Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Reverse (-)

49727867 .. 49729026

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAAAGCTAGGAAGAAGGCCAAGAAGGAGTACAACAACAAGGTGCGGAGTTTGGCACACAATGCCAAGAGGCTTGACAGGAGGGTGAGGGTCATGCAGATGACGGCGAAGACGGAGGAGGAGAGAAAGAGGGAGATGGAAGAGGAGAGGGAGAGGAGGAAGCGGTTAAAGAAAGAGAAGTTGGAGAAGGCGGTTAGGGAGTATGAGGAGCCGGAGTGGACCAAAGTGGTTGAGAGGAGGACAAAATATGGTGATCCTGAGGAGGAGAAGGTAAAAGAGATAGAGGAATGGGAGTGTGTTGTTTGTAGGAACGGATTTAGGAGTGAGAAGCAGTGCAGAAATCACGAGCAGTCGAAGAAGCACCTTCGTATGGTTTCAGAGTTAATAGATTTATTGCAATCTAACCATCGTGAAATTGTTGTTGGGTCGATGGAGGACAAGAGGGATTATGAAGAGCTTGATAAAGAAGAGGTTTCGGTGAAAGCAAAAGGGGATGAAGTGGTTGGAGAGAGTGATGAGTTTTCTAATTGTGTCAGTGACAATAGGTGGGAAAACTTTAGTGAAGCAGTTGAATATGCTGAGGAGGAGGAGGAGGTGGATGAGATGGATGTTCTTCTAGCCATGGTGGCAAGGGAAAAGGCTATGGAAAAGGTTGGTGAAATTTTTTTTGAAGCAATGGTTGAGTACATGGCGACCAGTAGTCATGTGGATAACGATATCGATGAGGTAGCTATAAAACATGATCAGCTAAAGCATATGAATAATAATGGAGGAGACAGGAAACCGAAGAGAAGGAGGAGGAATGCATGCATGGGAGTGGGCATGTGGTTTATAGGAAGGGATTTAGTGTACGCCATAAAAGTGCAGACTGGTTCCTTAGCAGTGGTTTCGAAACTGTCGTCGGCACAAATGTTTCCAACATATATATATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

311

Amino Acids

36.77

Weight (kDa)

5.98

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	46, 163, 191
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	660
AfaI	GTAC	3 cut(s)	32, 686, 851
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	572, 671
AhdI	GACNNNNNGTC	1 cut(s)	699
AjuI	GAANNNNNNNTTGG	4 cut(s)	164, 196, 405, 437
AluBI	AGCT	4 cut(s)	8, 457, 731, 748
AluI	AGCT	4 cut(s)	8, 457, 731, 748
Alw26I	GTCTC	1 cut(s)	768
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	660
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	4 cut(s)	97, 263, 490, 668
AsuII	TTCGAA	1 cut(s)	890
AvaII	GGWCC	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	258
BauI	CACGAG	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	116
BbvCI	CCTCAGC	1 cut(s)	579
BccI	CCATC	4 cut(s)	130, 414, 424, 598
BceAI	ACGGC	1 cut(s)	120
BcgI	CGANNNNNNTGC	2 cut(s)	870, 904
BclI	TGATCA	1 cut(s)	742
BcoDI	GTCTC	1 cut(s)	768
BfaI	CTAG	2 cut(s)	9, 617
BglI	GCCNNNNNGGC	1 cut(s)	626
Bme18I	GGWCC	1 cut(s)	219
BmeRI	GACNNNNNGTC	1 cut(s)	699
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	210, 874
BpiI	GAAGAC	1 cut(s)	116
Bpu10I	CCTNAGC	2 cut(s)	579, 877
Bpu14I	TTCGAA	1 cut(s)	890
Bsa29I	ATCGAT	1 cut(s)	720
BsaJI	CCNNGG	1 cut(s)	621
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
Bse1I	ACTGG	2 cut(s)	696, 874
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	3 cut(s)	499, 604, 613
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	249, 570
BseNI	ACTGG	2 cut(s)	696, 874
BsgI	GTGCAG	2 cut(s)	355, 884
BshFI	GGCC	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	370
BsmAI	GTCTC	1 cut(s)	768
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	890
Bsp143I	GATC	2 cut(s)	253, 742
Bsp19I	CCATGG	1 cut(s)	621
BspACI	CCGC	3 cut(s)	46, 163, 191
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	250, 571
BspDI	ATCGAT	1 cut(s)	720
BspLI	GGNNCC	2 cut(s)	210, 874
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	890
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	696, 874
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	2 cut(s)	253, 742
BssSI	CACGAG	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	897
Bst6I	CTCTTC	4 cut(s)	135, 447, 462, 782
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	890
BstC8I	GCNNGC	1 cut(s)	808
BstDEI	CTNAG	3 cut(s)	258, 579, 877
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	3 cut(s)	499, 604, 613
BstKTI	GATC	2 cut(s)	256, 745
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	2 cut(s)	253, 742
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 626
BstNSI	RCATGY	2 cut(s)	810, 826
BstV2I	GAAGAC	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	720
Bsu36I	CCTNAGG	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	20
BsuTUI	ATCGAT	1 cut(s)	720
BtgI	CCRYGG	1 cut(s)	621
BtsCI	GGATG	3 cut(s)	499, 604, 613
BtsI	GCAGTG	2 cut(s)	338, 888
BtsIMutI	CAGTG	3 cut(s)	338, 541, 888
Cac8I	GCNNGC	1 cut(s)	808
Cfr13I	GGNCC	1 cut(s)	219
ClaI	ATCGAT	1 cut(s)	720
Csp6I	GTAC	3 cut(s)	31, 685, 850
CviAII	CATG	8 cut(s)	94, 622, 688, 704, 740, 807, 811, 823
CviJI	RGCY	9 cut(s)	8, 20, 73, 211, 457, 620, 641, 731, 748
CviKI_1	RGCY	9 cut(s)	8, 20, 73, 211, 457, 620, 641, 731, 748
CviQI	GTAC	3 cut(s)	31, 685, 850
DdeI	CTNAG	3 cut(s)	258, 579, 877
DpnI	GATC	2 cut(s)	255, 744
DpnII	GATC	2 cut(s)	253, 742
DriI	GACNNNNNGTC	1 cut(s)	699
Eam1104I	CTCTTC	4 cut(s)	135, 447, 462, 782
Eam1105I	GACNNNNNGTC	1 cut(s)	699
EarI	CTCTTC	4 cut(s)	135, 447, 462, 782
Eco130I	CCWWGG	1 cut(s)	621
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	258
EcoRV	GATATC	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	621
EcoT22I	ATGCAT	2 cut(s)	808, 812
ErhI	CCWWGG	1 cut(s)	621
FaeI	CATG	8 cut(s)	97, 625, 691, 707, 743, 810, 814, 826
FatI	CATG	8 cut(s)	93, 621, 687, 703, 739, 806, 810, 822
FauNDI	CATATG	1 cut(s)	756
FbaI	TGATCA	1 cut(s)	742
FokI	GGATG	3 cut(s)	506, 611, 620
FspBI	CTAG	2 cut(s)	9, 617
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	8 cut(s)	97, 625, 691, 707, 743, 810, 814, 826
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	4 cut(s)	97, 263, 490, 668
Hpy166II	GTNNAC	2 cut(s)	219, 850
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	3 cut(s)	257, 344, 410
Hpy8I	GTNNAC	2 cut(s)	219, 850
Hpy99I	CGWCG	1 cut(s)	904
HpyAV	CCTTC	7 cut(s)	10, 19, 181, 262, 374, 786, 831
HpyCH4III	ACNGT	1 cut(s)	897
HpyCH4V	TGCA	6 cut(s)	97, 336, 397, 806, 810, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 626
HpyF3I	CTNAG	3 cut(s)	258, 579, 877
Hsp92II	CATG	8 cut(s)	97, 625, 691, 707, 743, 810, 814, 826
Ksp22I	TGATCA	1 cut(s)	742
Kzo9I	GATC	2 cut(s)	253, 742
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	6 cut(s)	64, 225, 270, 709, 763, 855
MaeI	CTAG	2 cut(s)	9, 617
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	2 cut(s)	255, 744
MboI	GATC	2 cut(s)	253, 742
MboII	GAAGA	8 cut(s)	25, 121, 152, 367, 464, 479, 605, 799
MluCI	AATT	3 cut(s)	414, 526, 660
MmeI	TCCRAC	2 cut(s)	162, 484
Mph1103I	ATGCAT	2 cut(s)	808, 812
MseI	TTAA	3 cut(s)	167, 383, 934
MslI	CAYNNNNRTG	3 cut(s)	98, 815, 860
MspI	CCGG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	808
MwoI	GCNNNNNNNGC	2 cut(s)	62, 626
NcoI	CCATGG	1 cut(s)	621
NdeI	CATATG	1 cut(s)	756
NdeII	GATC	2 cut(s)	253, 742
NlaIII	CATG	8 cut(s)	97, 625, 691, 707, 743, 810, 814, 826
NlaIV	GGNNCC	2 cut(s)	210, 874
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	2 cut(s)	808, 812
NspI	RCATGY	2 cut(s)	810, 826
NspV	TTCGAA	1 cut(s)	890
PaeI	GCATGC	1 cut(s)	810
PciSI	GCTCTTC	1 cut(s)	447
PcsI	WCGNNNNNNNCGW	1 cut(s)	896
PctI	GAATGC	1 cut(s)	808
PspN4I	GGNNCC	2 cut(s)	210, 874
PspPI	GGNCC	1 cut(s)	219
RsaI	GTAC	3 cut(s)	32, 686, 851
RsaNI	GTAC	3 cut(s)	31, 685, 850
RseI	CAYNNNNRTG	3 cut(s)	98, 815, 860
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	167, 383, 934
Sau3AI	GATC	2 cut(s)	253, 742
Sau96I	GGNCC	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	890
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	3 cut(s)	98, 815, 860
SphI	GCATGC	1 cut(s)	810
Sse9I	AATT	3 cut(s)	414, 526, 660
SsiI	CCGC	3 cut(s)	46, 163, 191
SspMI	CTAG	2 cut(s)	9, 617
StyI	CCWWGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	897
TaqI	TCGA	4 cut(s)	353, 428, 720, 890
TasI	AATT	3 cut(s)	414, 526, 660
TatI	WGTACW	2 cut(s)	30, 684
Tru1I	TTAA	3 cut(s)	167, 383, 934
Tru9I	TTAA	3 cut(s)	167, 383, 934
TscAI	CASTG	3 cut(s)	338, 541, 888
TseFI	GTSAC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	4 cut(s)	17, 465, 510, 773
TspGWI	ACGGA	2 cut(s)	128, 327
TspRI	CASTG	3 cut(s)	338, 541, 888
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	660
XceI	RCATGY	2 cut(s)	810, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
XspI	CTAG	2 cut(s)	9, 617
Zsp2I	ATGCAT	2 cut(s)	808, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.