Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000708.1

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

216 .. 566

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000708.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggtgaagagcaccgagcgcgtctgctactacgagaccttaggcctcgaacccaactgctcaatggatgatgtcagacatgcctaccatgaactttccataatataccaccaggacaaatacaagtccagttgcggcatgacagaagacgaagccgccaaattcctagagatcaaagacgcctacaacattctcaaagaacccgatgagcgggccttctacgactcctaccgccaggcctacgctgtcccagaggctttcaaccctgacctcaaagccgctttcgacgtacaacatcaacttcaatggctactccgattccaaccgcggtttctacaaggtctattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

116

Amino Acids

13.74

Weight (kDa)

5.12

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	211
AccII	CGCG	2 cut(s)	21, 328
AciI	CCGC	7 cut(s)	135, 156, 211, 232, 279, 326, 328
AcsI	RAATTY	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgsI	TTSAA	2 cut(s)	262, 305
AjnI	CCWGG	2 cut(s)	111, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	3 cut(s)	43, 213, 237
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	16
AxyI	CCTNAGG	1 cut(s)	40
BbsI	GAAGAC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	14
BciT130I	CCWGG	2 cut(s)	113, 236
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	3 cut(s)	136, 156, 279
BlsI	GCNGC	3 cut(s)	137, 157, 280
Bme1390I	CCNGG	2 cut(s)	113, 236
BmgT120I	GGNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	113, 236
BpiI	GAAGAC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse1I	ACTGG	1 cut(s)	129
Bse21I	CCTNAGG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	113, 236
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	129
Bsh1236I	CGCG	2 cut(s)	21, 328
BshFI	GGCC	3 cut(s)	45, 215, 239
BsiHKAI	GWGCWC	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	45, 215, 239
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	7 cut(s)	135, 156, 211, 232, 279, 326, 328
BspANI	GGCC	3 cut(s)	45, 215, 239
BspFNI	CGCG	2 cut(s)	21, 328
BspQI	GCTCTTC	1 cut(s)	2
BspTNI	GGTCTC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	113, 236
Bst6I	CTCTTC	1 cut(s)	2
BstACI	GRCGYC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	2 cut(s)	21, 328
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	2 cut(s)	113, 236
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	111, 234
BstUI	CGCG	2 cut(s)	21, 328
BstV2I	GAAGAC	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	45, 215, 239
BtgI	CCRYGG	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	213
Cfr42I	CCGCGG	1 cut(s)	329
CseI	GACGC	2 cut(s)	10, 188
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	3 cut(s)	80, 89, 139
CviJI	RGCY	7 cut(s)	45, 155, 215, 239, 257, 278, 310
CviKI_1	RGCY	7 cut(s)	45, 155, 215, 239, 257, 278, 310
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
Eco147I	AGGCCT	2 cut(s)	45, 239
Eco31I	GGTCTC	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	111, 234
FaeI	CATG	3 cut(s)	83, 92, 142
FaiI	YATR	5 cut(s)	81, 90, 101, 106, 140
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	3 cut(s)	79, 88, 138
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	136, 156, 279
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	136, 156, 279
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	3 cut(s)	136, 156, 279
HaeIII	GGCC	3 cut(s)	45, 215, 239
HgaI	GACGC	2 cut(s)	10, 188
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	83, 92, 142
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HinfI	GANTC	2 cut(s)	224, 318
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	77, 317, 350
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	180
Hsp92II	CATG	3 cut(s)	83, 92, 142
HspAI	GCGC	1 cut(s)	19
KspI	CCGCGG	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	171
LguI	GCTCTTC	1 cut(s)	2
LpnPI	CCDG	7 cut(s)	98, 125, 142, 221, 248, 264, 279
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	1 cut(s)	288
MalI	GATC	1 cut(s)	173
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	19, 158
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	56, 247, 281
MspA1I	CMGCKG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	113, 236
MvaI	CCWGG	2 cut(s)	113, 236
MvnI	CGCG	2 cut(s)	21, 328
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	3 cut(s)	83, 92, 142
NspI	RCATGY	1 cut(s)	83
PceI	AGGCCT	2 cut(s)	45, 239
PciSI	GCTCTTC	1 cut(s)	2
PfeI	GAWTC	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	137, 157, 280
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	111, 234
PspGI	CCWGG	2 cut(s)	111, 234
PspPI	GGNCC	1 cut(s)	213
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SacII	CCGCGG	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	2
SatI	GCNGC	3 cut(s)	136, 156, 279
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	113, 236
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	4 cut(s)	41, 273, 291, 343
Sfr303I	CCGCGG	1 cut(s)	329
SgrBI	CCGCGG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	161
SseBI	AGGCCT	2 cut(s)	45, 239
SsiI	CCGC	7 cut(s)	135, 156, 211, 232, 279, 326, 328
SspMI	CTAG	1 cut(s)	167
StuI	AGGCCT	2 cut(s)	45, 239
StyD4I	CCNGG	2 cut(s)	111, 234
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	2 cut(s)	48, 285
TasI	AATT	1 cut(s)	161
TauI	GCSGC	3 cut(s)	138, 158, 281
TfiI	GAWTC	1 cut(s)	318
TspDTI	ATGAA	1 cut(s)	105
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.