Rroxscaffold_3G00255910

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002151
Physical Location & Seq
Reverse (-)
50363556 .. 50365009
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255910.1

Sequence Viewer

Length: 1368 bp
ATGGTGAAGAGCACCGAGCGCATCTGCTACTACAAGACCTTAGGCCTCGAACCCAACTGCTCAATGGATGATGTCAGACATGCTTACCATGAACTTTCCATAATATACCACCCGGACAAATACAAGTCCAGTTGCGGCATGACGGAAGACGAAGCCGCCGCCAAATTCCTAGAGATCAAAGACGCCTACAACATTCTCAAAGAACCCGATGAGCGAGCCTTCTACGACTCCTACCGCCAGACCTACGCTGTCCCAGAGGCCTTCAACCCCAACCTCAAAGCCGCCTTCGACAACATCAACTTCAATGGCTACTCCGATTCCAACCGCGGTTTCTACAAGGTCTATTCTGACGTTTTCAACAGGATTTACGCCAGCGAGCGTGCTTTTCAGGAAAAGAATGACCTACCGTGGGATTCGGTTCACAAGCCTCCGGACATGGGGAATCTCGAGAGCCCGTATCCCGAGGTTGTTAAGTTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGACCCGTATGATGAGTATGATCTCAGTAGGGTCATCCACAGGGGGTATAAGCGGTGGTCGAAAAAGAATATGAAGGCGAGGAAGAAGGCTAAGAAGGAGTACAACAACAAGGTGCGGGATTTGGCACATAATGCGAAGAGGCTGGACAAGAGGGTCATGCAGATGATGGCGAAGAGGAAGGAGGAAAGGAAGAGGGAGAAGGAGAAGGACAGGGAGAGGAGGAAGCGGTTGAAGAAGGAGAAGCTGGAGAAGGCCGCTATGGAGTATGAGGAGCCGGAGTGGACCAAAGTGGTTGAGAGGAAGAGAAAATATGGTGATCCTGAGGATGAGAAGGAAAAGGAGAGAGAGGAATGGGAGTGCGTGGTTTGTAGAAAGGGGTTTAGGAGTGAAAAGCAGTGTCTGAATCACGAGCAGTCGAAGAAGCACCTCCGCATGGTTATGGAGTTGATGAAGTTGAAACATTATGAAGAGCTTAATGAAGAAGAGGTTTTAATGGAAGAAAAAAGGAATGAGGTGGTGGATGATGGGGTTGGAGGGAGTGATAAGGAGGAGGAGGATGAGGATGAGATGAATGTTCTTGAAGCAATGGTGGCGAGGCGAAAGGCTGTGGAAAAGGTTTGTGACGATGTTCTTGAACCAATGTTTGAGGTCATGGCGACCAATACGCATGTGGAGAATGATGTTAATGAGGTGGCTATAGAGCATCATGATAAGCTAAAGAGCACGAATTATAAAACTGGAGGGAAGAAACCGAGGAGGAGGAGGAGGAGGAGTGTGGAGTGTACTAGAATTAACGAACACGATAATTCTCCTAATTCAAATATGAAGGGAAATCAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

455

Amino Acids

54.5

Weight (kDa)

6.92

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 76 2.1e-16 DnaJ domain
ZUO1-like_ZHD PF21884 111 - 227 2.1e-17 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 293 - 317 7.2e-07 Zinc-finger double-stranded RNA-binding
zf-met PF12874 293 - 317 1.7e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1257
AasI GACNNNNNNGTC 1 cut(s) 677
AccII CGCG 1 cut(s) 327
AccIII TCCGGA 1 cut(s) 430
AclWI GGATC 1 cut(s) 836
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 626, 1309
AfiI CCNNNNNNNGG 3 cut(s) 409, 437, 958
AgsI TTSAA 8 cut(s) 265, 304, 358, 757, 982, 1106, 1160, 1344
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 3 cut(s) 769, 997, 1240
AluI AGCT 3 cut(s) 769, 997, 1240
Alw21I GWGCWC 2 cut(s) 14, 1250
AlwI GGATC 1 cut(s) 836
AlwNI CAGNNNCTG 1 cut(s) 925
Ama87I CYCGRG 2 cut(s) 446, 461
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 3 cut(s) 43, 258, 777
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 526, 807
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 16, 851
AvaI CYCGRG 2 cut(s) 446, 461
AvaII GGWCC 2 cut(s) 526, 807
AxyI CCTNAGG 2 cut(s) 40, 846
BanII GRGCYC 1 cut(s) 455
BauI CACGAG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 14, 1250
BccI CCATC 2 cut(s) 685, 1043
BciVI GTATCC 1 cut(s) 468
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 2 cut(s) 170, 1311
BfmI CTRYAG 1 cut(s) 1221
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 5 cut(s) 136, 156, 159, 282, 780
BlsI GCNGC 5 cut(s) 137, 157, 160, 283, 781
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 526, 807
BmeT110I CYCGRG 2 cut(s) 446, 461
BmgT120I GGNCC 2 cut(s) 526, 807
BmiI GGNNCC 2 cut(s) 528, 798
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 30, 1237
BpiI GAAGAC 1 cut(s) 153
BpmI CTGGAG 2 cut(s) 791, 1284
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 4 cut(s) 325, 407, 462, 1277
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 6 cut(s) 515, 545, 788, 818, 1282, 1312
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 437, 958
Bse1I ACTGG 3 cut(s) 129, 491, 1267
Bse21I CCTNAGG 2 cut(s) 40, 846
Bse3DI GCAATG 1 cut(s) 1116
BseAI TCCGGA 1 cut(s) 430
BseDI CCNNGG 4 cut(s) 325, 407, 462, 1277
BseGI GGATG 6 cut(s) 73, 558, 856, 1051, 1087, 1093
BseLI CCNNNNNNNGG 3 cut(s) 409, 437, 958
BseMI GCAATG 1 cut(s) 1116
BseMII CTCAG 2 cut(s) 562, 837
BseNI ACTGG 3 cut(s) 129, 491, 1267
BseYI CCCAGC 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 3 cut(s) 45, 260, 779
BsiHKAI GWGCWC 2 cut(s) 14, 1250
BsiHKCI CYCGRG 2 cut(s) 446, 461
BsiSI CCGG 3 cut(s) 113, 431, 800
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 409, 437, 958
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 3 cut(s) 45, 260, 779
BsoBI CYCGRG 2 cut(s) 446, 461
Bsp1286I GDGCHC 3 cut(s) 14, 455, 1250
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 174, 544, 841
BspANI GGCC 3 cut(s) 45, 260, 779
BspCNI CTCAG 2 cut(s) 561, 838
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 1 cut(s) 327
BspHI TCATGA 1 cut(s) 1231
BspLI GGNNCC 2 cut(s) 528, 798
BspPI GGATC 1 cut(s) 836
BspQI GCTCTTC 2 cut(s) 2, 987
BsrDI GCAATG 1 cut(s) 1116
BsrI ACTGG 3 cut(s) 129, 491, 1267
BssECI CCNNGG 4 cut(s) 325, 407, 462, 1277
BssMI GATC 3 cut(s) 174, 544, 841
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 932
Bst2BI CACGAG 1 cut(s) 932
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 7 cut(s) 2, 656, 692, 710, 821, 987, 1002
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 4 cut(s) 216, 373, 377, 381
BstDEI CTNAG 4 cut(s) 40, 548, 615, 846
BstDSI CCRYGG 2 cut(s) 325, 407
BstF5I GGATG 6 cut(s) 73, 558, 856, 1051, 1087, 1093
BstFNI CGCG 1 cut(s) 327
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 177, 547, 844
BstMBI GATC 3 cut(s) 174, 544, 841
BstMWI GCNNNNNNNGC 3 cut(s) 18, 656, 1115
BstNSI RCATGY 2 cut(s) 83, 1196
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 1221
BstUI CGCG 1 cut(s) 327
BstV2I GAAGAC 1 cut(s) 153
Bsu36I CCTNAGG 2 cut(s) 40, 846
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 3 cut(s) 45, 260, 779
BtgI CCRYGG 2 cut(s) 325, 407
BtsCI GGATG 6 cut(s) 73, 558, 856, 1051, 1087, 1093
BtsI GCAGTG 1 cut(s) 926
BtsIMutI CAGTG 1 cut(s) 926
Cac8I GCNNGC 4 cut(s) 216, 373, 377, 381
CaiI CAGNNNCTG 1 cut(s) 925
CciI TCATGA 1 cut(s) 1231
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 526, 807
Cfr42I CCGCGG 1 cut(s) 328
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 625, 1308
CviAII CATG 9 cut(s) 80, 89, 139, 436, 682, 958, 1177, 1193, 1232
CviQI GTAC 2 cut(s) 625, 1308
DdeI CTNAG 4 cut(s) 40, 548, 615, 846
DpnI GATC 3 cut(s) 176, 546, 843
DpnII GATC 3 cut(s) 174, 544, 841
DrdI GACNNNNNNGTC 1 cut(s) 677
DseDI GACNNNNNNGTC 1 cut(s) 677
Eam1104I CTCTTC 7 cut(s) 2, 656, 692, 710, 821, 987, 1002
EarI CTCTTC 7 cut(s) 2, 656, 692, 710, 821, 987, 1002
Eco147I AGGCCT 2 cut(s) 45, 260
Eco24I GRGCYC 1 cut(s) 455
Eco47I GGWCC 2 cut(s) 526, 807
Eco81I CCTNAGG 2 cut(s) 40, 846
Eco88I CYCGRG 2 cut(s) 446, 461
EcoO109I RGGNCCY 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 455
FaeI CATG 9 cut(s) 83, 92, 142, 439, 685, 961, 1180, 1196, 1235
FaqI GGGAC 1 cut(s) 236
FatI CATG 9 cut(s) 79, 88, 138, 435, 681, 957, 1176, 1192, 1231
FauI CCCGC 1 cut(s) 633
Fnu4HI GCNGC 5 cut(s) 136, 156, 159, 282, 780
FokI GGATG 6 cut(s) 80, 545, 863, 1058, 1094, 1100
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 5 cut(s) 136, 156, 159, 282, 780
FspBI CTAG 2 cut(s) 170, 1311
GlaI GCGC 1 cut(s) 20
GluI GCNGC 5 cut(s) 136, 156, 159, 282, 780
GsaI CCCAGC 1 cut(s) 523
GsuI CTGGAG 2 cut(s) 791, 1284
HaeIII GGCC 3 cut(s) 45, 260, 779
HapII CCGG 3 cut(s) 113, 431, 800
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 9 cut(s) 83, 92, 142, 439, 685, 961, 1180, 1196, 1235
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 5 cut(s) 227, 317, 413, 442, 928
HpaII CCGG 3 cut(s) 113, 431, 800
HphI GGTGA 2 cut(s) 16, 851
Hpy166II GTNNAC 3 cut(s) 421, 807, 1308
Hpy188I TCNGA 5 cut(s) 77, 316, 349, 927, 1367
Hpy8I GTNNAC 3 cut(s) 421, 807, 1308
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 685
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 656, 1115
HpyF3I CTNAG 4 cut(s) 40, 548, 615, 846
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 9 cut(s) 83, 92, 142, 439, 685, 961, 1180, 1196, 1235
HspAI GCGC 1 cut(s) 19
Kpn2I TCCGGA 1 cut(s) 430
KspI CCGCGG 1 cut(s) 328
Kzo9I GATC 3 cut(s) 174, 544, 841
LguI GCTCTTC 2 cut(s) 2, 987
LmnI GCTCC 1 cut(s) 796
LweI GCATC 2 cut(s) 30, 1237
MaeI CTAG 2 cut(s) 170, 1311
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 1145
MalI GATC 3 cut(s) 176, 546, 843
MboI GATC 3 cut(s) 174, 544, 841
MhlI GDGCHC 3 cut(s) 14, 455, 1250
MluCI AATT 5 cut(s) 164, 1252, 1314, 1330, 1339
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 2 cut(s) 345, 1036
MroI TCCGGA 1 cut(s) 430
MseI TTAA 5 cut(s) 471, 999, 1016, 1209, 1317
MslI CAYNNNNRTG 2 cut(s) 686, 962
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 3 cut(s) 113, 431, 800
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 18, 656, 1115
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 174, 544, 841
NlaIII CATG 9 cut(s) 83, 92, 142, 439, 685, 961, 1180, 1196, 1235
NlaIV GGNNCC 2 cut(s) 528, 798
NmuCI GTSAC 1 cut(s) 1145
NspI RCATGY 2 cut(s) 83, 1196
PaeR7I CTCGAG 1 cut(s) 446
PagI TCATGA 1 cut(s) 1231
PceI AGGCCT 2 cut(s) 45, 260
PciSI GCTCTTC 2 cut(s) 2, 987
PfeI GAWTC 4 cut(s) 317, 413, 442, 928
PkrI GCNGC 5 cut(s) 137, 157, 160, 283, 781
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 526
PsiI TTATAA 1 cut(s) 1257
Psp5II RGGWCCY 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 519
PspN4I GGNNCC 2 cut(s) 528, 798
PspPI GGNCC 2 cut(s) 526, 807
PspPPI RGGWCCY 1 cut(s) 526
PstNI CAGNNNCTG 1 cut(s) 925
RsaI GTAC 2 cut(s) 626, 1309
RsaNI GTAC 2 cut(s) 625, 1308
RseI CAYNNNNRTG 2 cut(s) 686, 962
SacII CCGCGG 1 cut(s) 328
SapI GCTCTTC 2 cut(s) 2, 987
SaqAI TTAA 5 cut(s) 471, 999, 1016, 1209, 1317
SatI GCNGC 5 cut(s) 136, 156, 159, 282, 780
Sau3AI GATC 3 cut(s) 174, 544, 841
Sau96I GGNCC 2 cut(s) 526, 807
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 3 cut(s) 14, 455, 1250
SfaNI GCATC 2 cut(s) 30, 1237
SfcI CTRYAG 1 cut(s) 1221
Sfr274I CTCGAG 1 cut(s) 446
Sfr303I CCGCGG 1 cut(s) 328
SgrBI CCGCGG 1 cut(s) 328
SinI GGWCC 2 cut(s) 526, 807
SlaI CTCGAG 1 cut(s) 446
SmiMI CAYNNNNRTG 2 cut(s) 686, 962
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 5 cut(s) 164, 1252, 1314, 1330, 1339
SseBI AGGCCT 2 cut(s) 45, 260
SspMI CTAG 2 cut(s) 170, 1311
StuI AGGCCT 2 cut(s) 45, 260
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 354
TaqI TCGA 5 cut(s) 48, 288, 447, 584, 941
TasI AATT 5 cut(s) 164, 1252, 1314, 1330, 1339
TatI WGTACW 2 cut(s) 624, 1307
TauI GCSGC 5 cut(s) 138, 158, 161, 284, 782
TfiI GAWTC 4 cut(s) 317, 413, 442, 928
Tru1I TTAA 5 cut(s) 471, 999, 1016, 1209, 1317
Tru9I TTAA 5 cut(s) 471, 999, 1016, 1209, 1317
TscAI CASTG 1 cut(s) 926
TseFI GTSAC 1 cut(s) 1145
Tsp45I GTSAC 1 cut(s) 1145
TspDTI ATGAA 7 cut(s) 105, 611, 989, 1005, 1017, 1109, 1364
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 926
VpaK11BI GGWCC 2 cut(s) 526, 807
XapI RAATTY 1 cut(s) 164
XceI RCATGY 2 cut(s) 83, 1196
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 1192
XhoI CTCGAG 1 cut(s) 446
XspI CTAG 2 cut(s) 170, 1311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.