Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

17046340 .. 17047747

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTAAAGAGCACCGAGCGCGTTTGCTACTATGATACGTTAGGCCTCGAACCCAACTGCTCGATGGATGATGTCAGACATGCTTACCATGAACTGTCCAAAATATACCACCCGGACAAATACAACTCCAGTTGCGGCATGCCGAAAGATGAAGCCTCCGCCAAATTTCTAACCTACGCTGTGCCAGAGGCATTCAACCCCGACCTCGAAGCCGCCTTCGACAACATTAATTTCAACGGCTACTCCGACTCCGGCCGCGGCTTTTATAAGGTCTACTCCGACGTTTTCGACAGGATTTACGGCAATGAGCGTGCATTTCATGAAAAAAATGACCCGCCATGGGGTTCTGTTCACAACCCTCCGCGCATGGGAAATACGGACAGCCCGTATCCTGAGGTTGTTCAGTTTTATAACTACCGGCTCAACTTTAGTTCCATAATGGATTTTTGCTGGGAGGAACCGCATGATGAGTACGATTCTGAGTCAGGTCTCCCGCAGAAGAGTAAAGCTGTGGTCCGCCTAAACATGAAAGCTAGGAAGAAGGCCAAGAAGGAGTACAACAACAAGGCGGTTAGGGAGTATGAGGAGCCGGAGTGGACCAAAGTGGTTGAGATGAGAAGAAAATATGGTGATCCTGAGGAGGAGAAGGTAAAAGAGATAGAGGAATGGGAGTGTGTTGTTTGTAGGAACGGATTTAGTAGTGAGAAGCAGTGCAGAAATCACGAGCAGTTGAAGAAGCACCTTCGTATGGTTTCAGAGTTAATAGTATTGCAATCTAACCATCGTGAAATTGTTGTTGGGTCGATGGAGGACAAGAGGAATTATGAAGAGCTTGATAAAGAAGAGGTTTCGGTGAAAGCACAAGGGGATGAAGTGGTTGGAGAGAGTGATGAGTTTTCTAATTGTGTCAGTGACAATAGGTGGGAAAACTTTAGTGAAGCAGTTGAATATGCTGAGGAGGAGGAGGAGCTGGATGAGATGGATGTTCTTCTAGCCATATGGTGGCAAGGGAAAAGGCTATATATGGAAAAGGTTGGTGAAATTTTTTTTGAAGCAATGGTTGAGTACATTGCGACCAGTAGTCATGTGGATAACGATGCCGATGAGGTAGCTATAAAACATGATCAGCTAAAGCATATGAATAATAATGGAGGAGATAGGAAACCGAAGAGAAGGAGGAGGGTGAAGAGTACGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

399

Amino Acids

46.86

Weight (kDa)

5.04

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	10 - 43	1.1e-08	DnaJ domain
ZUO1-like_ZHD	PF21884	88 - 189	1.5e-10	Zuotin-like, zuotin homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	267, 411
AccB7I	CCANNNNNTGG	1 cut(s)	1002
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	3 cut(s)	21, 258, 364
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	164, 1041
AfaI	GTAC	5 cut(s)	473, 557, 1067, 1192, 1196
AfiI	CCNNNNNNNGG	5 cut(s)	340, 341, 368, 748, 1002
AgsI	TTSAA	5 cut(s)	196, 235, 733, 947, 1052
AhdI	GACNNNNNGTC	1 cut(s)	1080
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
AluBI	AGCT	6 cut(s)	509, 533, 832, 970, 1112, 1129
AluI	AGCT	6 cut(s)	509, 533, 832, 970, 1112, 1129
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	3 cut(s)	43, 253, 543
ApoI	RAATTY	2 cut(s)	164, 1041
AseI	ATTAAT	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	21, 366
AspS9I	GGNCC	2 cut(s)	514, 597
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	4 cut(s)	641, 865, 1049, 1195
AvaII	GGWCC	2 cut(s)	514, 597
AxyI	CCTNAGG	2 cut(s)	393, 636
BarI	GAAGNNNNNNTAC	1 cut(s)	1178
BauI	CACGAG	1 cut(s)	722
Bbv12I	GWGCWC	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	954
BccI	CCATC	4 cut(s)	58, 789, 799, 973
BceAI	ACGGC	2 cut(s)	253, 316
BciVI	GTATCC	1 cut(s)	399
BclI	TGATCA	1 cut(s)	1123
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	3 cut(s)	534, 992, 1198
BfuI	GTATCC	1 cut(s)	399
BisI	GCNGC	4 cut(s)	136, 213, 256, 259
BlsI	GCNGC	4 cut(s)	137, 214, 257, 260
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	2 cut(s)	514, 597
BmeRI	GACNNNNNGTC	1 cut(s)	1080
BmgT120I	GGNCC	2 cut(s)	514, 597
BmiI	GGNNCC	2 cut(s)	459, 588
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	1087
BpmI	CTGGAG	1 cut(s)	112
Bpu10I	CCTNAGC	1 cut(s)	954
BpuMI	CCSGG	1 cut(s)	113
BsaAI	YACGTR	1 cut(s)	1194
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	2 cut(s)	256, 338
BsaXI	ACNNNNNCTCC	6 cut(s)	227, 233, 257, 263, 578, 608
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 341, 368, 748, 1002
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	129, 1077
Bse21I	CCTNAGG	2 cut(s)	393, 636
Bse3DI	GCAATG	3 cut(s)	310, 1062, 1068
BseDI	CCNNGG	2 cut(s)	256, 338
BseGI	GGATG	4 cut(s)	73, 874, 979, 988
BseLI	CCNNNNNNNGG	5 cut(s)	340, 341, 368, 748, 1002
BseMI	GCAATG	3 cut(s)	310, 1062, 1068
BseMII	CTCAG	4 cut(s)	384, 471, 627, 945
BseNI	ACTGG	2 cut(s)	129, 1077
BseRI	GAGGAG	9 cut(s)	599, 653, 656, 971, 974, 977, 980, 1167, 1192
BseX3I	CGGCCG	1 cut(s)	253
BseYI	CCCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	733
Bsh1236I	CGCG	3 cut(s)	21, 258, 364
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	3 cut(s)	45, 255, 545
BsiEI	CGRYCG	1 cut(s)	256
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	4 cut(s)	113, 252, 418, 590
BslI	CCNNNNNNNGG	5 cut(s)	340, 341, 368, 748, 1002
BsmAI	GTCTC	1 cut(s)	494
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	45, 255, 545
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	631, 1123
Bsp19I	CCATGG	1 cut(s)	338
BspANI	GGCC	3 cut(s)	45, 255, 545
BspCNI	CTCAG	4 cut(s)	385, 472, 628, 946
BspFNI	CGCG	3 cut(s)	21, 258, 364
BspHI	TCATGA	1 cut(s)	319
BspLI	GGNNCC	2 cut(s)	459, 588
BspPI	GGATC	1 cut(s)	626
BspQI	GCTCTTC	1 cut(s)	822
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	3 cut(s)	310, 1062, 1068
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	2 cut(s)	129, 1077
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	256, 338
BssMI	GATC	2 cut(s)	631, 1123
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	722
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	5 cut(s)	494, 822, 837, 1163, 1181
BstBAI	YACGTR	1 cut(s)	1194
BstC8I	GCNNGC	2 cut(s)	140, 312
BstDEI	CTNAG	4 cut(s)	393, 480, 636, 954
BstDSI	CCRYGG	2 cut(s)	256, 338
BstF5I	GGATG	4 cut(s)	73, 874, 979, 988
BstFNI	CGCG	3 cut(s)	21, 258, 364
BstHHI	GCGC	2 cut(s)	21, 366
BstKTI	GATC	2 cut(s)	634, 1126
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	2 cut(s)	631, 1123
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNSI	RCATGY	2 cut(s)	83, 142
BstSCI	CCNGG	1 cut(s)	111
BstSNI	TACGTA	1 cut(s)	1194
BstUI	CGCG	3 cut(s)	21, 258, 364
BstZI	CGGCCG	1 cut(s)	253
Bsu36I	CCTNAGG	2 cut(s)	393, 636
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	3 cut(s)	45, 255, 545
BtgI	CCRYGG	2 cut(s)	256, 338
BtsCI	GGATG	4 cut(s)	73, 874, 979, 988
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	2 cut(s)	716, 916
Cac8I	GCNNGC	2 cut(s)	140, 312
CciI	TCATGA	1 cut(s)	319
CfoI	GCGC	2 cut(s)	21, 366
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	514, 597
Cfr42I	CCGCGG	1 cut(s)	259
Csp6I	GTAC	5 cut(s)	472, 556, 1066, 1191, 1195
CviQI	GTAC	5 cut(s)	472, 556, 1066, 1191, 1195
DdeI	CTNAG	4 cut(s)	393, 480, 636, 954
DpnI	GATC	2 cut(s)	633, 1125
DpnII	GATC	2 cut(s)	631, 1123
DriI	GACNNNNNGTC	1 cut(s)	1080
EaeI	YGGCCR	1 cut(s)	253
EagI	CGGCCG	1 cut(s)	253
Eam1104I	CTCTTC	5 cut(s)	494, 822, 837, 1163, 1181
Eam1105I	GACNNNNNGTC	1 cut(s)	1080
EarI	CTCTTC	5 cut(s)	494, 822, 837, 1163, 1181
EciI	GGCGGA	2 cut(s)	148, 506
EclXI	CGGCCG	1 cut(s)	253
Eco105I	TACGTA	1 cut(s)	1194
Eco130I	CCWWGG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	2 cut(s)	514, 597
Eco52I	CGGCCG	1 cut(s)	253
Eco81I	CCTNAGG	2 cut(s)	393, 636
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FauI	CCCGC	2 cut(s)	342, 501
FauNDI	CATATG	2 cut(s)	998, 1137
FbaI	TGATCA	1 cut(s)	1123
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	136, 213, 256, 259
FokI	GGATG	4 cut(s)	80, 881, 986, 995
Fsp4HI	GCNGC	4 cut(s)	136, 213, 256, 259
FspBI	CTAG	3 cut(s)	534, 992, 1198
GlaI	GCGC	2 cut(s)	20, 365
GluI	GCNGC	4 cut(s)	136, 213, 256, 259
GsaI	CCCAGC	1 cut(s)	454
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	3 cut(s)	45, 255, 545
HapII	CCGG	4 cut(s)	113, 252, 418, 590
HhaI	GCGC	2 cut(s)	21, 366
Hin6I	GCGC	2 cut(s)	19, 364
HinP1I	GCGC	2 cut(s)	19, 364
HinfI	GANTC	3 cut(s)	248, 476, 482
HpaII	CCGG	4 cut(s)	113, 252, 418, 590
HphI	GGTGA	4 cut(s)	641, 865, 1049, 1195
Hpy166II	GTNNAC	3 cut(s)	274, 352, 597
Hpy188I	TCNGA	5 cut(s)	77, 247, 280, 481, 757
Hpy188III	TCNNGA	5 cut(s)	320, 392, 635, 722, 785
Hpy8I	GTNNAC	3 cut(s)	274, 352, 597
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	6 cut(s)	226, 535, 544, 640, 752, 1167
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	3 cut(s)	38, 282, 1193
HpyCH4V	TGCA	3 cut(s)	314, 714, 772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	4 cut(s)	393, 480, 636, 954
HpySE526I	ACGT	3 cut(s)	38, 282, 1193
HspAI	GCGC	2 cut(s)	19, 364
Ksp22I	TGATCA	1 cut(s)	1123
KspI	CCGCGG	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	631, 1123
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	2 cut(s)	586, 967
LweI	GCATC	1 cut(s)	1087
MaeI	CTAG	3 cut(s)	534, 992, 1198
MaeII	ACGT	3 cut(s)	38, 282, 1193
MaeIII	GTNAC	1 cut(s)	911
MalI	GATC	2 cut(s)	633, 1125
MboI	GATC	2 cut(s)	631, 1123
MboII	GAAGA	9 cut(s)	511, 550, 630, 745, 839, 854, 980, 1180, 1198
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	6 cut(s)	164, 229, 789, 820, 901, 1041
MlyI	GAGTC	2 cut(s)	242, 491
MmeI	TCCRAC	3 cut(s)	270, 303, 859
MseI	TTAA	2 cut(s)	228, 761
MspA1I	CMGCKG	1 cut(s)	258
MspI	CCGG	4 cut(s)	113, 252, 418, 590
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	191
MvnI	CGCG	3 cut(s)	21, 258, 364
MwoI	GCNNNNNNNGC	1 cut(s)	18
NciI	CCSGG	1 cut(s)	113
NcoI	CCATGG	1 cut(s)	338
NdeI	CATATG	2 cut(s)	998, 1137
NdeII	GATC	2 cut(s)	631, 1123
NlaIV	GGNNCC	2 cut(s)	459, 588
NmuCI	GTSAC	1 cut(s)	911
NspI	RCATGY	2 cut(s)	83, 142
PaeI	GCATGC	1 cut(s)	142
PagI	TCATGA	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 383
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	476
PflMI	CCANNNNNTGG	1 cut(s)	1002
PkrI	GCNGC	4 cut(s)	137, 214, 257, 260
PleI	GAGTC	2 cut(s)	242, 490
PpsI	GAGTC	2 cut(s)	242, 490
Ppu21I	YACGTR	1 cut(s)	1194
PshBI	ATTAAT	1 cut(s)	228
PsiI	TTATAA	2 cut(s)	267, 411
PspFI	CCCAGC	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	459, 588
PspPI	GGNCC	2 cut(s)	514, 597
RsaI	GTAC	5 cut(s)	473, 557, 1067, 1192, 1196
RsaNI	GTAC	5 cut(s)	472, 556, 1066, 1191, 1195
SacII	CCGCGG	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	2 cut(s)	228, 761
SatI	GCNGC	4 cut(s)	136, 213, 256, 259
Sau3AI	GATC	2 cut(s)	631, 1123
Sau96I	GGNCC	2 cut(s)	514, 597
SchI	GAGTC	2 cut(s)	242, 491
ScrFI	CCNGG	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	1087
Sfr303I	CCGCGG	1 cut(s)	259
SgrBI	CCGCGG	1 cut(s)	259
SinI	GGWCC	2 cut(s)	514, 597
SnaBI	TACGTA	1 cut(s)	1194
SphI	GCATGC	1 cut(s)	142
Sse9I	AATT	6 cut(s)	164, 229, 789, 820, 901, 1041
SseBI	AGGCCT	1 cut(s)	45
SspMI	CTAG	3 cut(s)	534, 992, 1198
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	3 cut(s)	41, 285, 1196
TaqI	TCGA	6 cut(s)	48, 62, 207, 219, 288, 803
TasI	AATT	6 cut(s)	164, 229, 789, 820, 901, 1041
TatI	WGTACW	2 cut(s)	555, 1065
TauI	GCSGC	4 cut(s)	138, 215, 258, 261
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	2 cut(s)	228, 761
Tru9I	TTAA	2 cut(s)	228, 761
TscAI	CASTG	2 cut(s)	716, 916
TseFI	GTSAC	1 cut(s)	911
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	8 cut(s)	105, 165, 308, 336, 542, 840, 885, 1154
TspGWI	ACGGA	2 cut(s)	392, 705
TspRI	CASTG	2 cut(s)	716, 916
Van91I	CCANNNNNTGG	1 cut(s)	1002
VpaK11BI	GGWCC	2 cut(s)	514, 597
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	2 cut(s)	164, 1041
XceI	RCATGY	2 cut(s)	83, 142
XcmI	CCANNNNNNNNNTGG	2 cut(s)	61, 1084
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	3 cut(s)	534, 992, 1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.