Rh7BG190200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002151
Physical Location & Seq
Forward (+)
15370028 .. 15370621
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG190200.1

Sequence Viewer

Length: 528 bp
ATGGTGGCGAGGCGAAAGACGATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCACGGCGACCAGTAGTCAAGAGGTAAACAATGCTGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACACCAATAAGAATGGAGAAGATAGGAAACCGAGGAGGAGAAGAGCCAAGAGTACTAGAAATAACGAACATGATGGTTCAAATATGAAGGAATCCAAACCTGATTGTAACGCAGAAAAAGGATATGATGAGGATCAGATCAAGAAAATGAAGGGTGGAGGGAGGAAAGAGAGGAGCGGTAAGAAGAGTAACGGTAAAGGAGATATTGAGCAGAAGAAAATGAGAAGTGGAGGAAGGAGGGAAGAGAAGAAGGCTAAGAATAGAAATGGTGGAGAAAGAAGAATTAATGAGCATGGTAAAGGAGATGAAAATTATACGGAGGGGAATATGAAGAAAGAGGCCGCCAAAAAACAAATCGAAGACCTACTGCGCACATATACATACAACGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.0

Weight (kDa)

9.5

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 506
AccBSI CCGCTC 1 cut(s) 312
AciI CCGC 2 cut(s) 312, 477
AclWI GGATC 1 cut(s) 276
AfaI GTAC 1 cut(s) 190
AgsI TTSAA 3 cut(s) 50, 65, 216
AhdI GACNNNNNGTC 1 cut(s) 81
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
AlwI GGATC 1 cut(s) 276
AoxI GGCC 1 cut(s) 474
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 501
BccI CCATC 2 cut(s) 16, 203
BceAI ACGGC 1 cut(s) 87
BfaI CTAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
BmcAI AGTACT 1 cut(s) 190
BmeRI GACNNNNNGTC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 69, 167
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 69, 167
BseJI GATNNNNATC 1 cut(s) 267
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 3 cut(s) 184, 187, 322
BshFI GGCC 1 cut(s) 476
BsnI GGCC 1 cut(s) 476
Bsp143I GATC 2 cut(s) 268, 273
BspACI CCGC 2 cut(s) 312, 477
BspANI GGCC 1 cut(s) 476
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 312
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 69, 167
BssMI GATC 2 cut(s) 268, 273
Bst4CI ACNGT 1 cut(s) 329
Bst6I CTCTTC 4 cut(s) 21, 172, 314, 372
BstDEI CTNAG 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 2 cut(s) 271, 276
BstMBI GATC 2 cut(s) 268, 273
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 501
BsuRI GGCC 1 cut(s) 476
BtgI CCRYGG 1 cut(s) 69
CfoI GCGC 1 cut(s) 507
Csp6I GTAC 1 cut(s) 189
CviAII CATG 3 cut(s) 122, 206, 428
CviJI RGCY 5 cut(s) 113, 130, 182, 389, 476
CviKI_1 RGCY 5 cut(s) 113, 130, 182, 389, 476
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 390
DpnI GATC 2 cut(s) 270, 275
DpnII GATC 2 cut(s) 268, 273
DriI GACNNNNNGTC 1 cut(s) 81
Eam1104I CTCTTC 4 cut(s) 21, 172, 314, 372
Eam1105I GACNNNNNGTC 1 cut(s) 81
EarI CTCTTC 4 cut(s) 21, 172, 314, 372
FaeI CATG 3 cut(s) 125, 209, 431
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 3 cut(s) 121, 205, 427
Fnu4HI GCNGC 1 cut(s) 477
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 1 cut(s) 192
FspI TGCGCA 1 cut(s) 506
GlaI GCGC 1 cut(s) 506
GluI GCNGC 1 cut(s) 477
HaeIII GGCC 1 cut(s) 476
HhaI GCGC 1 cut(s) 507
Hin1II CATG 3 cut(s) 125, 209, 431
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HinfI GANTC 2 cut(s) 50, 227
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 273
Hpy188III TCNNGA 3 cut(s) 47, 86, 277
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 4 cut(s) 217, 280, 363, 379
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 522
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 3 cut(s) 125, 209, 431
HspAI GCGC 1 cut(s) 505
Kzo9I GATC 2 cut(s) 268, 273
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 2 cut(s) 118, 309
LpnPI CCDG 2 cut(s) 91, 249
MaeI CTAG 1 cut(s) 192
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 2 cut(s) 242, 323
MalI GATC 2 cut(s) 270, 275
MbiI CCGCTC 1 cut(s) 312
MboI GATC 2 cut(s) 268, 273
MluCI AATT 2 cut(s) 417, 445
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 1 cut(s) 420
MwoI GCNNNNNNNGC 1 cut(s) 127
NdeII GATC 2 cut(s) 268, 273
NlaIII CATG 3 cut(s) 125, 209, 431
NsbI TGCGCA 1 cut(s) 506
PciSI GCTCTTC 1 cut(s) 172
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 50, 227
PkrI GCNGC 1 cut(s) 478
PshBI ATTAAT 1 cut(s) 420
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 2 cut(s) 268, 273
ScaI AGTACT 1 cut(s) 190
SetI ASST 7 cut(s) 33, 93, 111, 132, 238, 501, 525
Sse9I AATT 2 cut(s) 417, 445
SsiI CCGC 2 cut(s) 312, 477
SspI AATATT 1 cut(s) 57
SspMI CTAG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 1 cut(s) 525
TaqI TCGA 1 cut(s) 492
TasI AATT 2 cut(s) 417, 445
TatI WGTACW 1 cut(s) 188
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 2 cut(s) 50, 227
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TspDTI ATGAA 4 cut(s) 236, 299, 456, 479
TspGWI ACGGA 1 cut(s) 467
VspI ATTAAT 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.