Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

17634782 .. 17635609

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGCGGGCCTTCTACGACTCCTACCGCCAGACCTACGCTGTCCCAGAGGCTTTCAACCCCGACCTCAAAGCCGCTTTCGACGTACAACATCAACTTCAATGGCTACTCCGATTCCAACCGCGGTTTCTACAAGGTCTATTCTGACGTTTTCAACAGGATTTACGCCATCGAGCGTGCTTTTCAGGAAAGGAATGACCTACCGTGGGATTCGGTTCACAAGCCTCCGGACATGGGCAATCTCGAGAGCCCGTATCCCGAGGTTGTTAAGTTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGACCCGTATGATGAGTATGATCTCAGTAGGGTCATCCGCAGGGGGTATAAGCGGTGGTTGAAAAAGAATATGAAAGCGAGGAAGAAGGCTAAGAAGGAGTACAACAACAAGGTGCGGGATTTGGCACATAATGCGAAGAGGCTGGACAAGAGGGTCATGCAGATGATGGCGAAGAGGGAGGAGGAAAGGAAGAGGGAGATGGAGAAGGAAAGGGAGAGGAGGAAGCGGTTGAAGAAGGAGAAGCTGGCGAAGGCCGCTATGGAGTATGAGGAGCCGGAGTGGACCAAAGTGGTTGAGAGGAAGAGAAAATATGGTGATCCTGAGGATGAGAAGGAAAAGGAGAGAGAGGAATGGGAGTGCGTGGTTTGTAGAAAGGGGTTTAGGAATGAAAAGCAGTGTCGGAATCACGAGCAGTCGAAGAAGCACCTCCGCATGGTTATGGAGTTGCTGAAGTTGAAACATTATGATATGGTTGCGGAGTTGATTGAGGTAGAGAGAAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

275

Amino Acids

33.54

Weight (kDa)

9.49

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZUO1-like_ZHD	PF21884	43 - 159	1.7e-17	Zuotin-like, zuotin homology domain
zf-C2H2_jaz	PF12171	225 - 249	3.7e-07	Zinc-finger double-stranded RNA-binding
zf-met	PF12874	225 - 249	2.6e-06	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	226
AclWI	GGATC	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	791
AfaI	GTAC	2 cut(s)	86, 422
AfiI	CCNNNNNNNGG	3 cut(s)	205, 233, 754
AgsI	TTSAA	6 cut(s)	57, 100, 154, 382, 553, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AluBI	AGCT	1 cut(s)	565
AluI	AGCT	1 cut(s)	565
AlwI	GGATC	1 cut(s)	632
Ama87I	CYCGRG	2 cut(s)	242, 257
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	2 cut(s)	8, 573
AspS9I	GGNCC	3 cut(s)	8, 322, 603
AsuHPI	GGTGA	1 cut(s)	647
AvaI	CYCGRG	2 cut(s)	242, 257
AvaII	GGWCC	2 cut(s)	322, 603
AxyI	CCTNAGG	1 cut(s)	642
BanII	GRGCYC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	728
BccI	CCATC	3 cut(s)	176, 481, 514
BciVI	GTATCC	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	2 cut(s)	74, 576
BlsI	GCNGC	2 cut(s)	75, 577
Bme18I	GGWCC	2 cut(s)	322, 603
BmeT110I	CYCGRG	2 cut(s)	242, 257
BmgT120I	GGNCC	3 cut(s)	8, 322, 603
BmiI	GGNNCC	2 cut(s)	324, 594
BsaJI	CCNNGG	3 cut(s)	121, 203, 258
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	4 cut(s)	311, 341, 584, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 233, 754
Bse1I	ACTGG	1 cut(s)	287
Bse21I	CCTNAGG	1 cut(s)	642
BseAI	TCCGGA	1 cut(s)	226
BseDI	CCNNGG	3 cut(s)	121, 203, 258
BseGI	GGATG	2 cut(s)	354, 652
BseLI	CCNNNNNNNGG	3 cut(s)	205, 233, 754
BseMII	CTCAG	2 cut(s)	358, 633
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	3 cut(s)	515, 553, 605
BseYI	CCCAGC	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	10, 575
BsiHKCI	CYCGRG	2 cut(s)	242, 257
BsiSI	CCGG	2 cut(s)	227, 596
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	205, 233, 754
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	10, 575
BsoBI	CYCGRG	2 cut(s)	242, 257
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	340, 637
BspANI	GGCC	2 cut(s)	10, 575
BspCNI	CTCAG	2 cut(s)	357, 634
BspEI	TCCGGA	1 cut(s)	226
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	324, 594
BspPI	GGATC	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	121, 203, 258
BssMI	GATC	2 cut(s)	340, 637
BssSI	CACGAG	1 cut(s)	728
Bst2BI	CACGAG	1 cut(s)	728
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	4 cut(s)	452, 488, 506, 617
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	3 cut(s)	8, 177, 567
BstDEI	CTNAG	3 cut(s)	344, 411, 642
BstDSI	CCRYGG	2 cut(s)	121, 203
BstF5I	GGATG	2 cut(s)	354, 652
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	343, 640
BstMBI	GATC	2 cut(s)	340, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 575
BstUI	CGCG	1 cut(s)	123
Bsu36I	CCTNAGG	1 cut(s)	642
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	10, 575
BtgI	CCRYGG	2 cut(s)	121, 203
BtsCI	GGATG	2 cut(s)	354, 652
BtsI	GCAGTG	1 cut(s)	722
BtsIMutI	CAGTG	1 cut(s)	722
Cac8I	GCNNGC	3 cut(s)	8, 177, 567
Cfr13I	GGNCC	3 cut(s)	8, 322, 603
Cfr42I	CCGCGG	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	85, 421
CviAII	CATG	3 cut(s)	232, 478, 754
CviQI	GTAC	2 cut(s)	85, 421
DdeI	CTNAG	3 cut(s)	344, 411, 642
DpnI	GATC	2 cut(s)	342, 639
DpnII	GATC	2 cut(s)	340, 637
DrdI	GACNNNNNNGTC	1 cut(s)	473
DseDI	GACNNNNNNGTC	1 cut(s)	473
Eam1104I	CTCTTC	4 cut(s)	452, 488, 506, 617
EarI	CTCTTC	4 cut(s)	452, 488, 506, 617
Eco24I	GRGCYC	1 cut(s)	251
Eco47I	GGWCC	2 cut(s)	322, 603
Eco57I	CTGAAG	1 cut(s)	791
Eco81I	CCTNAGG	1 cut(s)	642
Eco88I	CYCGRG	2 cut(s)	242, 257
EcoO109I	RGGNCCY	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	251
FaeI	CATG	3 cut(s)	235, 481, 757
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	3 cut(s)	231, 477, 753
FauI	CCCGC	1 cut(s)	429
Fnu4HI	GCNGC	2 cut(s)	74, 576
FokI	GGATG	2 cut(s)	341, 659
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	2 cut(s)	74, 576
GluI	GCNGC	2 cut(s)	74, 576
GsaI	CCCAGC	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	10, 575
HapII	CCGG	2 cut(s)	227, 596
Hin1II	CATG	3 cut(s)	235, 481, 757
HinfI	GANTC	4 cut(s)	19, 113, 209, 724
HpaII	CCGG	2 cut(s)	227, 596
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	2 cut(s)	217, 603
Hpy188I	TCNGA	3 cut(s)	112, 145, 723
Hpy188III	TCNNGA	7 cut(s)	185, 227, 242, 244, 257, 641, 728
Hpy8I	GTNNAC	2 cut(s)	217, 603
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	7 cut(s)	21, 400, 409, 520, 550, 565, 646
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	2 cut(s)	83, 147
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 575
HpyF3I	CTNAG	3 cut(s)	344, 411, 642
HpySE526I	ACGT	2 cut(s)	83, 147
Hsp92II	CATG	3 cut(s)	235, 481, 757
Kpn2I	TCCGGA	1 cut(s)	226
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	340, 637
LmnI	GCTCC	1 cut(s)	592
MaeII	ACGT	2 cut(s)	83, 147
MalI	GATC	2 cut(s)	342, 639
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	340, 637
MboII	GAAGA	7 cut(s)	415, 469, 505, 523, 565, 634, 751
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	1 cut(s)	820
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	141, 701
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	2 cut(s)	267, 826
MslI	CAYNNNNRTG	2 cut(s)	482, 758
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	2 cut(s)	227, 596
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	452, 575
NdeII	GATC	2 cut(s)	340, 637
NlaIII	CATG	3 cut(s)	235, 481, 757
NlaIV	GGNNCC	2 cut(s)	324, 594
PaeR7I	CTCGAG	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	113, 209, 724
PkrI	GCNGC	2 cut(s)	75, 577
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
PspFI	CCCAGC	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	324, 594
PspPI	GGNCC	3 cut(s)	8, 322, 603
PspPPI	RGGWCCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	86, 422
RsaNI	GTAC	2 cut(s)	85, 421
RseI	CAYNNNNRTG	2 cut(s)	482, 758
SacII	CCGCGG	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	267, 826
SatI	GCNGC	2 cut(s)	74, 576
Sau3AI	GATC	2 cut(s)	340, 637
Sau96I	GGNCC	3 cut(s)	8, 322, 603
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	251
Sfr274I	CTCGAG	1 cut(s)	242
Sfr303I	CCGCGG	1 cut(s)	124
SgrBI	CCGCGG	1 cut(s)	124
SinI	GGWCC	2 cut(s)	322, 603
SlaI	CTCGAG	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	482, 758
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	1 cut(s)	820
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	2 cut(s)	86, 150
TaqI	TCGA	4 cut(s)	80, 171, 243, 737
TasI	AATT	1 cut(s)	820
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	2 cut(s)	76, 578
TfiI	GAWTC	3 cut(s)	113, 209, 724
Tru1I	TTAA	2 cut(s)	267, 826
Tru9I	TTAA	2 cut(s)	267, 826
TscAI	CASTG	1 cut(s)	722
TspDTI	ATGAA	2 cut(s)	407, 723
TspRI	CASTG	1 cut(s)	722
VpaK11BI	GGWCC	2 cut(s)	322, 603
XhoI	CTCGAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.