Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

18284166 .. 18285124

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17948

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGCAATCTCGAGAGCCCGTATCCCGAGGTTGTTAAGTTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGACCCGTATGATGAGTATGATCTCAGTAGGGTCATCCGCAGGGGGTATAAGCGGTGGTTGAAAAAGAATATGAAAGCGAGGAAGAAGGCTAAGAAGGAGTACAACAACAAGGTGCGGGATTTGGCACATAATGCGAAGAGGCTGGACAAGAGGGTCATGCAGATGATGGCGAAGAGGGAGGAGGAAAGGAAGAGGGAGATGGAGAAGGAAAGGGAGAGGAGGAAGCGGTTGAAGAAGGAGAAGCTGGCGAAGGCCGCTATGGAGTATGAGGAGCCGGAGTGGACCAAAGTGGTTGAGAGGAAGAGAAAATATGGTGATCCTGAGGATGAGAAGGAAAAGGAGAGAGAGGAATGGGAGTGCGTGGTTTGTAGAAAGGGGTTTAGGAATGAAAAGCAGTGTCGGAATCACGAGCAGTCGAAGAAGCACCTCCGCATGGTTATGGAGTTGCTGAAGTTGAAACATTATGATATGGTTGCGGAGTTGATTGAGGTAGAGAGAAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

198

Amino Acids

24.76

Weight (kDa)

9.49

Isoelectric Point (pI)

60.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZUO1-like_ZHD	PF21884	1 - 82	3.4e-16	Zuotin-like, zuotin homology domain
zf-C2H2_jaz	PF12171	148 - 172	2.3e-07	Zinc-finger double-stranded RNA-binding
zf-met	PF12874	148 - 172	1.7e-06	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	242
AciI	CCGC	7 cut(s)	127, 142, 205, 316, 345, 520, 566
AclWI	GGATC	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	560
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	151, 322, 547
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	2 cut(s)	11, 26
AoxI	GGCC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	91, 372
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	2 cut(s)	11, 26
AvaII	GGWCC	2 cut(s)	91, 372
AxyI	CCTNAGG	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	497
BccI	CCATC	2 cut(s)	250, 283
BciVI	GTATCC	1 cut(s)	33
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme18I	GGWCC	2 cut(s)	91, 372
BmeT110I	CYCGRG	2 cut(s)	11, 26
BmgT120I	GGNCC	2 cut(s)	91, 372
BmiI	GGNNCC	2 cut(s)	93, 363
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 353, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	56
Bse21I	CCTNAGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	123, 421
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	127, 402
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	3 cut(s)	284, 322, 374
BseYI	CCCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	344
BsiHKCI	CYCGRG	2 cut(s)	11, 26
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	523
BsnI	GGCC	1 cut(s)	344
BsoBI	CYCGRG	2 cut(s)	11, 26
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	109, 406
BspACI	CCGC	7 cut(s)	127, 142, 205, 316, 345, 520, 566
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	2 cut(s)	126, 403
BspLI	GGNNCC	2 cut(s)	93, 363
BspPI	GGATC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	109, 406
BssSI	CACGAG	1 cut(s)	497
Bst2BI	CACGAG	1 cut(s)	497
Bst6I	CTCTTC	4 cut(s)	221, 257, 275, 386
BstAPI	GCANNNNNTGC	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	113, 180, 411
BstF5I	GGATG	2 cut(s)	123, 421
BstKTI	GATC	2 cut(s)	112, 409
BstMBI	GATC	2 cut(s)	109, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 344
Bsu36I	CCTNAGG	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	123, 421
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	1 cut(s)	491
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	2 cut(s)	91, 372
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	247, 523
CviJI	RGCY	7 cut(s)	18, 55, 179, 232, 334, 344, 364
CviKI_1	RGCY	7 cut(s)	18, 55, 179, 232, 334, 344, 364
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	3 cut(s)	113, 180, 411
DpnI	GATC	2 cut(s)	111, 408
DpnII	GATC	2 cut(s)	109, 406
DrdI	GACNNNNNNGTC	1 cut(s)	242
DseDI	GACNNNNNNGTC	1 cut(s)	242
Eam1104I	CTCTTC	4 cut(s)	221, 257, 275, 386
EarI	CTCTTC	4 cut(s)	221, 257, 275, 386
Eco24I	GRGCYC	1 cut(s)	20
Eco47I	GGWCC	2 cut(s)	91, 372
Eco57I	CTGAAG	1 cut(s)	560
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	2 cut(s)	11, 26
EcoO109I	RGGNCCY	1 cut(s)	91
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	2 cut(s)	250, 526
FatI	CATG	2 cut(s)	246, 522
FauI	CCCGC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	110, 428
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	2 cut(s)	250, 526
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	372
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	5 cut(s)	11, 13, 26, 410, 497
Hpy8I	GTNNAC	1 cut(s)	372
HpyAV	CCTTC	6 cut(s)	169, 178, 289, 319, 334, 415
HpyCH4V	TGCA	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 344
HpyF3I	CTNAG	3 cut(s)	113, 180, 411
Hsp92II	CATG	2 cut(s)	250, 526
Kzo9I	GATC	2 cut(s)	109, 406
LmnI	GCTCC	1 cut(s)	361
LpnPI	CCDG	7 cut(s)	37, 70, 115, 218, 320, 378, 423
MalI	GATC	2 cut(s)	111, 408
MboI	GATC	2 cut(s)	109, 406
MboII	GAAGA	7 cut(s)	184, 238, 274, 292, 334, 403, 520
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	1 cut(s)	589
MmeI	TCCRAC	1 cut(s)	470
MseI	TTAA	2 cut(s)	36, 595
MslI	CAYNNNNRTG	2 cut(s)	251, 527
MspI	CCGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	221, 344
NdeII	GATC	2 cut(s)	109, 406
NlaIII	CATG	2 cut(s)	250, 526
NlaIV	GGNNCC	2 cut(s)	93, 363
PaeR7I	CTCGAG	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	1 cut(s)	346
PpuMI	RGGWCCY	1 cut(s)	91
Psp5II	RGGWCCY	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	93, 363
PspPI	GGNCC	2 cut(s)	91, 372
PspPPI	RGGWCCY	1 cut(s)	91
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	251, 527
SaqAI	TTAA	2 cut(s)	36, 595
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	2 cut(s)	109, 406
Sau96I	GGNCC	2 cut(s)	91, 372
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	33, 204, 336, 519, 582
Sfr274I	CTCGAG	1 cut(s)	11
SinI	GGWCC	2 cut(s)	91, 372
SlaI	CTCGAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	251, 527
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	589
SsiI	CCGC	7 cut(s)	127, 142, 205, 316, 345, 520, 566
TaqI	TCGA	2 cut(s)	12, 506
TasI	AATT	1 cut(s)	589
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	2 cut(s)	36, 595
Tru9I	TTAA	2 cut(s)	36, 595
TscAI	CASTG	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	176, 492
TspRI	CASTG	1 cut(s)	491
VpaK11BI	GGWCC	2 cut(s)	91, 372
XhoI	CTCGAG	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.