RchiOBHm_Chr7g0200711

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002151
Physical Location & Seq
Forward (+)
18433792 .. 18435471
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17967

Sequence Viewer

Length: 1668 bp
ATGGTGAAGAGCACAGAGCGCGTCTGCCACTACGAGACCTTAGGCCTCGAACCAAATTGCTCAGAAAAAGAAATCAAGGCTGCTCACAGGAAACTAATCCTCACGTACCATTGGGACAAATGTAGATCATCCCAATGCGGCTTGTCCCAAGAAGAAGCCACTGCCAAATTTTTAGAGGTCCAACAAGCCTACGAAATCCTTATGGATCCCATAAAGCGAGAAACCTATAACGCCTACCGCCAGACCTACGCTGTCCCTGAAGTTTTCAACCCCGACCTCGAAGTACCCTTTGACAACATCGTCTTCAACGGCTACTCCAGCTCCAGCCGCAACTTCTACAATGCCTACTCTGACATTTTTCAAAGGATTTACGCCAACGAGCGCGCTTTTCAAAAGAAGAACGACCTGCCGTGGAATTCGGTTCACAAGCCTCCAGACATGGGCAATCTCGACACCCCTTATCCTGAGGTTGTTCAATTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCACATGATGAGTATGATCTAAGTCAGATCTCCCGCAAAGGGGTGAAGGAATGGTCCCGCATAAACATGAAGGCGAGGAAGAAAGCAAAGAAGGAATACAACAATAAGGTGAGGAGTTTGGCACAAACTGCGAAAAGGCTCGACAGGAGGGTCATGCAGATGGTAGCGAAGAGGGAGGTGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGGAGGAAGCGGTTGAAGAAACAGAAGTTGGTGAAGGCTATAGAGTATGAGGAGCAGGAGTGGACGAAACCAGTTGAGAGGAAGAGAAAATATAGTAACAAGGAGGAGGAGGAGGAGGAAAAAGAGAGAGACGAATGGGAGTGTGTAGTTTGCAGGAAGGTGTATAGGAGTGAGCGGCAGTGCAGGAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAAAGTTAATGGAGTTGTTGGAGGAAAAACCAGATGAAGAAGAGGTTTTGGAGGAAGCAAAAAGGAATGAGGTGGTTGGAGGGAGTGATGGCGAAGAGGAGTTTGTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTGGAGGAGGATGAGATGGGTGTTCTTGAAGCAATGGTGGCAAGGCGAAAGACGATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCATGGCGAGTAGTAGTCAAGAGGTGAAGAATGCAGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACGCCAATAAGAATGAAGGAGAAAGGAAACCAAGGAGAAGAAGAGCCAAGAGTACTAGAACTGACGAACGTGATGGTTCAAATAATATGAAGGAATCCAAACCTGATTTTAGTGCAGAAAAAGGATATGATGAGGATCAGATCAATAAAAGGAAGGGTGGAGAGAGGAAAGAGAGGAGCGGTAAGAAGAGTAACGGTAAAGGAGATATTGAGCAGAAGAAAATGAGGAGTGGAGGAAGGAGTGAAGAGAAGAAGGGTAAGAAGAGAAATGGTGGAGAAAGAAGAATTAATGAACATGGTACATCCTATTTTTCTGCTGTGAATGAGAGTTATCTGAACATGTTACATCTGATATTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

555

Amino Acids

65.57

Weight (kDa)

6.23

Isoelectric Point (pI)

58.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 77 4.2e-17 DnaJ domain
ZUO1-like_ZHD PF21884 119 - 228 8.6e-17 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 294 - 318 9.2e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 299, 680
Acc36I ACCTGC 1 cut(s) 414
AccBSI CCGCTC 2 cut(s) 919, 1485
AccII CGCG 2 cut(s) 21, 384
AciI CCGC 9 cut(s) 138, 238, 328, 565, 589, 754, 919, 958, 1485
AclWI GGATC 5 cut(s) 200, 213, 524, 537, 1449
AcsI RAATTY 2 cut(s) 167, 415
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 4 cut(s) 107, 285, 1360, 1606
AfiI CCNNNNNNNGG 3 cut(s) 440, 570, 571
AflIII ACRYGT 1 cut(s) 1644
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 3 cut(s) 321, 1105, 1300
AluI AGCT 3 cut(s) 321, 1105, 1300
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 29, 867
AlwI GGATC 5 cut(s) 200, 213, 524, 537, 1449
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 167, 415
AseI ATTAAT 1 cut(s) 1593
Asp700I GAANNNNTTC 1 cut(s) 1212
AspLEI GCGC 3 cut(s) 21, 384, 386
AspS9I GGNCC 2 cut(s) 178, 585
AsuHPI GGTGA 7 cut(s) 16, 586, 652, 787, 1130, 1217, 1273
AvaII GGWCC 2 cut(s) 178, 585
AxyI CCTNAGG 2 cut(s) 40, 465
BamHI GGATCC 2 cut(s) 205, 529
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 67
BccI CCATC 6 cut(s) 685, 1049, 1070, 1147, 1186, 1373
BceAI ACGGC 2 cut(s) 325, 394
BcoDI GTCTC 2 cut(s) 29, 867
BfaI CTAG 1 cut(s) 1362
BfmI CTRYAG 1 cut(s) 783
BfuAI ACCTGC 1 cut(s) 414
BglII AGATCT 1 cut(s) 558
BisI GCNGC 4 cut(s) 81, 139, 328, 920
BlsI GCNGC 4 cut(s) 82, 140, 329, 921
BmcAI AGTACT 1 cut(s) 1360
Bme18I GGWCC 2 cut(s) 178, 585
BmgT120I GGNCC 2 cut(s) 178, 585
BmiI GGNNCC 3 cut(s) 207, 531, 587
BmsI GCATC 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 3 cut(s) 301, 307, 417
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 1440
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 410, 1239, 1337
BsaXI ACNNNNNCTCC 6 cut(s) 299, 305, 329, 335, 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 570, 571
Bse1I ACTGG 2 cut(s) 494, 815
Bse21I CCTNAGG 2 cut(s) 40, 465
Bse3DI GCAATG 1 cut(s) 1176
Bse8I GATNNNNATC 1 cut(s) 1440
BseDI CCNNGG 3 cut(s) 410, 1239, 1337
BseGI GGATG 3 cut(s) 128, 1153, 1607
BseJI GATNNNNATC 1 cut(s) 1440
BseLI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BseMI GCAATG 1 cut(s) 1176
BseMII CTCAG 2 cut(s) 75, 456
BseNI ACTGG 2 cut(s) 494, 815
BsePI GCGCGC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 2 cut(s) 946, 1440
Bsh1236I CGCG 2 cut(s) 21, 384
BshFI GGCC 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 14
BslFI GGGAC 4 cut(s) 128, 130, 239, 571
BslI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BsmAI GTCTC 2 cut(s) 29, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 4 cut(s) 128, 130, 239, 571
BsmI GAATGC 1 cut(s) 1273
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 7 cut(s) 125, 205, 529, 547, 558, 1441, 1446
Bsp19I CCATGG 1 cut(s) 1239
BspACI CCGC 9 cut(s) 138, 238, 328, 565, 589, 754, 919, 958, 1485
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 74, 457
BspFNI CGCG 2 cut(s) 21, 384
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 3 cut(s) 207, 531, 587
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 5 cut(s) 200, 213, 524, 537, 1449
BspQI GCTCTTC 2 cut(s) 2, 1342
BspTNI GGTCTC 1 cut(s) 29
BsrBI CCGCTC 2 cut(s) 919, 1485
BsrDI GCAATG 1 cut(s) 1176
BsrI ACTGG 2 cut(s) 494, 815
BssECI CCNNGG 3 cut(s) 410, 1239, 1337
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 7 cut(s) 125, 205, 529, 547, 558, 1441, 1446
BssT1I CCWWGG 2 cut(s) 1239, 1337
Bst4CI ACNGT 1 cut(s) 1502
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 40, 61, 465, 551, 1106
BstDSI CCRYGG 2 cut(s) 410, 1239
BstF5I GGATG 3 cut(s) 128, 1153, 1607
BstFNI CGCG 2 cut(s) 21, 384
BstHHI GCGC 3 cut(s) 21, 384, 386
BstKTI GATC 7 cut(s) 128, 208, 532, 550, 561, 1444, 1449
BstMAI GTCTC 2 cut(s) 29, 867
BstMBI GATC 7 cut(s) 125, 205, 529, 547, 558, 1441, 1446
BstMWI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1175, 1297
BstNSI RCATGY 1 cut(s) 1648
BstSFI CTRYAG 1 cut(s) 783
BstUI CGCG 2 cut(s) 21, 384
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 3 cut(s) 205, 529, 558
BstYI RGATCY 3 cut(s) 205, 529, 558
Bsu36I CCTNAGG 2 cut(s) 40, 465
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 410, 1239
BtsCI GGATG 3 cut(s) 128, 1153, 1607
BtsI GCAGTG 2 cut(s) 159, 929
BtsIMutI CAGTG 2 cut(s) 159, 929
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 934
CfoI GCGC 3 cut(s) 21, 384, 386
Cfr13I GGNCC 2 cut(s) 178, 585
CseI GACGC 1 cut(s) 10
Csp6I GTAC 4 cut(s) 106, 284, 1359, 1605
CviQI GTAC 4 cut(s) 106, 284, 1359, 1605
DdeI CTNAG 5 cut(s) 40, 61, 465, 551, 1106
DpnI GATC 7 cut(s) 127, 207, 531, 549, 560, 1443, 1448
DpnII GATC 7 cut(s) 125, 205, 529, 547, 558, 1441, 1446
DrdI GACNNNNNNGTC 2 cut(s) 299, 680
DseDI GACNNNNNNGTC 2 cut(s) 299, 680
Eco130I CCWWGG 2 cut(s) 1239, 1337
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 178, 585
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 2 cut(s) 40, 465
EcoRI GAATTC 1 cut(s) 415
EcoT14I CCWWGG 2 cut(s) 1239, 1337
ErhI CCWWGG 2 cut(s) 1239, 1337
Esp3I CGTCTC 1 cut(s) 867
FalI AAGNNNNNCTT 2 cut(s) 1200, 1232
FaqI GGGAC 4 cut(s) 128, 130, 239, 571
FauI CCCGC 2 cut(s) 572, 596
Fnu4HI GCNGC 4 cut(s) 81, 139, 328, 920
FokI GGATG 3 cut(s) 115, 1160, 1594
Fsp4HI GCNGC 4 cut(s) 81, 139, 328, 920
FspBI CTAG 1 cut(s) 1362
GlaI GCGC 3 cut(s) 20, 383, 385
GluI GCNGC 4 cut(s) 81, 139, 328, 920
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 3 cut(s) 301, 307, 417
HaeIII GGCC 1 cut(s) 45
HgaI GACGC 1 cut(s) 10
HhaI GCGC 3 cut(s) 21, 384, 386
Hin6I GCGC 3 cut(s) 19, 382, 384
HinP1I GCGC 3 cut(s) 19, 382, 384
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 3 cut(s) 931, 1220, 1400
HphI GGTGA 7 cut(s) 16, 586, 652, 787, 1130, 1217, 1273
Hpy166II GTNNAC 2 cut(s) 424, 807
Hpy188I TCNGA 7 cut(s) 64, 352, 558, 1095, 1446, 1641, 1656
Hpy188III TCNNGA 7 cut(s) 434, 449, 464, 935, 1163, 1217, 1256
Hpy8I GTNNAC 2 cut(s) 424, 807
HpyCH4III ACNGT 1 cut(s) 1502
HpyCH4IV ACGT 2 cut(s) 104, 1375
HpyCH4V TGCA 6 cut(s) 688, 897, 927, 968, 1271, 1421
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1175, 1297
HpyF3I CTNAG 5 cut(s) 40, 61, 465, 551, 1106
HpySE526I ACGT 2 cut(s) 104, 1375
HspAI GCGC 3 cut(s) 19, 382, 384
Kzo9I GATC 7 cut(s) 125, 205, 529, 547, 558, 1441, 1446
LguI GCTCTTC 2 cut(s) 2, 1342
LmnI GCTCC 4 cut(s) 326, 796, 1288, 1482
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 961
MaeI CTAG 1 cut(s) 1362
MaeII ACGT 2 cut(s) 104, 1375
MaeIII GTNAC 3 cut(s) 839, 1496, 1647
MalI GATC 7 cut(s) 127, 207, 531, 549, 560, 1443, 1448
MbiI CCGCTC 2 cut(s) 919, 1485
MboI GATC 7 cut(s) 125, 205, 529, 547, 558, 1441, 1446
MflI RGATCY 3 cut(s) 205, 529, 558
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 5 cut(s) 55, 167, 415, 476, 1590
MmeI TCCRAC 3 cut(s) 205, 966, 1024
MroXI GAANNNNTTC 1 cut(s) 1212
MseI TTAA 3 cut(s) 974, 1083, 1593
MslI CAYNNNNRTG 3 cut(s) 133, 596, 689
Mva1269I GAATGC 1 cut(s) 1273
MvnI CGCG 2 cut(s) 21, 384
MwoI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 659, 1175, 1297
NcoI CCATGG 1 cut(s) 1239
NdeII GATC 7 cut(s) 125, 205, 529, 547, 558, 1441, 1446
NlaIV GGNNCC 3 cut(s) 207, 531, 587
NspI RCATGY 1 cut(s) 1648
PagI TCATGA 1 cut(s) 934
PauI GCGCGC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 45
PciI ACATGT 1 cut(s) 1644
PciSI GCTCTTC 2 cut(s) 2, 1342
PctI GAATGC 1 cut(s) 1273
PdmI GAANNNNTTC 1 cut(s) 1212
PfeI GAWTC 3 cut(s) 931, 1220, 1400
PkrI GCNGC 4 cut(s) 82, 140, 329, 921
Ppu21I YACGTR 1 cut(s) 105
PscI ACATGT 1 cut(s) 1644
PshBI ATTAAT 1 cut(s) 1593
PspFI CCCAGC 1 cut(s) 522
PspN4I GGNNCC 3 cut(s) 207, 531, 587
PspPI GGNCC 2 cut(s) 178, 585
PsuI RGATCY 3 cut(s) 205, 529, 558
PteI GCGCGC 1 cut(s) 382
RsaI GTAC 4 cut(s) 107, 285, 1360, 1606
RsaNI GTAC 4 cut(s) 106, 284, 1359, 1605
RseI CAYNNNNRTG 3 cut(s) 133, 596, 689
SapI GCTCTTC 2 cut(s) 2, 1342
SaqAI TTAA 3 cut(s) 974, 1083, 1593
SatI GCNGC 4 cut(s) 81, 139, 328, 920
Sau3AI GATC 7 cut(s) 125, 205, 529, 547, 558, 1441, 1446
Sau96I GGNCC 2 cut(s) 178, 585
ScaI AGTACT 1 cut(s) 1360
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 961
SfcI CTRYAG 1 cut(s) 783
SinI GGWCC 2 cut(s) 178, 585
SmiMI CAYNNNNRTG 3 cut(s) 133, 596, 689
Sse9I AATT 5 cut(s) 55, 167, 415, 476, 1590
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 9 cut(s) 138, 238, 328, 565, 589, 754, 919, 958, 1485
SspI AATATT 1 cut(s) 1227
SspMI CTAG 1 cut(s) 1362
StuI AGGCCT 1 cut(s) 45
StyI CCWWGG 2 cut(s) 1239, 1337
TaaI ACNGT 1 cut(s) 1502
TaiI ACGT 2 cut(s) 107, 1378
TaqI TCGA 4 cut(s) 48, 279, 450, 672
TasI AATT 5 cut(s) 55, 167, 415, 476, 1590
TatI WGTACW 1 cut(s) 1358
TauI GCSGC 3 cut(s) 141, 330, 922
TfiI GAWTC 3 cut(s) 931, 1220, 1400
Tru1I TTAA 3 cut(s) 974, 1083, 1593
Tru9I TTAA 3 cut(s) 974, 1083, 1593
TscAI CASTG 2 cut(s) 166, 929
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 6 cut(s) 614, 1017, 1335, 1409, 1611, 1651
TspRI CASTG 2 cut(s) 166, 929
VpaK11BI GGWCC 2 cut(s) 178, 585
VspI ATTAAT 1 cut(s) 1593
XapI RAATTY 2 cut(s) 167, 415
XceI RCATGY 1 cut(s) 1648
XmnI GAANNNNTTC 1 cut(s) 1212
XspI CTAG 1 cut(s) 1362
ZrmI AGTACT 1 cut(s) 1360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.