	26, 229
TfiI	GAWTC	5 cut(s)	32, 46, 371, 407, 647
Tru1I	TTAA	2 cut(s)	186, 543
Tru9I	TTAA	2 cut(s)	186, 543
TscAI	CASTG	3 cut(s)	160, 266, 423
TseI	GCWGC	3 cut(s)	52, 289, 413
TspDTI	ATGAA	4 cut(s)	49, 581, 639, 674
TspRI	CASTG	3 cut(s)	160, 266, 423
Van91I	CCANNNNNTGG	2 cut(s)	439, 538
XapI	RAATTY	1 cut(s)	707
XmiI	GTMKAC	2 cut(s)	84, 96
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.