Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

15515681 .. 15517021

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG192000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGAGTGAGCCTTCTACGACTCCTACCGCCAGACCTACGCTGTGCCAGAGGCTTTCAACCCCGACCTCGAAGCCGCCTTCGACAACATTAATTTCAACGGCTACTCCGACTCCGGCCGCGGCTTTTATAAGGTCTACTCCGACGTTTTCGACAGGATTTACAGCAATGAGCGTGCTTTTCATGAAAAGAATGACCCGCCGTGGGGTTCTGTTCACAACCCTCCGCCCATGGGAAATCTGGACAGCCCGTATCCTGACTCCTGAGGTTGTTCAGTTTTATAACTACTGGCTCAACTTTAGTTCCATAATGGATTTTTGCTGGGAGGAACCGCATGATGAGTACGATTCTGAGTCAGGTCTCCCGCAGAAGAGTAAAGCTGTGGTCCGCCTAAACATGAAAGCTAGGAAGAAGGCCAAGAAGGAGTACAACAACAAGGTGCGGAGTTTGGCACACAATGCCAAGAGGCTTGACAGGAGGGTCATGCAGATGACGGCGAAGACGGAGGAGGAGAGAAAGAGGGAGATGGAAGAGGAGAGGGAGAGGAGGAAGCGGTTAAAGAAAGAGAAGTTGGAGAAGGCGGTTAGGGAGTATGAGGAGCCGGAGTGGACCAAAGTGGTTGAGAGGAGGAGAAAATATGGTGATCCTGAGGAGGAGAAGGTAAAAGAGATAGAGGAATGGGAGTGTGTTGTTTGTAGGAACGGATTTAGGAGTGAGAAGCAGTGCAGAAATCACGAGCAGTCGAAGAAGCACCTTCGTATGGTTTCAGAGTTAATAGAGTTATTGCAATCTAACCATCGTGAAATTGTTCTTGGGTCGATGGAGGACAAGAGGGATTATGAAAAGCTTGATAAAGAAGAGGTTTCGGTGAAAGCAAAAGGGGATGAAGTGGTTGGAGAGAGTGATGAGTTTTCTAATTGTGTCAGTGACAATAGGTGGGAAAACTTTAGTGAAGCAGTTGAATATGCTGAGGAGGAGGAGGAGGTGGATGAGATGGATGTTCTTCTAGCCATGGTGGCAAGGGAAAAGGCTATGGAAAAGGTTGGTGAAATTTTTTTTGAAGCAATGGTTGAGTACATGGCGACCAGTAGTCATGTGGATAACGATGCCGATGAGGTAGCTATAAAACATGATCAGCTAAAGCATATGAATAATAATGGAGGAGACAGGAAACCGAAGAGAAGGAGGAGGGTGAAGAGTACTAGAACTAACCAACTTGATTGTTCAAACAGAAAGGAATCAAAACCTGATTCTAGTGTAGCAAAAGGAGATGATGATGAAACACAGCATATATATATATCAAGAAAAGAAAGGAGGAGTAAGAAGAGTAAAAGAGCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

446

Amino Acids

52.37

Weight (kDa)

8.27

Isoelectric Point (pI)

61.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZUO1-like_ZHD	PF21884	87 - 160	5.6e-12	Zuotin-like, zuotin homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	128, 279
AasI	GACNNNNNNGTC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	134
AccII	CGCG	1 cut(s)	119
AclWI	GGATC	1 cut(s)	635
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	1047
AfaI	GTAC	4 cut(s)	341, 425, 1073, 1198
AfiI	CCNNNNNNNGG	4 cut(s)	201, 202, 229, 757
AgsI	TTSAA	5 cut(s)	57, 96, 959, 1058, 1224
AhdI	GACNNNNNGTC	1 cut(s)	1086
AjuI	GAANNNNNNNTTGG	4 cut(s)	551, 583, 792, 824
AluBI	AGCT	5 cut(s)	377, 401, 844, 1118, 1135
AluI	AGCT	5 cut(s)	377, 401, 844, 1118, 1135
Alw26I	GTCTC	2 cut(s)	362, 1155
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	2 cut(s)	114, 411
ApoI	RAATTY	1 cut(s)	1047
AseI	ATTAAT	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	804
AspS9I	GGNCC	2 cut(s)	382, 606
AsuHPI	GGTGA	4 cut(s)	650, 877, 1055, 1201
AvaII	GGWCC	2 cut(s)	382, 606
AxyI	CCTNAGG	2 cut(s)	261, 645
BauI	CACGAG	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	503
BbvCI	CCTCAGC	1 cut(s)	966
BccI	CCATC	4 cut(s)	517, 801, 811, 985
BceAI	ACGGC	3 cut(s)	114, 183, 507
BciVI	GTATCC	1 cut(s)	260
BclI	TGATCA	1 cut(s)	1129
BcoDI	GTCTC	2 cut(s)	362, 1155
BfaI	CTAG	4 cut(s)	402, 1004, 1200, 1251
BfuI	GTATCC	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	1013
BisI	GCNGC	3 cut(s)	74, 117, 120
BlsI	GCNGC	3 cut(s)	75, 118, 121
BmcAI	AGTACT	1 cut(s)	1198
Bme18I	GGWCC	2 cut(s)	382, 606
BmeRI	GACNNNNNGTC	1 cut(s)	1086
BmgT120I	GGNCC	2 cut(s)	382, 606
BmiI	GGNNCC	2 cut(s)	327, 597
BmsI	GCATC	1 cut(s)	1093
BpiI	GAAGAC	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	966
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	117, 199, 227, 1008
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 94, 118, 124, 587, 617
Bsc4I	CCNNNNNNNGG	4 cut(s)	201, 202, 229, 757
Bse1I	ACTGG	2 cut(s)	290, 1083
Bse21I	CCTNAGG	2 cut(s)	261, 645
Bse3DI	GCAATG	2 cut(s)	171, 1068
BseDI	CCNNGG	4 cut(s)	117, 199, 227, 1008
BseGI	GGATG	3 cut(s)	886, 991, 1000
BseLI	CCNNNNNNNGG	4 cut(s)	201, 202, 229, 757
BseMI	GCAATG	2 cut(s)	171, 1068
BseMII	CTCAG	4 cut(s)	252, 339, 636, 957
BseNI	ACTGG	2 cut(s)	290, 1083
BseX3I	CGGCCG	1 cut(s)	114
BseYI	CCCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	742
Bsh1236I	CGCG	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	116, 413
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	113, 599
BslI	CCNNNNNNNGG	4 cut(s)	201, 202, 229, 757
BsmAI	GTCTC	2 cut(s)	362, 1155
BsnI	GGCC	2 cut(s)	116, 413
Bso31I	GGTCTC	1 cut(s)	362
Bsp143I	GATC	2 cut(s)	640, 1129
Bsp19I	CCATGG	2 cut(s)	227, 1008
BspANI	GGCC	2 cut(s)	116, 413
BspCNI	CTCAG	4 cut(s)	253, 340, 637, 958
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	327, 597
BspPI	GGATC	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	171, 1068
BsrI	ACTGG	2 cut(s)	290, 1083
BssECI	CCNNGG	4 cut(s)	117, 199, 227, 1008
BssMI	GATC	2 cut(s)	640, 1129
BssSI	CACGAG	1 cut(s)	731
BssT1I	CCWWGG	2 cut(s)	227, 1008
Bst2BI	CACGAG	1 cut(s)	731
Bst6I	CTCTTC	6 cut(s)	362, 522, 849, 1169, 1187, 1316
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	4 cut(s)	261, 348, 645, 966
BstDSI	CCRYGG	4 cut(s)	117, 199, 227, 1008
BstF5I	GGATG	3 cut(s)	886, 991, 1000
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	643, 1132
BstMAI	GTCTC	2 cut(s)	362, 1155
BstMBI	GATC	2 cut(s)	640, 1129
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 1013
BstUI	CGCG	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	503
BstZI	CGGCCG	1 cut(s)	114
Bsu36I	CCTNAGG	2 cut(s)	261, 645
BsuI	GTATCC	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	116, 413
BtgI	CCRYGG	4 cut(s)	117, 199, 227, 1008
BtsCI	GGATG	3 cut(s)	886, 991, 1000
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	2 cut(s)	725, 928
Cac8I	GCNNGC	1 cut(s)	173
CciI	TCATGA	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	382, 606
Cfr42I	CCGCGG	1 cut(s)	120
Csp6I	GTAC	4 cut(s)	340, 424, 1072, 1197
CviAII	CATG	9 cut(s)	181, 228, 332, 394, 481, 1009, 1075, 1091, 1127
CviQI	GTAC	4 cut(s)	340, 424, 1072, 1197
DdeI	CTNAG	4 cut(s)	261, 348, 645, 966
DpnI	GATC	2 cut(s)	642, 1131
DpnII	GATC	2 cut(s)	640, 1129
DrdI	GACNNNNNNGTC	1 cut(s)	476
DriI	GACNNNNNGTC	1 cut(s)	1086
DseDI	GACNNNNNNGTC	1 cut(s)	476
EaeI	YGGCCR	1 cut(s)	114
EagI	CGGCCG	1 cut(s)	114
Eam1104I	CTCTTC	6 cut(s)	362, 522, 849, 1169, 1187, 1316
Eam1105I	GACNNNNNGTC	1 cut(s)	1086
EarI	CTCTTC	6 cut(s)	362, 522, 849, 1169, 1187, 1316
EciI	GGCGGA	2 cut(s)	212, 374
EclXI	CGGCCG	1 cut(s)	114
Eco130I	CCWWGG	2 cut(s)	227, 1008
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	2 cut(s)	382, 606
Eco52I	CGGCCG	1 cut(s)	114
Eco81I	CCTNAGG	2 cut(s)	261, 645
EcoT14I	CCWWGG	2 cut(s)	227, 1008
ErhI	CCWWGG	2 cut(s)	227, 1008
FaeI	CATG	9 cut(s)	184, 231, 335, 397, 484, 1012, 1078, 1094, 1130
FatI	CATG	9 cut(s)	180, 227, 331, 393, 480, 1008, 1074, 1090, 1126
FauI	CCCGC	2 cut(s)	203, 369
FauNDI	CATATG	1 cut(s)	1143
FbaI	TGATCA	1 cut(s)	1129
FblI	GTMKAC	1 cut(s)	134
Fnu4HI	GCNGC	3 cut(s)	74, 117, 120
FokI	GGATG	3 cut(s)	893, 998, 1007
Fsp4HI	GCNGC	3 cut(s)	74, 117, 120
FspBI	CTAG	4 cut(s)	402, 1004, 1200, 1251
GluI	GCNGC	3 cut(s)	74, 117, 120
GsaI	CCCAGC	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	116, 413
HapII	CCGG	2 cut(s)	113, 599
Hin1II	CATG	9 cut(s)	184, 231, 335, 397, 484, 1012, 1078, 1094, 1130
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	7 cut(s)	19, 109, 256, 344, 350, 1235, 1247
HpaII	CCGG	2 cut(s)	113, 599
HphI	GGTGA	4 cut(s)	650, 877, 1055, 1201
Hpy166II	GTNNAC	3 cut(s)	135, 213, 606
Hpy188I	TCNGA	4 cut(s)	108, 141, 349, 766
Hpy188III	TCNNGA	8 cut(s)	181, 238, 253, 260, 644, 731, 797, 1299
Hpy8I	GTNNAC	3 cut(s)	135, 213, 606
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	8 cut(s)	21, 87, 403, 412, 568, 649, 761, 1173
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	484, 723, 784
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 1013
HpyF3I	CTNAG	4 cut(s)	261, 348, 645, 966
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	9 cut(s)	184, 231, 335, 397, 484, 1012, 1078, 1094, 1130
Ksp22I	TGATCA	1 cut(s)	1129
KspI	CCGCGG	1 cut(s)	120
Kzo9I	GATC	2 cut(s)	640, 1129
LmnI	GCTCC	1 cut(s)	595
LweI	GCATC	1 cut(s)	1093
MaeI	CTAG	4 cut(s)	402, 1004, 1200, 1251
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	923
MalI	GATC	2 cut(s)	642, 1131
MboI	GATC	2 cut(s)	640, 1129
MluCI	AATT	4 cut(s)	90, 801, 913, 1047
MlyI	GAGTC	4 cut(s)	13, 103, 250, 359
MmeI	TCCRAC	4 cut(s)	131, 164, 549, 871
MroXI	GAANNNNTTC	1 cut(s)	804
MseI	TTAA	3 cut(s)	89, 554, 770
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	2 cut(s)	113, 599
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	2 cut(s)	455, 1013
NcoI	CCATGG	2 cut(s)	227, 1008
NdeI	CATATG	1 cut(s)	1143
NdeII	GATC	2 cut(s)	640, 1129
NlaIII	CATG	9 cut(s)	184, 231, 335, 397, 484, 1012, 1078, 1094, 1130
NlaIV	GGNNCC	2 cut(s)	327, 597
NmuCI	GTSAC	1 cut(s)	923
PagI	TCATGA	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	804
PfeI	GAWTC	3 cut(s)	344, 1235, 1247
PkrI	GCNGC	3 cut(s)	75, 118, 121
PleI	GAGTC	4 cut(s)	13, 103, 250, 358
PpsI	GAGTC	4 cut(s)	13, 103, 250, 358
PshBI	ATTAAT	1 cut(s)	89
PsiI	TTATAA	2 cut(s)	128, 279
PspFI	CCCAGC	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	327, 597
PspPI	GGNCC	2 cut(s)	382, 606
RsaI	GTAC	4 cut(s)	341, 425, 1073, 1198
RsaNI	GTAC	4 cut(s)	340, 424, 1072, 1197
RseI	CAYNNNNRTG	1 cut(s)	485
SacII	CCGCGG	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	89, 554, 770
SatI	GCNGC	3 cut(s)	74, 117, 120
Sau3AI	GATC	2 cut(s)	640, 1129
Sau96I	GGNCC	2 cut(s)	382, 606
ScaI	AGTACT	1 cut(s)	1198
SchI	GAGTC	4 cut(s)	13, 103, 250, 359
SfaNI	GCATC	1 cut(s)	1093
Sfr303I	CCGCGG	1 cut(s)	120
SgrBI	CCGCGG	1 cut(s)	120
SinI	GGWCC	2 cut(s)	382, 606
SmiMI	CAYNNNNRTG	1 cut(s)	485
Sse9I	AATT	4 cut(s)	90, 801, 913, 1047
SspMI	CTAG	4 cut(s)	402, 1004, 1200, 1251
StyI	CCWWGG	2 cut(s)	227, 1008
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	5 cut(s)	68, 80, 149, 740, 815
TasI	AATT	4 cut(s)	90, 801, 913, 1047
TatI	WGTACW	3 cut(s)	423, 1071, 1196
TauI	GCSGC	3 cut(s)	76, 119, 122
TfiI	GAWTC	3 cut(s)	344, 1235, 1247
Tru1I	TTAA	3 cut(s)	89, 554, 770
Tru9I	TTAA	3 cut(s)	89, 554, 770
TscAI	CASTG	2 cut(s)	725, 928
TseFI	GTSAC	1 cut(s)	923
Tsp45I	GTSAC	1 cut(s)	923
TspDTI	ATGAA	7 cut(s)	169, 197, 410, 852, 897, 1160, 1290
TspGWI	ACGGA	2 cut(s)	515, 714
TspRI	CASTG	2 cut(s)	725, 928
VpaK11BI	GGWCC	2 cut(s)	382, 606
VspI	ATTAAT	1 cut(s)	89
XapI	RAATTY	1 cut(s)	1047
XcmI	CCANNNNNNNNNTGG	2 cut(s)	234, 1090
XmiI	GTMKAC	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	804
XspI	CTAG	4 cut(s)	402, 1004, 1200, 1251
ZrmI	AGTACT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.