Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000785.1

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

172041 .. 172715

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000785.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggtaaagagcactgagcgcttttgctactatgatacgttaggcctcgaacccaactgctcgatggatgatacctacgctgtgccagaggctttcaaccccgacctcgaagccgccttcgacaacattaatttcaacggctactccgactccggccgcggcttttataaggtctactccgacgttttcgacaggatttacggcaatgagcgtgcatttcatgaaaaaaatgacccgccgtggggttctgttcacaaccctccgcgcatgggaaatacggacagcctgtatcctgaggttgttcagttttataactactggctcaactttagttccataatggatttttgctgggaggaaccgcatgatgagtacgattctgagtcaggtctcccgcagaagagtaaagctgtggtccgcctaaacatgaaagctaggaagaagaccaagaaggagtacaacaacaaggtgcatgcggagtttggcatacaatgccaagaggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

168

Amino Acids

19.6

Weight (kDa)

4.9

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	168, 312
AccI	GTMKAC	1 cut(s)	174
AccII	CGCG	2 cut(s)	159, 265
AciI	CCGC	9 cut(s)	114, 157, 159, 236, 263, 362, 395, 418, 476
AcoI	YGGCCR	1 cut(s)	154
AfaI	GTAC	2 cut(s)	374, 458
AfeI	AGCGCT	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	241, 242, 269
AgsI	TTSAA	2 cut(s)	97, 136
AluBI	AGCT	2 cut(s)	410, 434
AluI	AGCT	2 cut(s)	410, 434
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	395
Aor51HI	AGCGCT	1 cut(s)	20
AoxI	GGCC	2 cut(s)	43, 154
AseI	ATTAAT	1 cut(s)	129
AspLEI	GCGC	2 cut(s)	21, 267
AspS9I	GGNCC	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	415
AxyI	CCTNAGG	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	449
Bbv12I	GWGCWC	1 cut(s)	14
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	3 cut(s)	154, 217, 223
BciVI	GTATCC	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	114, 157, 160
BlsI	GCNGC	3 cut(s)	115, 158, 161
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	157, 239
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 134, 158, 164
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 242, 269
Bse1I	ACTGG	1 cut(s)	323
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	157, 239
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	3 cut(s)	241, 242, 269
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	3 cut(s)	6, 285, 372
BseNI	ACTGG	1 cut(s)	323
BseX3I	CGGCCG	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	159, 265
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	2 cut(s)	45, 156
BsiEI	CGRYCG	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	241, 242, 269
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	45, 156
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	14
BspACI	CCGC	9 cut(s)	114, 157, 159, 236, 263, 362, 395, 418, 476
BspANI	GGCC	2 cut(s)	45, 156
BspCNI	CTCAG	3 cut(s)	7, 286, 373
BspFNI	CGCG	2 cut(s)	159, 265
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	360
BspTNI	GGTCTC	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	2 cut(s)	157, 239
Bst6I	CTCTTC	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	213, 474
BstDEI	CTNAG	3 cut(s)	15, 294, 381
BstDSI	CCRYGG	2 cut(s)	157, 239
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	2 cut(s)	159, 265
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	2 cut(s)	21, 267
BstMAI	GTCTC	1 cut(s)	395
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 492
BstNSI	RCATGY	1 cut(s)	476
BstUI	CGCG	2 cut(s)	159, 265
BstV2I	GAAGAC	1 cut(s)	449
BstZI	CGGCCG	1 cut(s)	154
Bsu36I	CCTNAGG	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	2 cut(s)	45, 156
BtgI	CCRYGG	2 cut(s)	157, 239
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	2 cut(s)	213, 474
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	21, 267
Cfr13I	GGNCC	1 cut(s)	415
Cfr42I	CCGCGG	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	373, 457
CviAII	CATG	5 cut(s)	221, 268, 365, 427, 473
CviQI	GTAC	2 cut(s)	373, 457
DdeI	CTNAG	3 cut(s)	15, 294, 381
EaeI	YGGCCR	1 cut(s)	154
EagI	CGGCCG	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
EciI	GGCGGA	1 cut(s)	407
EclXI	CGGCCG	1 cut(s)	154
Eco147I	AGGCCT	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	415
Eco47III	AGCGCT	1 cut(s)	20
Eco52I	CGGCCG	1 cut(s)	154
Eco81I	CCTNAGG	1 cut(s)	294
FaeI	CATG	5 cut(s)	224, 271, 368, 430, 476
FatI	CATG	5 cut(s)	220, 267, 364, 426, 472
FauI	CCCGC	2 cut(s)	243, 402
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	3 cut(s)	114, 157, 160
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	3 cut(s)	114, 157, 160
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	2 cut(s)	20, 266
GluI	GCNGC	3 cut(s)	114, 157, 160
GsaI	CCCAGC	1 cut(s)	355
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	45, 156
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	2 cut(s)	21, 267
Hin1II	CATG	5 cut(s)	224, 271, 368, 430, 476
Hin6I	GCGC	2 cut(s)	19, 265
HinP1I	GCGC	2 cut(s)	19, 265
HinfI	GANTC	3 cut(s)	149, 377, 383
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	2 cut(s)	175, 253
Hpy188I	TCNGA	3 cut(s)	148, 181, 382
Hpy188III	TCNNGA	2 cut(s)	221, 293
Hpy8I	GTNNAC	2 cut(s)	175, 253
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	127, 445
HpyCH4IV	ACGT	2 cut(s)	38, 183
HpyCH4V	TGCA	2 cut(s)	215, 472
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 492
HpyF3I	CTNAG	3 cut(s)	15, 294, 381
HpySE526I	ACGT	2 cut(s)	38, 183
Hsp92II	CATG	5 cut(s)	224, 271, 368, 430, 476
HspAI	GCGC	2 cut(s)	19, 265
KspI	CCGCGG	1 cut(s)	160
LpnPI	CCDG	8 cut(s)	99, 166, 178, 299, 304, 306, 337, 372
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	38, 183
MboII	GAAGA	3 cut(s)	412, 451, 454
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	1 cut(s)	130
MlyI	GAGTC	2 cut(s)	143, 392
MmeI	TCCRAC	2 cut(s)	171, 204
MnlI	CCTC	7 cut(s)	56, 82, 116, 270, 289, 349, 493
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	1 cut(s)	153
MvnI	CGCG	2 cut(s)	159, 265
MwoI	GCNNNNNNNGC	2 cut(s)	18, 492
NlaIII	CATG	5 cut(s)	224, 271, 368, 430, 476
NlaIV	GGNNCC	1 cut(s)	360
NspI	RCATGY	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	476
PagI	TCATGA	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	3 cut(s)	115, 158, 161
PleI	GAGTC	2 cut(s)	143, 391
PpsI	GAGTC	2 cut(s)	143, 391
PshBI	ATTAAT	1 cut(s)	129
PsiI	TTATAA	2 cut(s)	168, 312
PspFI	CCCAGC	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	415
RsaI	GTAC	2 cut(s)	374, 458
RsaNI	GTAC	2 cut(s)	373, 457
SacII	CCGCGG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	114, 157, 160
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	2 cut(s)	143, 392
SduI	GDGCHC	1 cut(s)	14
Sfr303I	CCGCGG	1 cut(s)	160
SgrBI	CCGCGG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	415
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	1 cut(s)	130
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	9 cut(s)	114, 157, 159, 236, 263, 362, 395, 418, 476
SspMI	CTAG	1 cut(s)	435
StuI	AGGCCT	1 cut(s)	45
TaiI	ACGT	2 cut(s)	41, 186
TaqI	TCGA	5 cut(s)	48, 62, 108, 120, 189
TasI	AATT	1 cut(s)	130
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	3 cut(s)	116, 159, 162
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	209, 237, 443
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	129
XceI	RCATGY	1 cut(s)	476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.