FvH4_4g18280

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0002151
Physical Location & Seq
Forward (+)
22237400 .. 22239329
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18280.t1

Sequence Viewer

Length: 1410 bp
ATGGTGAAGAACGCCAAGCGCCTTAGCTACTATGAGATCTTAGGCCTCAACCCTAATTGCTCGATGGATGATGTCAGACATGCCTACCATGAACTATCCAAAATATACCACCCGGACAAATACAACTCCAGTTGCGGCATGTCCAAAGATGAAGCTTCCGTCAAGTTCCTGCAGATCAAATACGCCTACGACATCCTCAAAGAACCCGACGAGCGAGCCTTCTACGACTCCTACCTCCGGACCTACGCTGCGCTGGAGGCTTTCAACCCCGACCTCGAAACAGTCTTCGTTGAAAGCATCAACTTCAATGGCTACTCCGACTCCGGCCAAGGCTTCTACACGGTTTACTCCGACGTGTTCGACAGAATCTACGCCAACGAGCGCGCTTTTCAAGAAAGGTACGACCTGCCGTGGGGTTCTGTTCACAAACCCCCGTGCATGGGAAATCTGGAGAGCTCGTATCCTGAGGTTGTTCAGTTTTATAACTACTGGCTCAACTTTAGTTCCATAATGGACTTTTGCTGGGAGGACCCGCATGATCAGTACGATATGAGTCAGGTTTCTAGGAGAAGGGTGAAGAGGTGGTCACGTATAAACATGAAGGCTAGGAAGAAGGCGAAGAAGGAGTACAACGAGAAGATGCGGGGTTTGGCGCAGAATGCGAAGAGGCTTATTGACAGGAGGGTGAGGGTGATGGCGGCTAAGAGGGAGAAGGAGAAGAAGAGGGAGATGGAGGAAGAGAGGGAGAGGAGGAAGCGGTTGAAGAAAGAGAGGATGGAGAAGGCGGCGAGGGAGTATGAGGAGCCGGAGTGGGCCAAAGTGGTTGAGAGGAGGAGGAAATATGGTGATCCTGAGGTGGAGGAGGTAAAGGAGAAAGATGATGAATGGGAGTGTGTTGTTTGTAGGAAGGGGTTTAGGAGTGAGAAACAGTGCAGGAATCATGAGCAGTCGAAGAAACACCGTCGTATAGTTTCGGTGTTGATGGAGTTGCAATCCGCGCACCGTAATGAGCTTGATAAAGAAGAGGTTTCACAGGAAAACGAAGCAAAAAGGGATGAAGTGTTTGGAGATCTAGAGAGTCATGAAGAGTTGTCTGATGGTGCCGGTGACAATAAGAGGGAGAACTTTAGTGGAGCAGTTGGATTTGATTATGATGATGATGATGAGGAGGAGGTGGATGAGATGGAAGCTCTTCAAGCCATGGTGGCAAGGCGAAAGACTATGGAAAAGGTTGGTGAACAAGTTGTTGAACCAATGGTCGATCAGTACATGGCGATTAGTAGTGATGTGGAGAACGATGCCGATGAGGTAGCTATAAAACATGATCAGCTAAAGAACATGAATAATAGTGCAGGAGAGAGGAAACTGAAGAGAAGGAGGAGGAGGGCGAAGAATCAGAACCTGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

470

Amino Acids

55.82

Weight (kDa)

5.98

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 9 - 76 1.4e-16 DnaJ domain
ZUO1-like_ZHD PF21884 112 - 229 2.8e-15 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 296 - 321 3.8e-07 Zinc-finger double-stranded RNA-binding
zf-met PF12874 296 - 320 1.6e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 1100
AccII CGCG 2 cut(s) 384, 998
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 7 cut(s) 135, 533, 643, 698, 757, 785, 996
AclWI GGATC 1 cut(s) 842
AcoI YGGCCR 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 1388
AfaI GTAC 4 cut(s) 401, 545, 629, 1268
AfiI CCNNNNNNNGG 4 cut(s) 237, 412, 439, 440
AflIII ACRYGT 1 cut(s) 354
AgsI TTSAA 7 cut(s) 265, 293, 307, 392, 763, 1196, 1250
AjiI CACGTC 1 cut(s) 355
AluBI AGCT 7 cut(s) 27, 155, 456, 1012, 1190, 1313, 1330
AluI AGCT 7 cut(s) 27, 155, 456, 1012, 1190, 1313, 1330
Alw21I GWGCWC 1 cut(s) 458
AlwI GGATC 1 cut(s) 842
AlwNI CAGNNNCTG 1 cut(s) 1402
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 3 cut(s) 43, 325, 813
ApeKI GCWGC 1 cut(s) 248
Asp700I GAANNNNTTC 1 cut(s) 1191
AspLEI GCGC 6 cut(s) 21, 253, 384, 386, 655, 1000
AspS9I GGNCC 3 cut(s) 240, 529, 813
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 7 cut(s) 16, 586, 697, 703, 857, 1118, 1247
AvaII GGWCC 2 cut(s) 240, 529
AxyI CCTNAGG 2 cut(s) 465, 852
BanI GGYRCC 1 cut(s) 1100
BanII GRGCYC 1 cut(s) 458
BarI GAAGNNNNNNTAC 2 cut(s) 611, 643
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 1 cut(s) 235
BccI CCATC 7 cut(s) 58, 688, 724, 769, 976, 1091, 1177
BceAI ACGGC 1 cut(s) 394
BciVI GTATCC 1 cut(s) 471
BclI TGATCA 2 cut(s) 538, 1324
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 3 cut(s) 564, 606, 1073
BfmI CTRYAG 1 cut(s) 170
BfoI RGCGCY 1 cut(s) 22
BfuAI ACCTGC 1 cut(s) 414
BfuI GTATCC 1 cut(s) 471
BglI GCCNNNNNGGC 1 cut(s) 1205
BglII AGATCT 2 cut(s) 36, 1069
BisI GCNGC 4 cut(s) 136, 249, 699, 786
BlsI GCNGC 4 cut(s) 137, 250, 700, 787
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 240, 529
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 3 cut(s) 240, 529, 813
BmiI GGNNCC 3 cut(s) 531, 804, 1102
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 3 cut(s) 306, 630, 1288
BpiI GAAGAC 1 cut(s) 277
BpmI CTGGAG 3 cut(s) 112, 275, 470
Bpu10I CCTNAGC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 590
BsaJI CCNNGG 3 cut(s) 328, 410, 1200
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 6 cut(s) 305, 335, 443, 473, 794, 824
Bsc4I CCNNNNNNNGG 4 cut(s) 237, 412, 439, 440
Bse118I RCCGGY 1 cut(s) 1103
Bse1I ACTGG 2 cut(s) 129, 494
Bse21I CCTNAGG 2 cut(s) 465, 852
BseAI TCCGGA 1 cut(s) 237
BseDI CCNNGG 3 cut(s) 328, 410, 1200
BseGI GGATG 5 cut(s) 73, 192, 780, 1060, 1183
BseLI CCNNNNNNNGG 4 cut(s) 237, 412, 439, 440
BseMII CTCAG 2 cut(s) 456, 843
BseNI ACTGG 2 cut(s) 129, 494
BsePI GCGCGC 1 cut(s) 382
BseRI GAGGAG 9 cut(s) 763, 815, 844, 847, 875, 1181, 1184, 1393, 1396
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 2 cut(s) 952, 1371
Bsh1236I CGCG 2 cut(s) 384, 998
BshFI GGCC 3 cut(s) 45, 327, 815
BshNI GGYRCC 1 cut(s) 1100
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 5 cut(s) 113, 238, 324, 806, 1104
BslI CCNNNNNNNGG 4 cut(s) 237, 412, 439, 440
BsmI GAATGC 1 cut(s) 664
BsnI GGCC 3 cut(s) 45, 327, 815
Bsp1286I GDGCHC 1 cut(s) 458
Bsp13I TCCGGA 1 cut(s) 237
Bsp143I GATC 7 cut(s) 36, 174, 538, 847, 1069, 1261, 1324
Bsp19I CCATGG 1 cut(s) 1200
BspACI CCGC 7 cut(s) 135, 533, 643, 698, 757, 785, 996
BspANI GGCC 3 cut(s) 45, 327, 815
BspCNI CTCAG 2 cut(s) 457, 844
BspEI TCCGGA 1 cut(s) 237
BspFNI CGCG 2 cut(s) 384, 998
BspHI TCATGA 2 cut(s) 940, 1081
BspLI GGNNCC 3 cut(s) 531, 804, 1102
BspMAI CTGCAG 1 cut(s) 174
BspMI ACCTGC 1 cut(s) 414
BspPI GGATC 1 cut(s) 842
BspQI GCTCTTC 1 cut(s) 1197
BspT107I GGYRCC 1 cut(s) 1100
BsrFI RCCGGY 1 cut(s) 1103
BsrI ACTGG 2 cut(s) 129, 494
BssAI RCCGGY 1 cut(s) 1103
BssECI CCNNGG 3 cut(s) 328, 410, 1200
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 7 cut(s) 36, 174, 538, 847, 1069, 1261, 1324
BssT1I CCWWGG 2 cut(s) 328, 1200
Bst4CI ACNGT 5 cut(s) 283, 343, 930, 962, 1004
Bst6I CTCTTC 8 cut(s) 572, 659, 716, 732, 1017, 1080, 1197, 1364
BstBAI YACGTR 1 cut(s) 590
BstC8I GCNNGC 2 cut(s) 216, 384
BstDEI CTNAG 5 cut(s) 23, 40, 465, 702, 852
BstDSI CCRYGG 2 cut(s) 410, 1200
BstF5I GGATG 5 cut(s) 73, 192, 780, 1060, 1183
BstFNI CGCG 2 cut(s) 384, 998
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 6 cut(s) 21, 253, 384, 386, 655, 1000
BstKTI GATC 7 cut(s) 39, 177, 541, 850, 1072, 1264, 1327
BstMBI GATC 7 cut(s) 36, 174, 538, 847, 1069, 1261, 1324
BstMWI GCNNNNNNNGC 5 cut(s) 257, 659, 997, 1196, 1205
BstNSI RCATGY 2 cut(s) 83, 142
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 170
BstUI CGCG 2 cut(s) 384, 998
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 277
BstX2I RGATCY 2 cut(s) 36, 1069
BstYI RGATCY 2 cut(s) 36, 1069
Bsu36I CCTNAGG 2 cut(s) 465, 852
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 3 cut(s) 45, 327, 815
BtgI CCRYGG 2 cut(s) 410, 1200
BtrI CACGTC 1 cut(s) 355
BtsCI GGATG 5 cut(s) 73, 192, 780, 1060, 1183
BtsIMutI CAGTG 1 cut(s) 935
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 216, 384
CaiI CAGNNNCTG 1 cut(s) 1402
CciI TCATGA 2 cut(s) 940, 1081
CfoI GCGC 6 cut(s) 21, 253, 384, 386, 655, 1000
Cfr10I RCCGGY 1 cut(s) 1103
Cfr13I GGNCC 3 cut(s) 240, 529, 813
Csp6I GTAC 4 cut(s) 400, 544, 628, 1267
CviQI GTAC 4 cut(s) 400, 544, 628, 1267
DdeI CTNAG 5 cut(s) 23, 40, 465, 702, 852
DpnI GATC 7 cut(s) 38, 176, 540, 849, 1071, 1263, 1326
DpnII GATC 7 cut(s) 36, 174, 538, 847, 1069, 1261, 1324
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 8 cut(s) 572, 659, 716, 732, 1017, 1080, 1197, 1364
EarI CTCTTC 8 cut(s) 572, 659, 716, 732, 1017, 1080, 1197, 1364
Ecl136II GAGCTC 1 cut(s) 456
Eco130I CCWWGG 2 cut(s) 328, 1200
Eco147I AGGCCT 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 458
Eco47I GGWCC 2 cut(s) 240, 529
Eco53kI GAGCTC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 1388
Eco81I CCTNAGG 2 cut(s) 465, 852
EcoICRI GAGCTC 1 cut(s) 456
EcoO109I RGGNCCY 1 cut(s) 529
EcoT14I CCWWGG 2 cut(s) 328, 1200
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 2 cut(s) 328, 1200
FauI CCCGC 2 cut(s) 540, 636
FbaI TGATCA 2 cut(s) 538, 1324
Fnu4HI GCNGC 4 cut(s) 136, 249, 699, 786
FokI GGATG 5 cut(s) 80, 179, 787, 1067, 1190
FriOI GRGCYC 1 cut(s) 458
Fsp4HI GCNGC 4 cut(s) 136, 249, 699, 786
FspBI CTAG 3 cut(s) 564, 606, 1073
GlaI GCGC 6 cut(s) 20, 252, 383, 385, 654, 999
GluI GCNGC 4 cut(s) 136, 249, 699, 786
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 3 cut(s) 112, 275, 470
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 3 cut(s) 45, 327, 815
HapII CCGG 5 cut(s) 113, 238, 324, 806, 1104
HhaI GCGC 6 cut(s) 21, 253, 384, 386, 655, 1000
Hin6I GCGC 6 cut(s) 19, 251, 382, 384, 653, 998
HinP1I GCGC 6 cut(s) 19, 251, 382, 384, 653, 998
HindIII AAGCTT 1 cut(s) 153
HinfI GANTC 7 cut(s) 227, 320, 366, 553, 937, 1078, 1393
HpaII CCGG 5 cut(s) 113, 238, 324, 806, 1104
HphI GGTGA 7 cut(s) 16, 586, 697, 703, 857, 1118, 1247
Hpy166II GTNNAC 3 cut(s) 346, 424, 1238
Hpy188I TCNGA 5 cut(s) 77, 319, 352, 1096, 1398
Hpy188III TCNNGA 8 cut(s) 238, 392, 449, 464, 851, 941, 1073, 1082
Hpy8I GTNNAC 3 cut(s) 346, 424, 1238
Hpy99I CGWCG 3 cut(s) 212, 356, 966
HpyAV CCTTC 9 cut(s) 229, 564, 595, 607, 616, 706, 775, 901, 1368
HpyCH4III ACNGT 5 cut(s) 283, 343, 930, 962, 1004
HpyCH4IV ACGT 2 cut(s) 354, 589
HpyCH4V TGCA 5 cut(s) 172, 438, 933, 991, 1352
HpyF10VI GCNNNNNNNGC 5 cut(s) 257, 659, 997, 1196, 1205
HpyF3I CTNAG 5 cut(s) 23, 40, 465, 702, 852
HpySE526I ACGT 2 cut(s) 354, 589
HspAI GCGC 6 cut(s) 19, 251, 382, 384, 653, 998
Kpn2I TCCGGA 1 cut(s) 237
Ksp22I TGATCA 2 cut(s) 538, 1324
Kzo9I GATC 7 cut(s) 36, 174, 538, 847, 1069, 1261, 1324
LguI GCTCTTC 1 cut(s) 1197
LmnI GCTCC 2 cut(s) 802, 1133
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 3 cut(s) 306, 630, 1288
MaeI CTAG 3 cut(s) 564, 606, 1073
MaeII ACGT 2 cut(s) 354, 589
MaeIII GTNAC 2 cut(s) 585, 1106
MalI GATC 7 cut(s) 38, 176, 540, 849, 1071, 1263, 1326
MboI GATC 7 cut(s) 36, 174, 538, 847, 1069, 1261, 1324
MflI RGATCY 2 cut(s) 36, 1069
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 1 cut(s) 55
MlyI GAGTC 4 cut(s) 221, 314, 562, 1087
MmeI TCCRAC 3 cut(s) 342, 375, 1120
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 1191
MslI CAYNNNNRTG 1 cut(s) 1005
MspI CCGG 5 cut(s) 113, 238, 324, 806, 1104
MspR9I CCNGG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 664
MvnI CGCG 2 cut(s) 384, 998
MwoI GCNNNNNNNGC 5 cut(s) 257, 659, 997, 1196, 1205
NciI CCSGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 1200
NdeII GATC 7 cut(s) 36, 174, 538, 847, 1069, 1261, 1324
NlaIV GGNNCC 3 cut(s) 531, 804, 1102
NmuCI GTSAC 2 cut(s) 585, 1106
NspI RCATGY 2 cut(s) 83, 142
PagI TCATGA 2 cut(s) 940, 1081
PauI GCGCGC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 1197
PctI GAATGC 1 cut(s) 664
PdmI GAANNNNTTC 1 cut(s) 1191
PfeI GAWTC 3 cut(s) 366, 937, 1393
PkrI GCNGC 4 cut(s) 137, 250, 700, 787
PleI GAGTC 4 cut(s) 221, 314, 561, 1086
PpsI GAGTC 4 cut(s) 221, 314, 561, 1086
Ppu21I YACGTR 1 cut(s) 590
PpuMI RGGWCCY 1 cut(s) 529
PsiI TTATAA 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 458
Psp5II RGGWCCY 1 cut(s) 529
PspFI CCCAGC 1 cut(s) 522
PspN4I GGNNCC 3 cut(s) 531, 804, 1102
PspPI GGNCC 3 cut(s) 240, 529, 813
PspPPI RGGWCCY 1 cut(s) 529
PstI CTGCAG 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 1402
PsuI RGATCY 2 cut(s) 36, 1069
PteI GCGCGC 1 cut(s) 382
RsaI GTAC 4 cut(s) 401, 545, 629, 1268
RsaNI GTAC 4 cut(s) 400, 544, 628, 1267
RseI CAYNNNNRTG 1 cut(s) 1005
SacI GAGCTC 1 cut(s) 458
SapI GCTCTTC 1 cut(s) 1197
SatI GCNGC 4 cut(s) 136, 249, 699, 786
Sau3AI GATC 7 cut(s) 36, 174, 538, 847, 1069, 1261, 1324
Sau96I GGNCC 3 cut(s) 240, 529, 813
SchI GAGTC 4 cut(s) 221, 314, 562, 1087
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 3 cut(s) 306, 630, 1288
SfcI CTRYAG 1 cut(s) 170
SinI GGWCC 2 cut(s) 240, 529
SmiMI CAYNNNNRTG 1 cut(s) 1005
Sse9I AATT 1 cut(s) 55
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 7 cut(s) 135, 533, 643, 698, 757, 785, 996
SspMI CTAG 3 cut(s) 564, 606, 1073
SstI GAGCTC 1 cut(s) 458
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 2 cut(s) 328, 1200
TaaI ACNGT 5 cut(s) 283, 343, 930, 962, 1004
TaiI ACGT 2 cut(s) 357, 592
TaqI TCGA 5 cut(s) 62, 276, 360, 950, 1260
TasI AATT 1 cut(s) 55
TatI WGTACW 2 cut(s) 627, 1266
TauI GCSGC 3 cut(s) 138, 701, 788
TfiI GAWTC 3 cut(s) 366, 937, 1393
TscAI CASTG 1 cut(s) 935
TseFI GTSAC 2 cut(s) 585, 1106
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 2 cut(s) 585, 1106
TspDTI ATGAA 7 cut(s) 105, 165, 614, 897, 1071, 1098, 1355
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 1 cut(s) 935
VpaK11BI GGWCC 2 cut(s) 240, 529
XbaI TCTAGA 1 cut(s) 1072
XceI RCATGY 2 cut(s) 83, 142
XmnI GAANNNNTTC 1 cut(s) 1191
XspI CTAG 3 cut(s) 564, 606, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.