Rw7G016360

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002151
Physical Location & Seq
Forward (+)
16691523 .. 16694834
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G016360.1

Sequence Viewer

Length: 1746 bp
ATGGTGAAGAGCACAGAGCGCGTCTGCCACTACGAGACCTTAGGCCTCGAACCAAATTGCTCAGAAAAAGAAATCAAGGCTGCTCACAGGAAACTAATCCTCACGTACCATTGGGACAAATGTAGATCATCCCAATGCGGCTTGTCCCAAGAAGAAGCCACTGCCAAATTTTTAGAGGTCCAACAAGCCTACGAAATCCTTATGGATCCCATAAAGCGAGAAACCTATAACGCCTACCGCCAGACCTACGCTGTCCCTGAAGTTTTCAACCCCGACCTAGAAGTACCCTTTGACAACATCGTCTTCAACGGCTACTCCAGCTCCAGCCTCAGCTTCTACAATGTCTACTCTGACATTTTTCAAAGGATTTACGCCAACGAGCGCGCTTTTCAAAAGAAGAACGACCTGCCGTGGAATTCGGTTCACAAGCCTCCAGACATGGGCAATCTCGACACCCCTTATCCTGAGGTTGTCCAATTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCACATGATGAGTATGATCTAAGTCAGATCTCCCGCAAAGGGGTGAAGGAATGGTCCCGCATAAACATGAAGGCGAGGAAGAAAGCAAAGAAGGAATACAACAATAAGGTGCGATGTTTGACACAAACTGCGAAAAGGCTCGACAGGAGGGTCGTGCAGATGGTAGCGAAGAGGGAGGAGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGGAGGAAGCGGTTGAAGAAAGAGAAGTTGGTGAAGGCTATGGAGTATGAGGAGCAGGAGTGGACGAAACCGGTTGAGAGGAAGAGAAAATATAGTAACAAGGAGGAGGAGGAGGAGGAGGAAAAAGGGAGAGACGAATGGGAGTGTGTAGTCTGCAGGAAGGTGTTTAGGAGTGAGCGGCAGTGCAGAAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAGAGTTAATGGAGTTGTTGGAGGTTTCGGAGGAAAAACCAGATGAAGAAGAGGTTTTGGAGGAAGGAAAAAGGAATGAGGTGGTTGGAGGGAGTGATAGCGAAGCGGAGTTTGTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTGGAGGAGGATGAGATTGGTGTTCTTGAAGCAATGGTGGCAAGGCGAAAGACGATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCATGGCGAGTAGTAGTCAAGAGGTGAAGAATGCAGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACACCAATCAGAATGAAGGAGAAAGGAAACCGAGGAGAAGAAGAGCCAAGAGTAATAGAACTGACGAACGTGATGGTTCAAATATGAAGGAATCCAAACCTGATTGTAGTGCAGAAAAAGGATATGATGAGGATCAGATCAAGAAAAGGAAGGGTGGAGAGAGGAAAGAGAGGAGAGGTAAGAAGAGTAACGGTAAAGGAGATATTGAGCATAAGAAAATGAGGAGTGGAGGAAGGAGTGAAGAGAAGAAGGGTAAGAAGAGAAATGGTGGAGAAAGAAGAATTAATGAACATGGTACATCCTATTTTTCTGCTAATAGTAGACAGTTTTGTCCTAATTCAATCTTCAATCTTCAATCTCTTTCTCTTGCTATGACTAGAAATGAAAAGGGTTATTTTGCGCTAGGGTACCTTCAATTTTGGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

581

Amino Acids

68.51

Weight (kDa)

6.13

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 77 4.5e-17 DnaJ domain
ZUO1-like_ZHD PF21884 119 - 228 3.3e-16 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 295 - 319 1.1e-06 Zinc-finger double-stranded RNA-binding
zf-met PF12874 295 - 319 4.5e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 299, 680, 1647
Acc36I ACCTGC 1 cut(s) 414
Acc65I GGTACC 1 cut(s) 1725
AccB1I GGYRCC 1 cut(s) 1725
AccBSI CCGCTC 1 cut(s) 922
AccI GTMKAC 2 cut(s) 345, 1639
AccII CGCG 2 cut(s) 21, 384
AciI CCGC 8 cut(s) 138, 238, 565, 589, 754, 922, 961, 1076
AclWI GGATC 5 cut(s) 200, 213, 524, 537, 1458
AcsI RAATTY 2 cut(s) 167, 415
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 4 cut(s) 107, 285, 1615, 1727
AfiI CCNNNNNNNGG 3 cut(s) 440, 570, 571
AgeI ACCGGT 1 cut(s) 814
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 4 cut(s) 321, 333, 1117, 1312
AluI AGCT 4 cut(s) 321, 333, 1117, 1312
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 29, 870
AlwI GGATC 5 cut(s) 200, 213, 524, 537, 1458
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 167, 415
AseI ATTAAT 1 cut(s) 1602
AsiGI ACCGGT 1 cut(s) 814
Asp700I GAANNNNTTC 1 cut(s) 1224
Asp718I GGTACC 1 cut(s) 1725
AspLEI GCGC 4 cut(s) 21, 384, 386, 1720
AspS9I GGNCC 2 cut(s) 178, 585
AsuHPI GGTGA 6 cut(s) 16, 586, 787, 1142, 1229, 1285
AvaII GGWCC 2 cut(s) 178, 585
AxyI CCTNAGG 2 cut(s) 40, 465
BamHI GGATCC 2 cut(s) 205, 529
BanI GGYRCC 1 cut(s) 1725
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 14
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 67
BccI CCATC 4 cut(s) 685, 1082, 1198, 1385
BceAI ACGGC 2 cut(s) 325, 394
BcoDI GTCTC 2 cut(s) 29, 870
BfaI CTAG 4 cut(s) 278, 1695, 1721, 1744
BfmI CTRYAG 1 cut(s) 898
BfuAI ACCTGC 1 cut(s) 414
BglII AGATCT 1 cut(s) 558
BisI GCNGC 3 cut(s) 81, 139, 923
BlsI GCNGC 3 cut(s) 82, 140, 924
Bme18I GGWCC 2 cut(s) 178, 585
BmgT120I GGNCC 2 cut(s) 178, 585
BmiI GGNNCC 4 cut(s) 207, 531, 587, 1727
BmsI GCATC 1 cut(s) 964
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 3 cut(s) 301, 307, 417
Bpu10I CCTNAGC 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 1449
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 410, 1251, 1349
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 6 cut(s) 299, 305, 329, 335, 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 570, 571
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 1 cut(s) 494
Bse21I CCTNAGG 2 cut(s) 40, 465
Bse3DI GCAATG 1 cut(s) 1188
Bse8I GATNNNNATC 1 cut(s) 1449
BseDI CCNNGG 3 cut(s) 410, 1251, 1349
BseGI GGATG 3 cut(s) 128, 1165, 1616
BseJI GATNNNNATC 1 cut(s) 1449
BseLI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BseMI GCAATG 1 cut(s) 1188
BseMII CTCAG 3 cut(s) 75, 343, 456
BseNI ACTGG 1 cut(s) 494
BsePI GCGCGC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 3 cut(s) 707, 949, 1449
Bsh1236I CGCG 2 cut(s) 21, 384
BshFI GGCC 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 1725
BshTI ACCGGT 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 4 cut(s) 128, 130, 239, 571
BslI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BsmAI GTCTC 2 cut(s) 29, 870
BsmBI CGTCTC 1 cut(s) 870
BsmFI GGGAC 4 cut(s) 128, 130, 239, 571
BsmI GAATGC 1 cut(s) 1285
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
Bsp19I CCATGG 1 cut(s) 1251
BspACI CCGC 8 cut(s) 138, 238, 565, 589, 754, 922, 961, 1076
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 3 cut(s) 74, 342, 457
BspFNI CGCG 2 cut(s) 21, 384
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 4 cut(s) 207, 531, 587, 1727
BspMAI CTGCAG 1 cut(s) 902
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 5 cut(s) 200, 213, 524, 537, 1458
BspQI GCTCTTC 2 cut(s) 2, 1354
BspT107I GGYRCC 1 cut(s) 1725
BspTNI GGTCTC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 922
BsrDI GCAATG 1 cut(s) 1188
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 3 cut(s) 410, 1251, 1349
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
BssT1I CCWWGG 1 cut(s) 1251
Bst4CI ACNGT 2 cut(s) 1511, 1644
Bst6I CTCTTC 9 cut(s) 2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 6 cut(s) 40, 61, 329, 465, 551, 1118
BstDSI CCRYGG 2 cut(s) 410, 1251
BstF5I GGATG 3 cut(s) 128, 1165, 1616
BstFNI CGCG 2 cut(s) 21, 384
BstHHI GCGC 4 cut(s) 21, 384, 386, 1720
BstKTI GATC 7 cut(s) 128, 208, 532, 550, 561, 1453, 1458
BstMAI GTCTC 2 cut(s) 29, 870
BstMBI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
BstMWI GCNNNNNNNGC 4 cut(s) 18, 318, 1187, 1309
BstSFI CTRYAG 1 cut(s) 898
BstUI CGCG 2 cut(s) 21, 384
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 3 cut(s) 205, 529, 558
BstYI RGATCY 3 cut(s) 205, 529, 558
Bsu36I CCTNAGG 2 cut(s) 40, 465
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 410, 1251
BtgZI GCGATG 1 cut(s) 658
BtsCI GGATG 3 cut(s) 128, 1165, 1616
BtsI GCAGTG 2 cut(s) 159, 932
BtsIMutI CAGTG 2 cut(s) 159, 932
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 937
CfoI GCGC 4 cut(s) 21, 384, 386, 1720
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 178, 585
CseI GACGC 1 cut(s) 10
Csp6I GTAC 4 cut(s) 106, 284, 1614, 1726
CspAI ACCGGT 1 cut(s) 814
CviAII CATG 8 cut(s) 439, 536, 598, 938, 964, 1252, 1304, 1610
CviQI GTAC 4 cut(s) 106, 284, 1614, 1726
DdeI CTNAG 6 cut(s) 40, 61, 329, 465, 551, 1118
DpnI GATC 7 cut(s) 127, 207, 531, 549, 560, 1452, 1457
DpnII GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
DrdI GACNNNNNNGTC 3 cut(s) 299, 680, 1647
DseDI GACNNNNNNGTC 3 cut(s) 299, 680, 1647
Eam1104I CTCTTC 9 cut(s) 2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
EarI CTCTTC 9 cut(s) 2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
Eco130I CCWWGG 1 cut(s) 1251
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 178, 585
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 2 cut(s) 40, 465
EcoRI GAATTC 1 cut(s) 415
EcoT14I CCWWGG 1 cut(s) 1251
ErhI CCWWGG 1 cut(s) 1251
Esp3I CGTCTC 1 cut(s) 870
FaeI CATG 8 cut(s) 442, 539, 601, 941, 967, 1255, 1307, 1613
FalI AAGNNNNNCTT 2 cut(s) 1212, 1244
FaqI GGGAC 4 cut(s) 128, 130, 239, 571
FatI CATG 8 cut(s) 438, 535, 597, 937, 963, 1251, 1303, 1609
FauI CCCGC 2 cut(s) 572, 596
FblI GTMKAC 2 cut(s) 345, 1639
Fnu4HI GCNGC 3 cut(s) 81, 139, 923
FokI GGATG 3 cut(s) 115, 1172, 1603
Fsp4HI GCNGC 3 cut(s) 81, 139, 923
FspBI CTAG 4 cut(s) 278, 1695, 1721, 1744
GlaI GCGC 4 cut(s) 20, 383, 385, 1719
GluI GCNGC 3 cut(s) 81, 139, 923
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 3 cut(s) 301, 307, 417
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 815
HgaI GACGC 1 cut(s) 10
HhaI GCGC 4 cut(s) 21, 384, 386, 1720
Hin1II CATG 8 cut(s) 442, 539, 601, 941, 967, 1255, 1307, 1613
Hin6I GCGC 4 cut(s) 19, 382, 384, 1718
HinP1I GCGC 4 cut(s) 19, 382, 384, 1718
HindIII AAGCTT 1 cut(s) 1115
HinfI GANTC 2 cut(s) 1232, 1409
HpaII CCGG 1 cut(s) 815
HphI GGTGA 6 cut(s) 16, 586, 787, 1142, 1229, 1285
Hpy166II GTNNAC 4 cut(s) 346, 424, 807, 1640
Hpy188I TCNGA 7 cut(s) 64, 352, 558, 1000, 1107, 1329, 1455
Hpy188III TCNNGA 8 cut(s) 434, 449, 464, 938, 1175, 1229, 1268, 1459
Hpy8I GTNNAC 4 cut(s) 346, 424, 807, 1640
HpyCH4III ACNGT 2 cut(s) 1511, 1644
HpyCH4IV ACGT 2 cut(s) 104, 1387
HpyCH4V TGCA 6 cut(s) 688, 900, 930, 971, 1283, 1430
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 318, 1187, 1309
HpyF3I CTNAG 6 cut(s) 40, 61, 329, 465, 551, 1118
HpySE526I ACGT 2 cut(s) 104, 1387
Hsp92II CATG 8 cut(s) 442, 539, 601, 941, 967, 1255, 1307, 1613
HspAI GCGC 4 cut(s) 19, 382, 384, 1718
KpnI GGTACC 1 cut(s) 1729
Kzo9I GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
LguI GCTCTTC 2 cut(s) 2, 1354
LmnI GCTCC 3 cut(s) 326, 796, 1300
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 964
MaeI CTAG 4 cut(s) 278, 1695, 1721, 1744
MaeII ACGT 2 cut(s) 104, 1387
MaeIII GTNAC 2 cut(s) 839, 1505
MalI GATC 7 cut(s) 127, 207, 531, 549, 560, 1452, 1457
MbiI CCGCTC 1 cut(s) 922
MboI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
MflI RGATCY 3 cut(s) 205, 529, 558
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 7 cut(s) 55, 167, 415, 476, 1599, 1654, 1733
MmeI TCCRAC 3 cut(s) 205, 969, 1036
MroXI GAANNNNTTC 1 cut(s) 1224
MseI TTAA 3 cut(s) 977, 1095, 1602
MslI CAYNNNNRTG 2 cut(s) 133, 596
MspI CCGG 1 cut(s) 815
Mva1269I GAATGC 1 cut(s) 1285
MvnI CGCG 2 cut(s) 21, 384
MwoI GCNNNNNNNGC 4 cut(s) 18, 318, 1187, 1309
NcoI CCATGG 1 cut(s) 1251
NdeII GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
NlaIII CATG 8 cut(s) 442, 539, 601, 941, 967, 1255, 1307, 1613
NlaIV GGNNCC 4 cut(s) 207, 531, 587, 1727
PagI TCATGA 1 cut(s) 937
PauI GCGCGC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 2, 1354
PctI GAATGC 1 cut(s) 1285
PdmI GAANNNNTTC 1 cut(s) 1224
PfeI GAWTC 2 cut(s) 1232, 1409
PinAI ACCGGT 1 cut(s) 814
PkrI GCNGC 3 cut(s) 82, 140, 924
Ppu21I YACGTR 1 cut(s) 105
PshBI ATTAAT 1 cut(s) 1602
PspFI CCCAGC 1 cut(s) 522
PspN4I GGNNCC 4 cut(s) 207, 531, 587, 1727
PspPI GGNCC 2 cut(s) 178, 585
PstI CTGCAG 1 cut(s) 902
PsuI RGATCY 3 cut(s) 205, 529, 558
PteI GCGCGC 1 cut(s) 382
RsaI GTAC 4 cut(s) 107, 285, 1615, 1727
RsaNI GTAC 4 cut(s) 106, 284, 1614, 1726
RseI CAYNNNNRTG 2 cut(s) 133, 596
SapI GCTCTTC 2 cut(s) 2, 1354
SaqAI TTAA 3 cut(s) 977, 1095, 1602
SatI GCNGC 3 cut(s) 81, 139, 923
Sau3AI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
Sau96I GGNCC 2 cut(s) 178, 585
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 964
SfcI CTRYAG 1 cut(s) 898
SinI GGWCC 2 cut(s) 178, 585
SmiMI CAYNNNNRTG 2 cut(s) 133, 596
Sse9I AATT 7 cut(s) 55, 167, 415, 476, 1599, 1654, 1733
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 8 cut(s) 138, 238, 565, 589, 754, 922, 961, 1076
SspI AATATT 1 cut(s) 1239
SspMI CTAG 4 cut(s) 278, 1695, 1721, 1744
StuI AGGCCT 1 cut(s) 45
StyI CCWWGG 1 cut(s) 1251
TaaI ACNGT 2 cut(s) 1511, 1644
TaiI ACGT 2 cut(s) 107, 1390
TaqI TCGA 3 cut(s) 48, 450, 672
TasI AATT 7 cut(s) 55, 167, 415, 476, 1599, 1654, 1733
TauI GCSGC 2 cut(s) 141, 925
TfiI GAWTC 2 cut(s) 1232, 1409
Tru1I TTAA 3 cut(s) 977, 1095, 1602
Tru9I TTAA 3 cut(s) 977, 1095, 1602
TscAI CASTG 2 cut(s) 166, 932
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 6 cut(s) 614, 1029, 1347, 1418, 1620, 1716
TspRI CASTG 2 cut(s) 166, 932
VpaK11BI GGWCC 2 cut(s) 178, 585
VspI ATTAAT 1 cut(s) 1602
XapI RAATTY 2 cut(s) 167, 415
XmiI GTMKAC 2 cut(s) 345, 1639
XmnI GAANNNNTTC 1 cut(s) 1224
XspI CTAG 4 cut(s) 278, 1695, 1721, 1744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.