Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

50202420 .. 50207083

Gene Structure 4664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAGCATGACAAGCTAAAGAACACCAATAAGAACGGAGAAGAGAGGAAACCTAGGAGGGGAAGAGCCAAGAGTACTAGAAATAACGAACATGATGGTTCAAATATGAAGGAATCCAAACCTGATTGTAACGCAGAAAAAGGATATGATGAGGATCAGATCAAGAAAATGAGGGTGGAGGGAGGAAAGAGAGGAGCGGTAAGAAGAGCAACGAAGAAAGAGGTCGAAATCGCCCAAAATCGCTCAAATCCGAAATTCGTCTTCCTCGGGTTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.58

Weight (kDa)

9.94

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	254
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	2 cut(s)	102, 274
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
AlwI	GGATC	1 cut(s)	162
Ama87I	CYCGRG	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	254
AspA2I	CCTAGG	1 cut(s)	53
AvaI	CYCGRG	1 cut(s)	266
AvrII	CCTAGG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	253
BccI	CCATC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	54, 78
BlnI	CCTAGG	1 cut(s)	53
BmcAI	AGTACT	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	253
BsaBI	GATNNNNATC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	53, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	53, 265
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	154, 159
BspACI	CCGC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	162
BspQI	GCTCTTC	2 cut(s)	58, 199
BsrBI	CCGCTC	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	53, 265
BssMI	GATC	2 cut(s)	154, 159
BssT1I	CCWWGG	1 cut(s)	53
Bst6I	CTCTTC	3 cut(s)	36, 58, 199
BstKTI	GATC	2 cut(s)	157, 162
BstMBI	GATC	2 cut(s)	154, 159
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	75
CviAII	CATG	2 cut(s)	8, 92
CviJI	RGCY	2 cut(s)	16, 68
CviKI_1	RGCY	2 cut(s)	16, 68
CviQI	GTAC	1 cut(s)	75
DpnI	GATC	2 cut(s)	156, 161
DpnII	GATC	2 cut(s)	154, 159
Eam1104I	CTCTTC	3 cut(s)	36, 58, 199
EarI	CTCTTC	3 cut(s)	36, 58, 199
Eco130I	CCWWGG	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	266
EcoT14I	CCWWGG	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	53
FaeI	CATG	2 cut(s)	11, 95
FaiI	YATR	4 cut(s)	9, 93, 107, 147
FatI	CATG	2 cut(s)	7, 91
FspBI	CTAG	2 cut(s)	54, 78
Hin1II	CATG	2 cut(s)	11, 95
HinfI	GANTC	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	159, 252
Hpy188III	TCNNGA	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	11, 95
Kzo9I	GATC	2 cut(s)	154, 159
LguI	GCTCTTC	2 cut(s)	58, 199
LmnI	GCTCC	2 cut(s)	4, 194
LpnPI	CCDG	1 cut(s)	135
MaeI	CTAG	2 cut(s)	54, 78
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	156, 161
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	2 cut(s)	154, 159
MboII	GAAGA	5 cut(s)	53, 75, 216, 226, 253
MluCI	AATT	2 cut(s)	254, 274
MnlI	CCTC	9 cut(s)	39, 51, 145, 165, 172, 176, 185, 214, 275
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	2 cut(s)	154, 159
NlaIII	CATG	2 cut(s)	11, 95
PciSI	GCTCTTC	2 cut(s)	58, 199
PfeI	GAWTC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SapI	GCTCTTC	2 cut(s)	58, 199
Sau3AI	GATC	2 cut(s)	154, 159
ScaI	AGTACT	1 cut(s)	76
SetI	ASST	4 cut(s)	18, 55, 124, 225
SgeI	CNNG	8 cut(s)	20, 25, 66, 82, 90, 104, 134, 175
Sse9I	AATT	2 cut(s)	254, 274
SsiI	CCGC	1 cut(s)	197
SspMI	CTAG	2 cut(s)	54, 78
StyI	CCWWGG	1 cut(s)	53
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	254, 274
TatI	WGTACW	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	51
XapI	RAATTY	1 cut(s)	254
XmaJI	CCTAGG	1 cut(s)	53
XspI	CTAG	2 cut(s)	54, 78
ZrmI	AGTACT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.