RLG00000003705

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002151
Physical Location & Seq
Reverse (-)
51848083 .. 51852213
4131 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003705

Sequence Viewer

Length: 492 bp
ATGGGCAATCTCGACACCCCTTATCCTGAGGTTGCTAAATTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCATATGATGAGTATGATCTAAGTCAGATCTCTCGCAGAGGGGTGAAGTTTTGGTCCCTCATAAACATGAAGGCGAGGAAGAAAGCAAAGAAGGAATACAATAATAAGCAGTATGTCCTTCCTCAAGAAACTGCGAAAAGGATCGACAGGAGGGTCATGCAGATGGTAGCAAAGAGGGAGGAGGAGAGAAAGAGGGAGATAGAGGAAGAGAGGGAGAGAAGAAAGCGGTTGAAGAAAGAGAAGTTGGTGAAGGCTATGGAGTATGAGGAGCAGGAGTGGACGAAACCGGTTGAGAGGAAGAGAAAATTATATAGAAACAAGGAGGAGGAGGAGGAAAAAGAGAGAGATGAATGGGAGTGTGTAGTTTGTAGGAAGGTGTTTAGGAGTGAGCGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

164

Amino Acids

20.5

Weight (kDa)

9.19

Isoelectric Point (pI)

72.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZUO1-like_ZHD PF21884 1 - 83 6.3e-11 Zuotin-like, zuotin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AccBSI CCGCTC 1 cut(s) 484
AciI CCGC 2 cut(s) 319, 484
AclWI GGATC 3 cut(s) 86, 99, 242
AcsI RAATTY 1 cut(s) 38
AgeI ACCGGT 1 cut(s) 379
AgsI TTSAA 1 cut(s) 325
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AlwI GGATC 3 cut(s) 86, 99, 242
ApoI RAATTY 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 148, 352
AvaII GGWCC 1 cut(s) 147
AxyI CCTNAGG 1 cut(s) 27
BamHI GGATCC 1 cut(s) 91
BccI CCATC 1 cut(s) 250
BglII AGATCT 1 cut(s) 120
BisI GCNGC 1 cut(s) 485
BlsI GCNGC 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 2 cut(s) 93, 149
BpuEI CTTGAG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 379
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 56
Bse21I CCTNAGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 6 cut(s) 287, 290, 374, 431, 434, 437
BseYI CCCAGC 1 cut(s) 84
BshTI ACCGGT 1 cut(s) 379
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
Bsp143I GATC 4 cut(s) 91, 109, 120, 234
BspACI CCGC 2 cut(s) 319, 484
BspCNI CTCAG 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 93, 149
BspPI GGATC 3 cut(s) 86, 99, 242
BsrBI CCGCTC 1 cut(s) 484
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 1 cut(s) 379
BssMI GATC 4 cut(s) 91, 109, 120, 234
Bst6I CTCTTC 2 cut(s) 294, 386
BstDEI CTNAG 2 cut(s) 27, 113
BstKTI GATC 4 cut(s) 94, 112, 123, 237
BstMBI GATC 4 cut(s) 91, 109, 120, 234
BstX2I RGATCY 2 cut(s) 91, 120
BstYI RGATCY 2 cut(s) 91, 120
Bsu36I CCTNAGG 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 147
CspAI ACCGGT 1 cut(s) 379
CviAII CATG 2 cut(s) 160, 250
CviJI RGCY 2 cut(s) 55, 347
CviKI_1 RGCY 2 cut(s) 55, 347
DdeI CTNAG 2 cut(s) 27, 113
DpnI GATC 4 cut(s) 93, 111, 122, 236
DpnII GATC 4 cut(s) 91, 109, 120, 234
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 2 cut(s) 294, 386
EarI CTCTTC 2 cut(s) 294, 386
Eco47I GGWCC 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 27
FaeI CATG 2 cut(s) 163, 253
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 159, 249
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 485
Fsp4HI GCNGC 1 cut(s) 485
GluI GCNGC 1 cut(s) 485
GsaI CCCAGC 1 cut(s) 88
HapII CCGG 1 cut(s) 380
Hin1II CATG 2 cut(s) 163, 253
HpaII CCGG 1 cut(s) 380
HphI GGTGA 2 cut(s) 148, 352
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 3 cut(s) 11, 26, 218
Hpy8I GTNNAC 1 cut(s) 372
HpyAV CCTTC 5 cut(s) 157, 178, 221, 337, 460
HpyCH4V TGCA 1 cut(s) 253
HpyF3I CTNAG 2 cut(s) 27, 113
Hsp92II CATG 2 cut(s) 163, 253
Kzo9I GATC 4 cut(s) 91, 109, 120, 234
LmnI GCTCC 1 cut(s) 361
LpnPI CCDG 6 cut(s) 37, 39, 70, 226, 350, 393
MalI GATC 4 cut(s) 93, 111, 122, 236
MbiI CCGCTC 1 cut(s) 484
MboI GATC 4 cut(s) 91, 109, 120, 234
MboII GAAGA 5 cut(s) 184, 311, 324, 337, 403
MflI RGATCY 2 cut(s) 91, 120
MluCI AATT 2 cut(s) 38, 398
MslI CAYNNNNRTG 2 cut(s) 158, 254
MspI CCGG 1 cut(s) 380
NdeI CATATG 1 cut(s) 97
NdeII GATC 4 cut(s) 91, 109, 120, 234
NlaIII CATG 2 cut(s) 163, 253
NlaIV GGNNCC 2 cut(s) 93, 149
PinAI ACCGGT 1 cut(s) 379
PkrI GCNGC 1 cut(s) 486
PspFI CCCAGC 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 93, 149
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 2 cut(s) 91, 120
RseI CAYNNNNRTG 2 cut(s) 158, 254
SatI GCNGC 1 cut(s) 485
Sau3AI GATC 4 cut(s) 91, 109, 120, 234
Sau96I GGNCC 1 cut(s) 147
SetI ASST 2 cut(s) 33, 471
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 158, 254
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
Sse9I AATT 2 cut(s) 38, 398
SsiI CCGC 2 cut(s) 319, 484
TaqI TCGA 2 cut(s) 12, 237
TasI AATT 2 cut(s) 38, 398
TauI GCSGC 1 cut(s) 487
TspDTI ATGAA 2 cut(s) 176, 456
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.