RLG00000003700

dnaJ homolog subfamily C member

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
51827286 .. 51828926
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003700

Sequence Viewer

Length: 1641 bp
ATGGTGAAGAGCACAGAGCGCGTCTGCCACTACGAGACCTTAGGCCTCGAACCAAATTGCTCAGAAAAAGAAATCAAGGCTGCTCACAGGAAACTAATCCTCACGTACCATTGGGACAAATGTAGATCATCCCAATGCGGCTTGTCCCAAGAAGAAGCCACTGCCAAATTTTTAGAGGTCCAACAAGCCTACGAAATCCTTATGGATCCCATAAAGCGAGAAACCTATAACGCCTACCGCCAGACCTACGCTGTCCCTGAAGTTTTCAACCCCGACCTCGAAGTACCCTCTGACGGCATCGTCTTCAACGGCTACTCCAGCTCCAGCCGCAGCTTCTACAATGCCTACTCTGACATTTTTCAAAGGATTTACGCCAACGAGCGCGCTTTTCAAAAGAAGAACGACCTGCCGTGGAATTCGGTTCACAAGCCTCCAGACATGGGCAATCTCGACACCCCTTATCCTGAGGTTGTTCAATTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCACATGATGAGTATGATCTAAGTCAGGTCTCCTGGAGAGGGGTGAAGTTTTGGTCCCGCATAAACATGAAGGCAAGGAAGAAAGCAAGGAAGGAATACAACAATAAGGTGCGGAGTTTGGCACAAACTGCGAAAAGGCTCGACAGGAGGGTCATGCAGATGGTAGCGAAGAGGGAGGAGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGGAGGAAGCGGTTGAAGAAAGAGAAGTTGTTGAAGGCTATAGAGTATGAGGAGCAGGAGTGGACGAAACCGGTTGAGAGGAAGAGAAAATATAGTAACAAGGAGGAGGAGGAGGAAAAAGAGAGAGACGAATGGGAGTGTGTACTTTGCAGGAAGGTGTATAGGAGTGAGCGGCAGTGCAGGAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAAAGTTAATGGAGTTGTTGGAGGTTTTGGAGGAAAAACCAGATGAAGAAGAGGTTTTGGAGGAAGCAAAAAGGAATGAGGTGGTTGGAGGGAGTGATGGCGAAGAGGAGTTTGTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTGGAGGAGGATGAGATGGGTGTTCTTGAAGCAATGGTGGCGAGGCGAAAGACAATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCATGGCGAGTAGTAGTCAAGAGGTGAAGAATGCTGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACGCCAATAAGAATGAAGGAGAAAGGAAACCGAGGAGAAGAAGAGCCAAGAGTACTAGAACTGACGAACGTGATGGTTCAAATAATATGAAGGAATCCAAAACTGATTGTAGTGCAGAAAAAGGATATGATGAGGATCAGATCAATAAAAGGAAGGGTGGAGAGAGGAAAGAGAGGAGCGGTAAGAAGAGTAACGGTAAAGGAGATATTGAGCAGAAGAAAATGAGGAGTGGAGGAAGGAGTGACGAGAAGAAGGGTAAGAAGAGAAATGGTGGAGAAAGAAGAATTAATGAACATGGTACATTGGTACATCCTATTTTTCTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

64.42

Weight (kDa)

6.13

Isoelectric Point (pI)

57.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 77 4.1e-17 DnaJ domain
ZUO1-like_ZHD PF21884 119 - 228 1.3e-15 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 293 - 317 6.7e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 299, 680
Acc36I ACCTGC 1 cut(s) 414
AccBSI CCGCTC 2 cut(s) 916, 1491
AccII CGCG 2 cut(s) 21, 384
AciI CCGC 9 cut(s) 138, 238, 328, 589, 643, 754, 916, 955, 1491
AclWI GGATC 5 cut(s) 200, 213, 524, 537, 1455
AcsI RAATTY 2 cut(s) 167, 415
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 6 cut(s) 107, 285, 888, 1366, 1612, 1620
AfiI CCNNNNNNNGG 3 cut(s) 293, 440, 570
AgeI ACCGGT 1 cut(s) 814
AjnI CCWGG 1 cut(s) 563
AluBI AGCT 4 cut(s) 321, 333, 1111, 1306
AluI AGCT 4 cut(s) 321, 333, 1111, 1306
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 3 cut(s) 29, 565, 864
AlwI GGATC 5 cut(s) 200, 213, 524, 537, 1455
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 80, 330
ApoI RAATTY 2 cut(s) 167, 415
AseI ATTAAT 1 cut(s) 1599
AsiGI ACCGGT 1 cut(s) 814
Asp700I GAANNNNTTC 1 cut(s) 1218
AspLEI GCGC 3 cut(s) 21, 384, 386
AspS9I GGNCC 2 cut(s) 178, 585
AsuHPI GGTGA 5 cut(s) 16, 586, 1136, 1223, 1279
AvaII GGWCC 2 cut(s) 178, 585
AxyI CCTNAGG 2 cut(s) 40, 465
BaeI ACNNNNGTAYC 2 cut(s) 1602, 1635
BamHI GGATCC 2 cut(s) 205, 529
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 67, 342
BccI CCATC 5 cut(s) 685, 1055, 1076, 1153, 1379
BceAI ACGGC 3 cut(s) 310, 325, 394
BciT130I CCWGG 1 cut(s) 565
BcoDI GTCTC 3 cut(s) 29, 565, 864
BfaI CTAG 1 cut(s) 1368
BfmI CTRYAG 1 cut(s) 783
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 5 cut(s) 81, 139, 328, 331, 917
BlsI GCNGC 5 cut(s) 82, 140, 329, 332, 918
BmcAI AGTACT 1 cut(s) 1366
Bme1390I CCNGG 1 cut(s) 565
Bme18I GGWCC 2 cut(s) 178, 585
BmgT120I GGNCC 2 cut(s) 178, 585
BmiI GGNNCC 3 cut(s) 207, 531, 587
BmrFI CCNGG 1 cut(s) 565
BmsI GCATC 2 cut(s) 306, 958
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 4 cut(s) 301, 307, 417, 586
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 1446
BsaI GGTCTC 2 cut(s) 29, 565
BsaJI CCNNGG 3 cut(s) 410, 1245, 1343
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 6 cut(s) 299, 305, 329, 335, 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 293, 440, 570
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 1 cut(s) 494
Bse21I CCTNAGG 2 cut(s) 40, 465
Bse3DI GCAATG 1 cut(s) 1182
Bse8I GATNNNNATC 1 cut(s) 1446
BseBI CCWGG 1 cut(s) 565
BseDI CCNNGG 3 cut(s) 410, 1245, 1343
BseGI GGATG 3 cut(s) 128, 1159, 1621
BseJI GATNNNNATC 1 cut(s) 1446
BseLI CCNNNNNNNGG 3 cut(s) 293, 440, 570
BseMI GCAATG 1 cut(s) 1182
BseMII CTCAG 2 cut(s) 75, 456
BseNI ACTGG 1 cut(s) 494
BsePI GCGCGC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 67, 342
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 2 cut(s) 943, 1446
Bsh1236I CGCG 2 cut(s) 21, 384
BshFI GGCC 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 4 cut(s) 128, 130, 239, 571
BslI CCNNNNNNNGG 3 cut(s) 293, 440, 570
BsmAI GTCTC 3 cut(s) 29, 565, 864
BsmBI CGTCTC 1 cut(s) 864
BsmFI GGGAC 4 cut(s) 128, 130, 239, 571
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 2 cut(s) 29, 565
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 6 cut(s) 125, 205, 529, 547, 1447, 1452
Bsp19I CCATGG 1 cut(s) 1245
BspACI CCGC 9 cut(s) 138, 238, 328, 589, 643, 754, 916, 955, 1491
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 74, 457
BspFNI CGCG 2 cut(s) 21, 384
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 3 cut(s) 207, 531, 587
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 5 cut(s) 200, 213, 524, 537, 1455
BspQI GCTCTTC 2 cut(s) 2, 1348
BspTNI GGTCTC 2 cut(s) 29, 565
BsrBI CCGCTC 2 cut(s) 916, 1491
BsrDI GCAATG 1 cut(s) 1182
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 3 cut(s) 410, 1245, 1343
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 6 cut(s) 125, 205, 529, 547, 1447, 1452
BssT1I CCWWGG 1 cut(s) 1245
Bst2UI CCWGG 1 cut(s) 565
Bst4CI ACNGT 1 cut(s) 1508
Bst6I CTCTTC 9 cut(s) 2, 695, 821, 1008, 1062, 1197, 1348, 1493, 1568
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 40, 61, 465, 551, 1112
BstDSI CCRYGG 2 cut(s) 410, 1245
BstF5I GGATG 3 cut(s) 128, 1159, 1621
BstFNI CGCG 2 cut(s) 21, 384
BstHHI GCGC 3 cut(s) 21, 384, 386
BstKTI GATC 6 cut(s) 128, 208, 532, 550, 1450, 1455
BstMAI GTCTC 3 cut(s) 29, 565, 864
BstMBI GATC 6 cut(s) 125, 205, 529, 547, 1447, 1452
BstMWI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1181, 1303
BstNI CCWGG 1 cut(s) 565
BstSCI CCNGG 1 cut(s) 563
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 2 cut(s) 21, 384
BstV1I GCAGC 2 cut(s) 67, 342
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 2 cut(s) 205, 529
BstYI RGATCY 2 cut(s) 205, 529
Bsu36I CCTNAGG 2 cut(s) 40, 465
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 410, 1245
BtsCI GGATG 3 cut(s) 128, 1159, 1621
BtsI GCAGTG 2 cut(s) 159, 926
BtsIMutI CAGTG 2 cut(s) 159, 926
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 931
CfoI GCGC 3 cut(s) 21, 384, 386
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 178, 585
CseI GACGC 1 cut(s) 10
Csp6I GTAC 6 cut(s) 106, 284, 887, 1365, 1611, 1619
CspAI ACCGGT 1 cut(s) 814
CviAII CATG 9 cut(s) 439, 536, 598, 685, 932, 958, 1246, 1298, 1607
CviQI GTAC 6 cut(s) 106, 284, 887, 1365, 1611, 1619
DdeI CTNAG 5 cut(s) 40, 61, 465, 551, 1112
DpnI GATC 6 cut(s) 127, 207, 531, 549, 1449, 1454
DpnII GATC 6 cut(s) 125, 205, 529, 547, 1447, 1452
DrdI GACNNNNNNGTC 2 cut(s) 299, 680
DseDI GACNNNNNNGTC 2 cut(s) 299, 680
Eam1104I CTCTTC 9 cut(s) 2, 695, 821, 1008, 1062, 1197, 1348, 1493, 1568
EarI CTCTTC 9 cut(s) 2, 695, 821, 1008, 1062, 1197, 1348, 1493, 1568
Eco130I CCWWGG 1 cut(s) 1245
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 2 cut(s) 29, 565
Eco47I GGWCC 2 cut(s) 178, 585
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 2 cut(s) 40, 465
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 563
EcoT14I CCWWGG 1 cut(s) 1245
ErhI CCWWGG 1 cut(s) 1245
Esp3I CGTCTC 1 cut(s) 864
FaeI CATG 9 cut(s) 442, 539, 601, 688, 935, 961, 1249, 1301, 1610
FalI AAGNNNNNCTT 2 cut(s) 1206, 1238
FaqI GGGAC 4 cut(s) 128, 130, 239, 571
FatI CATG 9 cut(s) 438, 535, 597, 684, 931, 957, 1245, 1297, 1606
FauI CCCGC 1 cut(s) 596
Fnu4HI GCNGC 5 cut(s) 81, 139, 328, 331, 917
FokI GGATG 3 cut(s) 115, 1166, 1608
Fsp4HI GCNGC 5 cut(s) 81, 139, 328, 331, 917
FspBI CTAG 1 cut(s) 1368
GlaI GCGC 3 cut(s) 20, 383, 385
GluI GCNGC 5 cut(s) 81, 139, 328, 331, 917
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 4 cut(s) 301, 307, 417, 586
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 815
HgaI GACGC 1 cut(s) 10
HhaI GCGC 3 cut(s) 21, 384, 386
Hin1II CATG 9 cut(s) 442, 539, 601, 688, 935, 961, 1249, 1301, 1610
Hin6I GCGC 3 cut(s) 19, 382, 384
HinP1I GCGC 3 cut(s) 19, 382, 384
HindIII AAGCTT 1 cut(s) 1109
HinfI GANTC 3 cut(s) 928, 1226, 1406
HpaII CCGG 1 cut(s) 815
HphI GGTGA 5 cut(s) 16, 586, 1136, 1223, 1279
Hpy166II GTNNAC 3 cut(s) 424, 807, 887
Hpy188I TCNGA 5 cut(s) 64, 292, 352, 1101, 1452
Hpy188III TCNNGA 7 cut(s) 434, 449, 464, 932, 1169, 1223, 1262
Hpy8I GTNNAC 3 cut(s) 424, 807, 887
HpyAV CCTTC 9 cut(s) 595, 616, 772, 892, 1322, 1396, 1459, 1542, 1558
HpyCH4III ACNGT 1 cut(s) 1508
HpyCH4IV ACGT 2 cut(s) 104, 1381
HpyCH4V TGCA 5 cut(s) 688, 894, 924, 965, 1427
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1181, 1303
HpyF3I CTNAG 5 cut(s) 40, 61, 465, 551, 1112
HpySE526I ACGT 2 cut(s) 104, 1381
Hsp92II CATG 9 cut(s) 442, 539, 601, 688, 935, 961, 1249, 1301, 1610
HspAI GCGC 3 cut(s) 19, 382, 384
Kzo9I GATC 6 cut(s) 125, 205, 529, 547, 1447, 1452
LguI GCTCTTC 2 cut(s) 2, 1348
LmnI GCTCC 4 cut(s) 326, 796, 1294, 1488
Lsp1109I GCAGC 2 cut(s) 67, 342
LweI GCATC 2 cut(s) 306, 958
MaeI CTAG 1 cut(s) 1368
MaeII ACGT 2 cut(s) 104, 1381
MaeIII GTNAC 3 cut(s) 839, 1502, 1553
MalI GATC 6 cut(s) 127, 207, 531, 549, 1449, 1454
MbiI CCGCTC 2 cut(s) 916, 1491
MboI GATC 6 cut(s) 125, 205, 529, 547, 1447, 1452
MflI RGATCY 2 cut(s) 205, 529
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 5 cut(s) 55, 167, 415, 476, 1596
MmeI TCCRAC 3 cut(s) 205, 963, 1030
MroXI GAANNNNTTC 1 cut(s) 1218
MseI TTAA 3 cut(s) 971, 1089, 1599
MslI CAYNNNNRTG 3 cut(s) 133, 596, 689
MspI CCGG 1 cut(s) 815
MspR9I CCNGG 1 cut(s) 565
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 1 cut(s) 565
MvnI CGCG 2 cut(s) 21, 384
MwoI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1181, 1303
NcoI CCATGG 1 cut(s) 1245
NdeII GATC 6 cut(s) 125, 205, 529, 547, 1447, 1452
NlaIII CATG 9 cut(s) 442, 539, 601, 688, 935, 961, 1249, 1301, 1610
NlaIV GGNNCC 3 cut(s) 207, 531, 587
NmuCI GTSAC 1 cut(s) 1553
PagI TCATGA 1 cut(s) 931
PauI GCGCGC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 2, 1348
PctI GAATGC 1 cut(s) 1279
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 3 cut(s) 928, 1226, 1406
PfoI TCCNGGA 1 cut(s) 563
PinAI ACCGGT 1 cut(s) 814
PkrI GCNGC 5 cut(s) 82, 140, 329, 332, 918
Ppu21I YACGTR 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 1599
Psp6I CCWGG 1 cut(s) 563
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 1 cut(s) 563
PspN4I GGNNCC 3 cut(s) 207, 531, 587
PspPI GGNCC 2 cut(s) 178, 585
PsuI RGATCY 2 cut(s) 205, 529
PteI GCGCGC 1 cut(s) 382
RsaI GTAC 6 cut(s) 107, 285, 888, 1366, 1612, 1620
RsaNI GTAC 6 cut(s) 106, 284, 887, 1365, 1611, 1619
RseI CAYNNNNRTG 3 cut(s) 133, 596, 689
SapI GCTCTTC 2 cut(s) 2, 1348
SaqAI TTAA 3 cut(s) 971, 1089, 1599
SatI GCNGC 5 cut(s) 81, 139, 328, 331, 917
Sau3AI GATC 6 cut(s) 125, 205, 529, 547, 1447, 1452
Sau96I GGNCC 2 cut(s) 178, 585
ScaI AGTACT 1 cut(s) 1366
ScrFI CCNGG 1 cut(s) 565
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 2 cut(s) 306, 958
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 2 cut(s) 178, 585
SmiMI CAYNNNNRTG 3 cut(s) 133, 596, 689
Sse9I AATT 5 cut(s) 55, 167, 415, 476, 1596
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 9 cut(s) 138, 238, 328, 589, 643, 754, 916, 955, 1491
SspI AATATT 1 cut(s) 1233
SspMI CTAG 1 cut(s) 1368
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 563
StyI CCWWGG 1 cut(s) 1245
TaaI ACNGT 1 cut(s) 1508
TaiI ACGT 2 cut(s) 107, 1384
TaqI TCGA 4 cut(s) 48, 279, 450, 672
TasI AATT 5 cut(s) 55, 167, 415, 476, 1596
TatI WGTACW 2 cut(s) 886, 1364
TauI GCSGC 3 cut(s) 141, 330, 919
TfiI GAWTC 3 cut(s) 928, 1226, 1406
Tru1I TTAA 3 cut(s) 971, 1089, 1599
Tru9I TTAA 3 cut(s) 971, 1089, 1599
TscAI CASTG 2 cut(s) 166, 926
TseFI GTSAC 1 cut(s) 1553
TseI GCWGC 2 cut(s) 80, 330
Tsp45I GTSAC 1 cut(s) 1553
TspDTI ATGAA 5 cut(s) 614, 1023, 1341, 1415, 1617
TspRI CASTG 2 cut(s) 166, 926
VpaK11BI GGWCC 2 cut(s) 178, 585
VspI ATTAAT 1 cut(s) 1599
XapI RAATTY 2 cut(s) 167, 415
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 1 cut(s) 1368
ZrmI AGTACT 1 cut(s) 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.