Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

15274715 .. 15276513

Gene Structure 1799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG189300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGATGATGTCAGACATGCTTACCATGAACTTTCCATAATATACCACCCGGACAAATACAAGTCCAGTTGCGGCATGACGGAAGACGAAGCCGCCGCCAAATTCCTAGAGATCAAAGACGCCTACAACATTCTCAAAGAACCCGATGAGCGAGCCTTCTACGACTCCTACCGCCAGACCTACGCTGTCCCAGAGGCTTTCAACCCCGACCTCGAAGCCGCCTTCGACAACATCAACTTCAATGGCTACTCCGATTCCAACCGCGGTTTCTACAAGGTCTATTCTGACGTTTTCAACAAGATTTACGCCAGCGAGCGTGCTTTTCAGGAAAGGAATGACCTACCGTGGGATTCGGTTCACAAGCCTCCGGACATGGGGAATCTCGAGAGCCCGTATCCCGAGGTTGTTAAGTTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGACCCGTATGATGAGTATGATCTCAGTAGGGTCATCCGCAAGGGGTATAAGCGGTGGTCGAAAAAGAATATGAAGGCGAGGAAGAAAGCTAAGAAGGAGTATAACAACAAGGTGCGGGATTTGGCACATAATGCGAAGAGGCTGGACAAGAGGGTCTTGCAGATGATGGCGAAGAGGGAGGAGGAAAGGAAGAGGGAGATGGAGAAGGAAAGGGAGAGGAGGAAGCGGTTGAAGAAGGAGAAGCTGGCGAAGGCTGCTATGGAGTATGAGGAGCCGGAGTGGACCAAAGTGGTTGAGAGGAAGAGAAAATATGGTGATCCTGGGGACGAGAAGGAGAAGGAGAGAGAGGAATGGGAGTGTGTGGTTTGTAGAAAGGGATTTAGGAGTGAAAAGCAGTGTCGGAATCACGAGCAGTCGAAGAAGCACCTCCGCATGGTTATGGAGTTGATGAAGTTGAAACATTATGTTATGGTTGCGGAGTTGATTGAGGTAGAGAGAAATTATGAAGAGCTTAATGAAGAAGAGGATTTAATGGAAGAAAAAAGGAATGAGGTGGTGGATGATGGGGTTGGAGGGAGTGATAGTAACGAAAATGAATTTTCTGATTGTGATAACGAAAATCAGAAGGAAAAAGTCAGTGAAGTAGTTGAAGTCGATGAGTTGGAGGTGGAAGAGGAGGAGGATGAGATGAATGTTCTTGAAGCAATGGTGGCGAGGCGAAAGGCTATGGAAAAGGTTTGTGAAGATGTTCTTGAACCAATGTTTGAGGTCATGGCGACCAATATGCATGTGGAGAATGATGTTAATGAGGTGGCTATAGAGCATCATGATAAGCTAAAGAGCACGAATAATAAAATTGGAGGAGAGAAGAAACCGAGGAGGAGGAAGAGTGTGGAGAGTACTAGAATTAACGAACACGATAGTTCTCCTAATTCAAATATGAAGGAAATCAAATCTGATTCTAGTGCAGAAGAAAGGAAAGCAAGGAAGAATGTCAAAGAAAGTACTAGACCTAATGGTGAGAGCGATCGAGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

500

Amino Acids

59.46

Weight (kDa)

5.43

Isoelectric Point (pI)

55.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	2 - 55	3e-10	DnaJ domain
ZUO1-like_ZHD	PF21884	90 - 206	1.4e-16	Zuotin-like, zuotin homology domain
zf-C2H2_jaz	PF12171	272 - 296	6.4e-07	Zinc-finger double-stranded RNA-binding
zf-met	PF12874	272 - 296	1.7e-06	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	614
AccII	CGCG	1 cut(s)	264
AccIII	TCCGGA	1 cut(s)	367
AclWI	GGATC	1 cut(s)	773
AcsI	RAATTY	2 cut(s)	101, 1058
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	2 cut(s)	1363, 1468
AfiI	CCNNNNNNNGG	3 cut(s)	346, 374, 895
AgsI	TTSAA	9 cut(s)	202, 241, 295, 694, 919, 1112, 1163, 1217, 1398
AjnI	CCWGG	1 cut(s)	781
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	4 cut(s)	551, 706, 973, 1297
AluI	AGCT	4 cut(s)	551, 706, 973, 1297
Alw21I	GWGCWC	1 cut(s)	1307
AlwI	GGATC	1 cut(s)	773
Ama87I	CYCGRG	2 cut(s)	383, 398
Aor13HI	TCCGGA	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	2 cut(s)	101, 1058
Asp700I	GAANNNNTTC	1 cut(s)	1209
AspS9I	GGNCC	2 cut(s)	463, 744
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	788, 1493
AvaI	CYCGRG	2 cut(s)	383, 398
AvaII	GGWCC	2 cut(s)	463, 744
BanII	GRGCYC	1 cut(s)	392
BauI	CACGAG	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	1307
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	3 cut(s)	622, 655, 1019
BcgI	CGANNNNNNTGC	2 cut(s)	1228, 1262
BciT130I	CCWGG	1 cut(s)	783
BciVI	GTATCC	1 cut(s)	405
BcnI	CCSGG	1 cut(s)	50
BfaI	CTAG	4 cut(s)	107, 1365, 1425, 1470
BfmI	CTRYAG	1 cut(s)	1278
BfuI	GTATCC	1 cut(s)	405
BisI	GCNGC	5 cut(s)	73, 93, 96, 219, 717
BlsI	GCNGC	5 cut(s)	74, 94, 97, 220, 718
BmcAI	AGTACT	2 cut(s)	1363, 1468
Bme1390I	CCNGG	2 cut(s)	50, 783
Bme18I	GGWCC	2 cut(s)	463, 744
BmeT110I	CYCGRG	2 cut(s)	383, 398
BmgT120I	GGNCC	2 cut(s)	463, 744
BmiI	GGNNCC	2 cut(s)	465, 735
BmrFI	CCNGG	2 cut(s)	50, 783
BmsI	GCATC	1 cut(s)	1294
BpiI	GAAGAC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	5 cut(s)	262, 344, 399, 782, 1337
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	8 cut(s)	452, 482, 725, 755, 1030, 1060, 1336, 1366
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 374, 895
Bse1I	ACTGG	2 cut(s)	66, 428
Bse3DI	GCAATG	1 cut(s)	1173
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	783
BseDI	CCNNGG	5 cut(s)	262, 344, 399, 782, 1337
BseGI	GGATG	4 cut(s)	10, 495, 1027, 1150
BseLI	CCNNNNNNNGG	3 cut(s)	346, 374, 895
BseMI	GCAATG	1 cut(s)	1173
BseMII	CTCAG	1 cut(s)	499
BseNI	ACTGG	2 cut(s)	66, 428
BseRI	GAGGAG	8 cut(s)	656, 694, 746, 1151, 1154, 1338, 1354, 1357
BseXI	GCAGC	1 cut(s)	703
BseYI	CCCAGC	1 cut(s)	456
BsgI	GTGCAG	1 cut(s)	1449
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	1492
BsiEI	CGRYCG	1 cut(s)	1492
BsiHKAI	GWGCWC	1 cut(s)	1307
BsiHKCI	CYCGRG	2 cut(s)	383, 398
BsiSI	CCGG	3 cut(s)	50, 368, 737
BslFI	GGGAC	2 cut(s)	173, 800
BslI	CCNNNNNNNGG	3 cut(s)	346, 374, 895
BsmFI	GGGAC	2 cut(s)	173, 800
BsoBI	CYCGRG	2 cut(s)	383, 398
Bsp1286I	GDGCHC	2 cut(s)	392, 1307
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	111, 481, 778, 1489
BspCNI	CTCAG	1 cut(s)	498
BspEI	TCCGGA	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	264
BspHI	TCATGA	1 cut(s)	1288
BspLI	GGNNCC	2 cut(s)	465, 735
BspPI	GGATC	1 cut(s)	773
BspQI	GCTCTTC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	1173
BsrI	ACTGG	2 cut(s)	66, 428
BssECI	CCNNGG	5 cut(s)	262, 344, 399, 782, 1337
BssMI	GATC	4 cut(s)	111, 481, 778, 1489
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	869
Bst2BI	CACGAG	1 cut(s)	869
Bst2UI	CCWGG	1 cut(s)	783
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	8 cut(s)	593, 629, 647, 758, 963, 978, 1128, 1343
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	5 cut(s)	153, 310, 314, 318, 708
BstDEI	CTNAG	2 cut(s)	485, 552
BstDSI	CCRYGG	2 cut(s)	262, 344
BstF5I	GGATG	4 cut(s)	10, 495, 1027, 1150
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	4 cut(s)	114, 484, 781, 1492
BstMBI	GATC	4 cut(s)	111, 481, 778, 1489
BstMCI	CGRYCG	1 cut(s)	1492
BstMWI	GCNNNNNNNGC	3 cut(s)	593, 716, 1172
BstNI	CCWGG	1 cut(s)	783
BstNSI	RCATGY	2 cut(s)	20, 1253
BstSCI	CCNGG	2 cut(s)	48, 781
BstSFI	CTRYAG	1 cut(s)	1278
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	703
BstV2I	GAAGAC	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	405
BtgI	CCRYGG	2 cut(s)	262, 344
BtsCI	GGATG	4 cut(s)	10, 495, 1027, 1150
BtsI	GCAGTG	1 cut(s)	863
BtsIMutI	CAGTG	2 cut(s)	863, 1105
Cac8I	GCNNGC	5 cut(s)	153, 310, 314, 318, 708
CciI	TCATGA	1 cut(s)	1288
Cfr13I	GGNCC	2 cut(s)	463, 744
Cfr42I	CCGCGG	1 cut(s)	265
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	1362, 1467
CviAII	CATG	8 cut(s)	17, 26, 76, 373, 895, 1234, 1250, 1289
CviQI	GTAC	2 cut(s)	1362, 1467
DdeI	CTNAG	2 cut(s)	485, 552
DpnI	GATC	4 cut(s)	113, 483, 780, 1491
DpnII	GATC	4 cut(s)	111, 481, 778, 1489
DrdI	GACNNNNNNGTC	1 cut(s)	614
DseDI	GACNNNNNNGTC	1 cut(s)	614
Eam1104I	CTCTTC	8 cut(s)	593, 629, 647, 758, 963, 978, 1128, 1343
EarI	CTCTTC	8 cut(s)	593, 629, 647, 758, 963, 978, 1128, 1343
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	463, 744
Eco88I	CYCGRG	2 cut(s)	383, 398
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	781
EcoT22I	ATGCAT	1 cut(s)	1251
EcoT38I	GRGCYC	1 cut(s)	392
FaeI	CATG	8 cut(s)	20, 29, 79, 376, 898, 1237, 1253, 1292
FalI	AAGNNNNNCTT	4 cut(s)	602, 634, 1197, 1229
FaqI	GGGAC	2 cut(s)	173, 800
FatI	CATG	8 cut(s)	16, 25, 75, 372, 894, 1233, 1249, 1288
FauI	CCCGC	1 cut(s)	570
Fnu4HI	GCNGC	5 cut(s)	73, 93, 96, 219, 717
FokI	GGATG	4 cut(s)	17, 482, 1034, 1157
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	5 cut(s)	73, 93, 96, 219, 717
FspBI	CTAG	4 cut(s)	107, 1365, 1425, 1470
GluI	GCNGC	5 cut(s)	73, 93, 96, 219, 717
GsaI	CCCAGC	1 cut(s)	460
HapII	CCGG	3 cut(s)	50, 368, 737
HgaI	GACGC	1 cut(s)	128
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	8 cut(s)	20, 29, 79, 376, 898, 1237, 1253, 1292
HinfI	GANTC	6 cut(s)	164, 254, 350, 379, 865, 1421
HpaII	CCGG	3 cut(s)	50, 368, 737
HphI	GGTGA	2 cut(s)	788, 1493
Hpy166II	GTNNAC	2 cut(s)	358, 744
Hpy188I	TCNGA	7 cut(s)	14, 253, 286, 864, 1066, 1086, 1420
Hpy188III	TCNNGA	9 cut(s)	326, 368, 383, 385, 398, 869, 1160, 1214, 1289
Hpy8I	GTNNAC	2 cut(s)	358, 744
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	622, 1249, 1430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	593, 716, 1172
HpyF3I	CTNAG	2 cut(s)	485, 552
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	8 cut(s)	20, 29, 79, 376, 898, 1237, 1253, 1292
Kpn2I	TCCGGA	1 cut(s)	367
KspI	CCGCGG	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	111, 481, 778, 1489
LguI	GCTCTTC	1 cut(s)	963
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	1 cut(s)	1294
MaeI	CTAG	4 cut(s)	107, 1365, 1425, 1470
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	1046
MalI	GATC	4 cut(s)	113, 483, 780, 1491
MboI	GATC	4 cut(s)	111, 481, 778, 1489
MhlI	GDGCHC	2 cut(s)	392, 1307
MluCI	AATT	6 cut(s)	101, 961, 1058, 1317, 1368, 1393
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	4 cut(s)	282, 842, 1012, 1104
Mph1103I	ATGCAT	1 cut(s)	1251
MroI	TCCGGA	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	1209
MseI	TTAA	5 cut(s)	408, 975, 992, 1266, 1371
MslI	CAYNNNNRTG	1 cut(s)	899
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	3 cut(s)	50, 368, 737
MspR9I	CCNGG	2 cut(s)	50, 783
MvaI	CCWGG	1 cut(s)	783
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	593, 716, 1172
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	4 cut(s)	111, 481, 778, 1489
NlaIII	CATG	8 cut(s)	20, 29, 79, 376, 898, 1237, 1253, 1292
NlaIV	GGNNCC	2 cut(s)	465, 735
NsiI	ATGCAT	1 cut(s)	1251
NspI	RCATGY	2 cut(s)	20, 1253
PaeR7I	CTCGAG	1 cut(s)	383
PagI	TCATGA	1 cut(s)	1288
PciSI	GCTCTTC	1 cut(s)	963
PdmI	GAANNNNTTC	1 cut(s)	1209
PfeI	GAWTC	5 cut(s)	254, 350, 379, 865, 1421
PkrI	GCNGC	5 cut(s)	74, 94, 97, 220, 718
Ple19I	CGATCG	1 cut(s)	1492
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	463
Psp5II	RGGWCCY	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	781
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	781
PspN4I	GGNNCC	2 cut(s)	465, 735
PspPI	GGNCC	2 cut(s)	463, 744
PspPPI	RGGWCCY	1 cut(s)	463
PvuI	CGATCG	1 cut(s)	1492
RsaI	GTAC	2 cut(s)	1363, 1468
RsaNI	GTAC	2 cut(s)	1362, 1467
RseI	CAYNNNNRTG	1 cut(s)	899
SacII	CCGCGG	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	963
SaqAI	TTAA	5 cut(s)	408, 975, 992, 1266, 1371
SatI	GCNGC	5 cut(s)	73, 93, 96, 219, 717
Sau3AI	GATC	4 cut(s)	111, 481, 778, 1489
Sau96I	GGNCC	2 cut(s)	463, 744
ScaI	AGTACT	2 cut(s)	1363, 1468
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	50, 783
SduI	GDGCHC	2 cut(s)	392, 1307
SfaNI	GCATC	1 cut(s)	1294
SfcI	CTRYAG	1 cut(s)	1278
Sfr274I	CTCGAG	1 cut(s)	383
Sfr303I	CCGCGG	1 cut(s)	265
SgrBI	CCGCGG	1 cut(s)	265
SinI	GGWCC	2 cut(s)	463, 744
SlaI	CTCGAG	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	6 cut(s)	101, 961, 1058, 1317, 1368, 1393
SspMI	CTAG	4 cut(s)	107, 1365, 1425, 1470
StyD4I	CCNGG	2 cut(s)	48, 781
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	7 cut(s)	213, 225, 384, 521, 878, 1116, 1492
TasI	AATT	6 cut(s)	101, 961, 1058, 1317, 1368, 1393
TatI	WGTACW	2 cut(s)	1361, 1466
TauI	GCSGC	4 cut(s)	75, 95, 98, 221
TfiI	GAWTC	5 cut(s)	254, 350, 379, 865, 1421
Tru1I	TTAA	5 cut(s)	408, 975, 992, 1266, 1371
Tru9I	TTAA	5 cut(s)	408, 975, 992, 1266, 1371
TscAI	CASTG	2 cut(s)	863, 1105
TseI	GCWGC	1 cut(s)	716
TspDTI	ATGAA	8 cut(s)	42, 548, 926, 981, 993, 1071, 1166, 1418
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	863, 1105
VpaK11BI	GGWCC	2 cut(s)	463, 744
XapI	RAATTY	2 cut(s)	101, 1058
XceI	RCATGY	2 cut(s)	20, 1253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1249
XhoI	CTCGAG	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	1209
XspI	CTAG	4 cut(s)	107, 1365, 1425, 1470
ZrmI	AGTACT	2 cut(s)	1363, 1468
Zsp2I	ATGCAT	1 cut(s)	1251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.