RLG00000003704

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002151
Physical Location & Seq
Reverse (-)
51847210 .. 51848049
840 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003704

Sequence Viewer

Length: 636 bp
ATGGTTGCAAAGTTAATGGAGTTGTTGGAGGTTTTGGAGGAAGCAAAAAGGAATGAGGTGGTTGGAGGGAGTGATAGCGAAGAGGAGTTTGTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAAGAAGTGGAGGAGGATGAGATGGGTGTTCTTGGAGCAATGGTGGTGAGGCAAAAGACGATGGAAAAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCACGGCGACCAGTAGTCAAGAGGTAAACAATGCTGACAAGGTGGCTATGGAGCATGACAAGCTAAAGAACACCAATAAGAACGGAGAAGAGAGGAAACCTAGGAAGAGAAGAGCCAAGAGTACTAGAAATAACGAACATGATGGTTCAAATATGAAGGAATCCAAACCCGATTGTAACGCAGAAAAAGGATATGATGAGGATCAGATCAAGAAAATGGAGGGTGGAGGGAGGAAAGAGAGGAGCGGTAAGAAGAGCAACGGTCAAGGAGATATTGAGCAGAAGAAAATGAGAAGTGGAGGAAGGAGGGAAGAGAAGAAGGCTAAGAATAGAAATGGTGGAGAAAGAAGAATTAATGAGCATGATTACACCGGAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.74

Weight (kDa)

5.19

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 501
AciI CCGC 1 cut(s) 501
AclWI GGATC 1 cut(s) 465
AfaI GTAC 1 cut(s) 379
AgsI TTSAA 3 cut(s) 239, 254, 405
AhdI GACNNNNNGTC 1 cut(s) 270
AluBI AGCT 2 cut(s) 124, 319
AluI AGCT 2 cut(s) 124, 319
AlwI GGATC 1 cut(s) 465
AseI ATTAAT 1 cut(s) 609
Asp700I GAANNNNTTC 1 cut(s) 231
AspA2I CCTAGG 1 cut(s) 356
AsuHPI GGTGA 3 cut(s) 149, 208, 236
AvrII CCTAGG 1 cut(s) 356
BccI CCATC 4 cut(s) 89, 166, 205, 392
BceAI ACGGC 1 cut(s) 276
BfaI CTAG 3 cut(s) 357, 381, 634
BlnI CCTAGG 1 cut(s) 356
BmcAI AGTACT 1 cut(s) 379
BmeRI GACNNNNNGTC 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 258, 356
BsaWI WCCGGW 1 cut(s) 626
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse1I ACTGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 456
BseDI CCNNGG 2 cut(s) 258, 356
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 456
BseMI GCAATG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 267
BseRI GAGGAG 3 cut(s) 98, 176, 511
BsiSI CCGG 1 cut(s) 627
Bsp143I GATC 2 cut(s) 457, 462
BspACI CCGC 1 cut(s) 501
BspPI GGATC 1 cut(s) 465
BspQI GCTCTTC 2 cut(s) 361, 503
BsrBI CCGCTC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 258, 356
BssMI GATC 2 cut(s) 457, 462
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 6 cut(s) 75, 339, 356, 361, 503, 561
BstDEI CTNAG 2 cut(s) 125, 579
BstDSI CCRYGG 1 cut(s) 258
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 2 cut(s) 460, 465
BstMBI GATC 2 cut(s) 457, 462
BstMWI GCNNNNNNNGC 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 258
BtsCI GGATG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 378
CviAII CATG 3 cut(s) 311, 395, 617
CviJI RGCY 6 cut(s) 124, 302, 319, 371, 578, 633
CviKI_1 RGCY 6 cut(s) 124, 302, 319, 371, 578, 633
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 2 cut(s) 125, 579
DpnI GATC 2 cut(s) 459, 464
DpnII GATC 2 cut(s) 457, 462
DriI GACNNNNNGTC 1 cut(s) 270
Eam1104I CTCTTC 6 cut(s) 75, 339, 356, 361, 503, 561
Eam1105I GACNNNNNGTC 1 cut(s) 270
EarI CTCTTC 6 cut(s) 75, 339, 356, 361, 503, 561
Eco130I CCWWGG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 3 cut(s) 314, 398, 620
FaiI YATR 6 cut(s) 305, 312, 396, 410, 450, 618
FalI AAGNNNNNCTT 2 cut(s) 219, 251
FatI CATG 3 cut(s) 310, 394, 616
FokI GGATG 1 cut(s) 179
FspBI CTAG 3 cut(s) 357, 381, 634
HapII CCGG 1 cut(s) 627
Hin1II CATG 3 cut(s) 314, 398, 620
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 239, 416
HpaII CCGG 1 cut(s) 627
HphI GGTGA 3 cut(s) 149, 208, 236
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 114, 462
Hpy188III TCNNGA 3 cut(s) 236, 275, 466
Hpy8I GTNNAC 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 406, 552, 568
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4V TGCA 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 2 cut(s) 125, 579
Hsp92II CATG 3 cut(s) 314, 398, 620
Kzo9I GATC 2 cut(s) 457, 462
LguI GCTCTTC 2 cut(s) 361, 503
LmnI GCTCC 3 cut(s) 185, 307, 498
LpnPI CCDG 2 cut(s) 120, 280
MaeI CTAG 3 cut(s) 357, 381, 634
MaeIII GTNAC 1 cut(s) 431
MalI GATC 2 cut(s) 459, 464
MbiI CCGCTC 1 cut(s) 501
MboI GATC 2 cut(s) 457, 462
MluCI AATT 1 cut(s) 606
MmeI TCCRAC 2 cut(s) 6, 43
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 3 cut(s) 14, 102, 609
MspI CCGG 1 cut(s) 627
MwoI GCNNNNNNNGC 1 cut(s) 316
NdeII GATC 2 cut(s) 457, 462
NlaIII CATG 3 cut(s) 314, 398, 620
PciSI GCTCTTC 2 cut(s) 361, 503
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 239, 416
PshBI ATTAAT 1 cut(s) 609
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SapI GCTCTTC 2 cut(s) 361, 503
SaqAI TTAA 3 cut(s) 14, 102, 609
Sau3AI GATC 2 cut(s) 457, 462
ScaI AGTACT 1 cut(s) 379
SetI ASST 9 cut(s) 33, 60, 126, 139, 222, 282, 300, 321, 358
Sse9I AATT 1 cut(s) 606
SsiI CCGC 1 cut(s) 501
SspI AATATT 1 cut(s) 246
SspMI CTAG 3 cut(s) 357, 381, 634
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 518
TasI AATT 1 cut(s) 606
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 2 cut(s) 239, 416
Tru1I TTAA 3 cut(s) 14, 102, 609
Tru9I TTAA 3 cut(s) 14, 102, 609
TspDTI ATGAA 2 cut(s) 165, 425
TspGWI ACGGA 1 cut(s) 354
VspI ATTAAT 1 cut(s) 609
XmaJI CCTAGG 1 cut(s) 356
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 3 cut(s) 357, 381, 634
ZrmI AGTACT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.