Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000785.1

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

172726 .. 173448

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000785.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgcagatgacggcgaagacggaggaggagagggagatggaagaggagagggagaggaggaagcggttaaagaaagagaagttggagaaggcggttagggagtatgaggagccggagtggaccaaagtggttgagaggaggagaaaatatggtgatcctgaggaggagaaggtaaaagagatagaggaatgggagtgtgttgtttgtaggaacggatttagtagtgagaagcagtgcagaaatcacgagcagttgaagaagcaccttcgtatggtttcagagttaatagtattgcaatctaaccatcgtgaaattgttgttgggtcgatggaggacaagaggaattatgaagagcttgataaagaagaggtttcggtgaaagcaaaaggggatgaagtggttggagagagtgatgagttttctaattgtgtcagtgacaataggtgggaaaactttagtgaagcagttgaatatgctgaggaggaggaggaggtggatgagatggatgttcttctagccatatggtggcaagggaaaaggctatatatggaaaaggttggtgaaattttttttgaagcaatggttgagtacattgcgaccagtagtcatgtggataacgatgccgatgaggtagctataaaacatgatcagctaaagcatatgaataataatggaggagataggaaaccgaagagaaggaggagggtgaagagtacgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

240

Amino Acids

28.79

Weight (kDa)

5.06

Isoelectric Point (pI)

61.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	525
AciI	CCGC	2 cut(s)	64, 92
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	564
AfaI	GTAC	3 cut(s)	590, 715, 719
AfiI	CCNNNNNNNGG	2 cut(s)	271, 525
AgsI	TTSAA	3 cut(s)	256, 470, 575
AhdI	GACNNNNNGTC	1 cut(s)	603
AjuI	GAANNNNNNNTTGG	4 cut(s)	65, 97, 303, 335
AluBI	AGCT	3 cut(s)	355, 635, 652
AluI	AGCT	3 cut(s)	355, 635, 652
AlwI	GGATC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	4 cut(s)	164, 388, 572, 718
AvaII	GGWCC	1 cut(s)	120
AxyI	CCTNAGG	1 cut(s)	159
BarI	GAAGNNNNNNTAC	1 cut(s)	701
BauI	CACGAG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	477
BccI	CCATC	4 cut(s)	31, 312, 322, 496
BceAI	ACGGC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	646
BfaI	CTAG	2 cut(s)	515, 721
Bme18I	GGWCC	1 cut(s)	120
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	111
BmsI	GCATC	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	23
Bpu10I	CCTNAGC	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 525
Bse1I	ACTGG	1 cut(s)	600
Bse21I	CCTNAGG	1 cut(s)	159
Bse3DI	GCAATG	2 cut(s)	585, 591
BseGI	GGATG	3 cut(s)	397, 502, 511
BseLI	CCNNNNNNNGG	2 cut(s)	271, 525
BseMI	GCAATG	2 cut(s)	585, 591
BseMII	CTCAG	2 cut(s)	150, 468
BseNI	ACTGG	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	271, 525
Bsp143I	GATC	2 cut(s)	154, 646
BspACI	CCGC	2 cut(s)	64, 92
BspCNI	CTCAG	2 cut(s)	151, 469
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	149
BspQI	GCTCTTC	1 cut(s)	345
BsrDI	GCAATG	2 cut(s)	585, 591
BsrI	ACTGG	1 cut(s)	600
BssMI	GATC	2 cut(s)	154, 646
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst6I	CTCTTC	5 cut(s)	36, 345, 360, 686, 704
BstBAI	YACGTR	1 cut(s)	717
BstDEI	CTNAG	2 cut(s)	159, 477
BstF5I	GGATG	3 cut(s)	397, 502, 511
BstKTI	GATC	2 cut(s)	157, 649
BstMBI	GATC	2 cut(s)	154, 646
BstSNI	TACGTA	1 cut(s)	717
BstV2I	GAAGAC	1 cut(s)	23
Bsu36I	CCTNAGG	1 cut(s)	159
BtsCI	GGATG	3 cut(s)	397, 502, 511
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	2 cut(s)	239, 439
Cfr13I	GGNCC	1 cut(s)	120
Csp6I	GTAC	3 cut(s)	589, 714, 718
CviAII	CATG	2 cut(s)	608, 644
CviJI	RGCY	6 cut(s)	112, 355, 518, 541, 635, 652
CviKI_1	RGCY	6 cut(s)	112, 355, 518, 541, 635, 652
CviQI	GTAC	3 cut(s)	589, 714, 718
DdeI	CTNAG	2 cut(s)	159, 477
DpnI	GATC	2 cut(s)	156, 648
DpnII	GATC	2 cut(s)	154, 646
DriI	GACNNNNNGTC	1 cut(s)	603
Eam1104I	CTCTTC	5 cut(s)	36, 345, 360, 686, 704
Eam1105I	GACNNNNNGTC	1 cut(s)	603
EarI	CTCTTC	5 cut(s)	36, 345, 360, 686, 704
Eco105I	TACGTA	1 cut(s)	717
Eco47I	GGWCC	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	611, 647
FatI	CATG	2 cut(s)	607, 643
FauNDI	CATATG	2 cut(s)	521, 660
FbaI	TGATCA	1 cut(s)	646
FokI	GGATG	3 cut(s)	404, 509, 518
FspBI	CTAG	2 cut(s)	515, 721
HapII	CCGG	1 cut(s)	113
Hin1II	CATG	2 cut(s)	611, 647
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	4 cut(s)	164, 388, 572, 718
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	3 cut(s)	158, 245, 308
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	4 cut(s)	82, 163, 275, 690
HpyCH4IV	ACGT	1 cut(s)	716
HpyCH4V	TGCA	3 cut(s)	4, 237, 295
HpyF3I	CTNAG	2 cut(s)	159, 477
HpySE526I	ACGT	1 cut(s)	716
Hsp92II	CATG	2 cut(s)	611, 647
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	154, 646
LguI	GCTCTTC	1 cut(s)	345
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	3 cut(s)	126, 171, 613
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	2 cut(s)	515, 721
MaeII	ACGT	1 cut(s)	716
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	2 cut(s)	156, 648
MboI	GATC	2 cut(s)	154, 646
MboII	GAAGA	8 cut(s)	28, 53, 268, 362, 377, 503, 703, 721
MluCI	AATT	4 cut(s)	312, 343, 424, 564
MmeI	TCCRAC	2 cut(s)	63, 382
MseI	TTAA	2 cut(s)	68, 284
MspI	CCGG	1 cut(s)	113
NdeI	CATATG	2 cut(s)	521, 660
NdeII	GATC	2 cut(s)	154, 646
NlaIII	CATG	2 cut(s)	611, 647
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	345
PflMI	CCANNNNNTGG	1 cut(s)	525
Ppu21I	YACGTR	1 cut(s)	717
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	120
RsaI	GTAC	3 cut(s)	590, 715, 719
RsaNI	GTAC	3 cut(s)	589, 714, 718
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	68, 284
Sau3AI	GATC	2 cut(s)	154, 646
Sau96I	GGNCC	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	610
SinI	GGWCC	1 cut(s)	120
SnaBI	TACGTA	1 cut(s)	717
Sse9I	AATT	4 cut(s)	312, 343, 424, 564
SsiI	CCGC	2 cut(s)	64, 92
SspMI	CTAG	2 cut(s)	515, 721
TaiI	ACGT	1 cut(s)	719
TaqI	TCGA	1 cut(s)	326
TasI	AATT	4 cut(s)	312, 343, 424, 564
TatI	WGTACW	1 cut(s)	588
Tru1I	TTAA	2 cut(s)	68, 284
Tru9I	TTAA	2 cut(s)	68, 284
TscAI	CASTG	2 cut(s)	239, 439
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	3 cut(s)	363, 408, 677
TspGWI	ACGGA	2 cut(s)	35, 228
TspRI	CASTG	2 cut(s)	239, 439
Van91I	CCANNNNNTGG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	120
XapI	RAATTY	1 cut(s)	564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	607
XspI	CTAG	2 cut(s)	515, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.