Rmu_sc0000617.1_g000002

dnaJ homolog subfamily C member

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000617.1
Physical Location & Seq
Reverse (-)
7584 .. 9230
1647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000617.1_g000002.1.cds

Sequence Viewer

Length: 1647 bp
atggtgaagagcacagagcgcgtctgccactacgagaccttaggcctggaaccaaattgctcagaaaaagaaatcaaggctgctcacaggaaactaatcctcacgtaccattgggacaaatgtagatcatcccaatgtggcttgtcccaagaagaagccactgccaaatttttagaggtccaacaagcctacgaaatccttatggatcccataaagcgagaaacctataacgcctaccgccagacctacgctgtccctgaagttttcaaccccgacctcgacgtaccctttgacagcatcgtcttcaacggctactccagctccagccgcagcttctacaatgcctactctgacatttttcaaaggatttacgccaacgagcgcgcttttcaaaagaagaacgacctgccgtggaattcggttcacaagcctccagacatgggcaatctcgacaccccttatcctgaggttgttcaattttacaactactggctcaactttagttccataatggatttctgctgggaggatccacatgatgagtatgatctaagtcaggtgacccggagaggggtgaagttttggtcccgcataaacatgaaggcgaggaagaaagcaaagaaggaatacaacaataaggtgaggagtttggcacaaactgcgaaaaggctcgacaggagggtcatgcagatggtagcgaagagggaggtggagagaaagagggagatagaggaggagagggagaggaggaagcggttgaagaaagagaagttggtgaaggctatagagtatgaggagcaggagtggacgaaaccagttgagaggaagagaaaatatagtaacaaggaggaggaggaggaggaaaaagagagagacgaatgggagtgtgtagtttgcaggaaggtgtacaggagtgagcggcagtgcaggaatcatgagcaatcaaaaaagcatctccgcatggttgcaaagttaatggagttgttggaggttttggaggaagcaaaaaggaatgaggtggttggagggagtgatggcgaagaggagtttgttgatggtgttaatgataatcagagggaaaagcttagtgaaacaggtgaagttgatgatgaggaagtggaggaggatgagatgggtgttcttgaagcaatggtggcgaggcgaaagacaatggaagaggttggtgaagatattcttgaatcaatattggttgaacccatggcgagtagtagtcaagaggtgaagaatgctgacgaggtggctatggagcatgacaagctaaagaacgccaataagaatgaaggagaaaggaaaccgaggagaagaagggccaagagtactagaactgacgaacgtgatggttcgaataatatgaaggaatccaaacctgattgtagtgcagaaaaaggatatgatgaggatcagatcaataaaaggaagggtggagagaggaaagagaggagcggtaagaagagtaacggtaaaggagatattgagcagaagaaaatgaggagcggaggaaggagtgaagagaagaagggtaagaagagaaatggtggagaaagaagaattaatgaacatggtacatcctatttttctgctgtgaatgagagttatctgaacatgttacatctgatattcatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

548

Amino Acids

64.65

Weight (kDa)

6.85

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 299, 680
Acc36I ACCTGC 1 cut(s) 414
AccBSI CCGCTC 3 cut(s) 919, 1464, 1515
AccII CGCG 2 cut(s) 21, 384
AciI CCGC 8 cut(s) 238, 328, 589, 754, 919, 958, 1464, 1515
AclWI GGATC 5 cut(s) 200, 213, 524, 537, 1428
AcsI RAATTY 2 cut(s) 167, 415
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 5 cut(s) 107, 285, 908, 1339, 1585
AfiI CCNNNNNNNGG 3 cut(s) 440, 570, 571
AflIII ACRYGT 1 cut(s) 1623
AgsI TTSAA 9 cut(s) 268, 307, 362, 392, 476, 760, 1145, 1199, 1214
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 4 cut(s) 321, 333, 1084, 1279
AluI AGCT 4 cut(s) 321, 333, 1084, 1279
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 29, 867
AlwI GGATC 5 cut(s) 200, 213, 524, 537, 1428
AoxI GGCC 2 cut(s) 43, 1329
ApeKI GCWGC 2 cut(s) 80, 330
ApoI RAATTY 2 cut(s) 167, 415
ArsI GACNNNNNNTTYG 2 cut(s) 272, 304
AseI ATTAAT 1 cut(s) 1572
Asp700I GAANNNNTTC 1 cut(s) 1191
AspLEI GCGC 3 cut(s) 21, 384, 386
AspS9I GGNCC 3 cut(s) 178, 585, 1329
AsuC2I CCSGG 1 cut(s) 565
AsuHPI GGTGA 8 cut(s) 16, 571, 586, 652, 787, 1109, 1196, 1252
AsuII TTCGAA 1 cut(s) 1364
AvaII GGWCC 2 cut(s) 178, 585
AxyI CCTNAGG 2 cut(s) 40, 465
BamHI GGATCC 2 cut(s) 205, 529
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 67, 342
BccI CCATC 5 cut(s) 685, 1028, 1049, 1126, 1352
BceAI ACGGC 2 cut(s) 325, 394
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 29, 867
BfaI CTAG 1 cut(s) 1341
BfmI CTRYAG 1 cut(s) 783
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 4 cut(s) 81, 328, 331, 920
BlsI GCNGC 4 cut(s) 82, 329, 332, 921
BmcAI AGTACT 1 cut(s) 1339
Bme1390I CCNGG 2 cut(s) 47, 565
Bme18I GGWCC 2 cut(s) 178, 585
BmgT120I GGNCC 3 cut(s) 178, 585, 1329
BmiI GGNNCC 4 cut(s) 51, 207, 531, 587
BmrFI CCNGG 2 cut(s) 47, 565
BmsI GCATC 2 cut(s) 306, 961
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 3 cut(s) 301, 307, 417
Bpu14I TTCGAA 1 cut(s) 1364
BpuMI CCSGG 1 cut(s) 565
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 1419
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 410, 1218, 1316
BsaXI ACNNNNNCTCC 6 cut(s) 299, 305, 329, 335, 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 570, 571
Bse1I ACTGG 2 cut(s) 494, 815
Bse21I CCTNAGG 2 cut(s) 40, 465
Bse3DI GCAATG 1 cut(s) 1155
Bse8I GATNNNNATC 1 cut(s) 1419
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 410, 1218, 1316
BseGI GGATG 3 cut(s) 128, 1132, 1586
BseJI GATNNNNATC 1 cut(s) 1419
BseLI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BseMI GCAATG 1 cut(s) 1155
BseMII CTCAG 2 cut(s) 75, 456
BseNI ACTGG 2 cut(s) 494, 815
BsePI GCGCGC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 67, 342
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 2 cut(s) 946, 1419
Bsh1236I CGCG 2 cut(s) 21, 384
BshFI GGCC 2 cut(s) 45, 1331
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 565
BslFI GGGAC 4 cut(s) 128, 130, 239, 571
BslI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BsmAI GTCTC 2 cut(s) 29, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 4 cut(s) 128, 130, 239, 571
BsmI GAATGC 1 cut(s) 1252
BsnI GGCC 2 cut(s) 45, 1331
Bso31I GGTCTC 1 cut(s) 29
Bsp119I TTCGAA 1 cut(s) 1364
Bsp1286I GDGCHC 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 906
Bsp143I GATC 6 cut(s) 125, 205, 529, 547, 1420, 1425
Bsp19I CCATGG 1 cut(s) 1218
BspACI CCGC 8 cut(s) 238, 328, 589, 754, 919, 958, 1464, 1515
BspANI GGCC 2 cut(s) 45, 1331
BspCNI CTCAG 2 cut(s) 74, 457
BspFNI CGCG 2 cut(s) 21, 384
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 4 cut(s) 51, 207, 531, 587
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 5 cut(s) 200, 213, 524, 537, 1428
BspQI GCTCTTC 1 cut(s) 2
BspT104I TTCGAA 1 cut(s) 1364
BspTNI GGTCTC 1 cut(s) 29
BsrBI CCGCTC 3 cut(s) 919, 1464, 1515
BsrDI GCAATG 1 cut(s) 1155
BsrGI TGTACA 1 cut(s) 906
BsrI ACTGG 2 cut(s) 494, 815
BssECI CCNNGG 3 cut(s) 410, 1218, 1316
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 6 cut(s) 125, 205, 529, 547, 1420, 1425
BssT1I CCWWGG 1 cut(s) 1218
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 1481
Bst6I CTCTTC 8 cut(s) 2, 695, 821, 1035, 1170, 1466, 1524, 1541
BstAPI GCANNNNNTGC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 906
BstBAI YACGTR 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 1364
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 40, 61, 465, 551, 1085
BstDSI CCRYGG 2 cut(s) 410, 1218
BstEII GGTNACC 1 cut(s) 559
BstF5I GGATG 3 cut(s) 128, 1132, 1586
BstFNI CGCG 2 cut(s) 21, 384
BstHHI GCGC 3 cut(s) 21, 384, 386
BstKTI GATC 6 cut(s) 128, 208, 532, 550, 1423, 1428
BstMAI GTCTC 2 cut(s) 29, 867
BstMBI GATC 6 cut(s) 125, 205, 529, 547, 1420, 1425
BstMWI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1154, 1276
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 1 cut(s) 1627
BstPI GGTNACC 1 cut(s) 559
BstSCI CCNGG 2 cut(s) 45, 563
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 2 cut(s) 21, 384
BstV1I GCAGC 2 cut(s) 67, 342
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 2 cut(s) 205, 529
BstYI RGATCY 2 cut(s) 205, 529
Bsu36I CCTNAGG 2 cut(s) 40, 465
BsuRI GGCC 2 cut(s) 45, 1331
BtgI CCRYGG 2 cut(s) 410, 1218
BtsCI GGATG 3 cut(s) 128, 1132, 1586
BtsI GCAGTG 2 cut(s) 159, 929
BtsIMutI CAGTG 2 cut(s) 159, 929
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 934
CfoI GCGC 3 cut(s) 21, 384, 386
Cfr13I GGNCC 3 cut(s) 178, 585, 1329
CseI GACGC 1 cut(s) 10
Csp6I GTAC 5 cut(s) 106, 284, 907, 1338, 1584
CviQI GTAC 5 cut(s) 106, 284, 907, 1338, 1584
DdeI CTNAG 5 cut(s) 40, 61, 465, 551, 1085
DpnI GATC 6 cut(s) 127, 207, 531, 549, 1422, 1427
DpnII GATC 6 cut(s) 125, 205, 529, 547, 1420, 1425
DrdI GACNNNNNNGTC 2 cut(s) 299, 680
DseDI GACNNNNNNGTC 2 cut(s) 299, 680
Eam1104I CTCTTC 8 cut(s) 2, 695, 821, 1035, 1170, 1466, 1524, 1541
EarI CTCTTC 8 cut(s) 2, 695, 821, 1035, 1170, 1466, 1524, 1541
Eco130I CCWWGG 1 cut(s) 1218
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 178, 585
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 2 cut(s) 40, 465
Eco91I GGTNACC 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 559
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 1218
ErhI CCWWGG 1 cut(s) 1218
Esp3I CGTCTC 1 cut(s) 867
FalI AAGNNNNNCTT 2 cut(s) 1179, 1211
FaqI GGGAC 4 cut(s) 128, 130, 239, 571
FauI CCCGC 1 cut(s) 596
Fnu4HI GCNGC 4 cut(s) 81, 328, 331, 920
FokI GGATG 3 cut(s) 115, 1139, 1573
Fsp4HI GCNGC 4 cut(s) 81, 328, 331, 920
FspBI CTAG 1 cut(s) 1341
GlaI GCGC 3 cut(s) 20, 383, 385
GluI GCNGC 4 cut(s) 81, 328, 331, 920
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 3 cut(s) 301, 307, 417
HaeIII GGCC 2 cut(s) 45, 1331
HapII CCGG 1 cut(s) 565
HgaI GACGC 1 cut(s) 10
HhaI GCGC 3 cut(s) 21, 384, 386
Hin6I GCGC 3 cut(s) 19, 382, 384
HinP1I GCGC 3 cut(s) 19, 382, 384
HindIII AAGCTT 1 cut(s) 1082
HinfI GANTC 3 cut(s) 931, 1199, 1379
HpaII CCGG 1 cut(s) 565
HphI GGTGA 8 cut(s) 16, 571, 586, 652, 787, 1109, 1196, 1252
Hpy166II GTNNAC 3 cut(s) 424, 807, 907
Hpy188I TCNGA 6 cut(s) 64, 352, 1074, 1425, 1620, 1635
Hpy188III TCNNGA 7 cut(s) 434, 449, 464, 935, 1142, 1196, 1235
Hpy8I GTNNAC 3 cut(s) 424, 807, 907
Hpy99I CGWCG 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 1481
HpyCH4IV ACGT 3 cut(s) 104, 282, 1354
HpyCH4V TGCA 5 cut(s) 688, 897, 927, 968, 1400
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1154, 1276
HpyF3I CTNAG 5 cut(s) 40, 61, 465, 551, 1085
HpySE526I ACGT 3 cut(s) 104, 282, 1354
HspAI GCGC 3 cut(s) 19, 382, 384
Kzo9I GATC 6 cut(s) 125, 205, 529, 547, 1420, 1425
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 5 cut(s) 326, 796, 1267, 1461, 1512
Lsp1109I GCAGC 2 cut(s) 67, 342
LweI GCATC 2 cut(s) 306, 961
MaeI CTAG 1 cut(s) 1341
MaeII ACGT 3 cut(s) 104, 282, 1354
MaeIII GTNAC 4 cut(s) 559, 839, 1475, 1626
MalI GATC 6 cut(s) 127, 207, 531, 549, 1422, 1427
MbiI CCGCTC 3 cut(s) 919, 1464, 1515
MboI GATC 6 cut(s) 125, 205, 529, 547, 1420, 1425
MflI RGATCY 2 cut(s) 205, 529
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 5 cut(s) 55, 167, 415, 476, 1569
MmeI TCCRAC 3 cut(s) 205, 966, 1003
MroXI GAANNNNTTC 1 cut(s) 1191
MseI TTAA 3 cut(s) 974, 1062, 1572
MslI CAYNNNNRTG 3 cut(s) 133, 596, 689
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 2 cut(s) 47, 565
Mva1269I GAATGC 1 cut(s) 1252
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 2 cut(s) 21, 384
MwoI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1154, 1276
NciI CCSGG 1 cut(s) 565
NcoI CCATGG 1 cut(s) 1218
NdeII GATC 6 cut(s) 125, 205, 529, 547, 1420, 1425
NlaIV GGNNCC 4 cut(s) 51, 207, 531, 587
NmuCI GTSAC 1 cut(s) 559
NspI RCATGY 1 cut(s) 1627
NspV TTCGAA 1 cut(s) 1364
PagI TCATGA 1 cut(s) 934
PauI GCGCGC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 45
PciI ACATGT 1 cut(s) 1623
PciSI GCTCTTC 1 cut(s) 2
PctI GAATGC 1 cut(s) 1252
PdmI GAANNNNTTC 1 cut(s) 1191
PfeI GAWTC 3 cut(s) 931, 1199, 1379
PkrI GCNGC 4 cut(s) 82, 329, 332, 921
Ppu21I YACGTR 1 cut(s) 105
PscI ACATGT 1 cut(s) 1623
PshBI ATTAAT 1 cut(s) 1572
Psp6I CCWGG 1 cut(s) 45
PspEI GGTNACC 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 4 cut(s) 51, 207, 531, 587
PspPI GGNCC 3 cut(s) 178, 585, 1329
PsuI RGATCY 2 cut(s) 205, 529
PteI GCGCGC 1 cut(s) 382
RsaI GTAC 5 cut(s) 107, 285, 908, 1339, 1585
RsaNI GTAC 5 cut(s) 106, 284, 907, 1338, 1584
RseI CAYNNNNRTG 3 cut(s) 133, 596, 689
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 3 cut(s) 974, 1062, 1572
SatI GCNGC 4 cut(s) 81, 328, 331, 920
Sau3AI GATC 6 cut(s) 125, 205, 529, 547, 1420, 1425
Sau96I GGNCC 3 cut(s) 178, 585, 1329
ScaI AGTACT 1 cut(s) 1339
ScrFI CCNGG 2 cut(s) 47, 565
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 2 cut(s) 306, 961
SfcI CTRYAG 1 cut(s) 783
SfuI TTCGAA 1 cut(s) 1364
SinI GGWCC 2 cut(s) 178, 585
SmiMI CAYNNNNRTG 3 cut(s) 133, 596, 689
Sse9I AATT 5 cut(s) 55, 167, 415, 476, 1569
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 8 cut(s) 238, 328, 589, 754, 919, 958, 1464, 1515
SspI AATATT 1 cut(s) 1206
SspMI CTAG 1 cut(s) 1341
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 45, 563
StyI CCWWGG 1 cut(s) 1218
TaaI ACNGT 1 cut(s) 1481
TaiI ACGT 3 cut(s) 107, 285, 1357
TaqI TCGA 4 cut(s) 279, 450, 672, 1364
TasI AATT 5 cut(s) 55, 167, 415, 476, 1569
TatI WGTACW 2 cut(s) 906, 1337
TauI GCSGC 2 cut(s) 330, 922
TfiI GAWTC 3 cut(s) 931, 1199, 1379
Tru1I TTAA 3 cut(s) 974, 1062, 1572
Tru9I TTAA 3 cut(s) 974, 1062, 1572
TscAI CASTG 2 cut(s) 166, 929
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 2 cut(s) 80, 330
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 5 cut(s) 614, 1314, 1388, 1590, 1630
TspRI CASTG 2 cut(s) 166, 929
VpaK11BI GGWCC 2 cut(s) 178, 585
VspI ATTAAT 1 cut(s) 1572
XapI RAATTY 2 cut(s) 167, 415
XceI RCATGY 1 cut(s) 1627
XmnI GAANNNNTTC 1 cut(s) 1191
XspI CTAG 1 cut(s) 1341
ZrmI AGTACT 1 cut(s) 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.