RLG00000003685

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002151
Physical Location & Seq
Forward (+)
51658413 .. 51659793
1381 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003685

Sequence Viewer

Length: 1218 bp
ATGAGCGAGCCTTCTACGACTCCTACCTCCAGACCTACGCTGTGCCAGAGGCCTTCAACCCCGACCTCGAAGCCGCCTTCGACAACATCGACTTCAACGGCTACTCCGACTCCAGCCGCGGCTTCTATAAGCCCTCCGCGCATGGGAAATCTGGACAGCCCGTATCCTGAGGTTGTTCAGTTTTATAACTACTGGCTCAACTTTAGTTCCATTATGGATTTTTGCTGGGAAGAACCGCATGATGAGTACGATCTGAGTCAGGTCTCCCGGAGAAGAGTGAAGCTGTGGTCCCGCCAAAACATGAAAGCTAGGAAGAAGGCCAAGAAGGAGTACAACAACAAGGTGCGGAGTTTGGCAAAAAATTCCAAGAGGCTTGACAGGAGGGTTATGCAGATGACGGCGAAGAGGGAGGAGGAGAGAAAGAGGGAGATGGAAGAGGATAGCGAGAGGAGGGAGTACGAGGAGCCGGAGTGGACCAAAGTGGTTGAGAGAAGGAGAAAATATGGTGATCCTGAGGAGGAGAAAATAAAGGAGATAGAGGAATGGGAGTGTGTTGTTTGTAGGAAGGGATTTAGGAGTGAGAAGCAGGTTTCAGAGTTAATAGAGTTGCAATCTAACCATCGTGAAATTGTTGTTGAGTCGATGGAGGACAAGAGGGATTACGAAGAGCTTGATAAAGAAGAGGTTTCGGTGAAAGCAAAAGGGGATGAAGTGGCTGGAGAGAGTGATGAGTTTTCTGATTGTGTCAGTGACAATAGGTGGGAAAACTTTAGTGAAGCAGTTAAATATGATGATGAGGAGGAGGAGGTGGTGGATGAGATGGGTGTTCTTCTAGCCATGGTGGCAAAGCAAAAGACTATGGAAAAGGTTGGTGAACAAGTTTTTGAAGCAATGGTTGAGTACATGGCGACCGGTAGTCATATGGATAACGATGCCGATGAGGTAGCCATAAAACATGATCAGCTAAAGCAAATGAATAATAATGGAGGAGACAGGAAACCGAAGAGAAGGAGGAGGGTGAAGAGTACTAAAACTAACCAACTTGATTGTTCAAACAGAAAGGAACCAAAACCTGATTCTAGTGTAGCAAAAGGAGATGATGATGAAATTCAGCAGAAAGGACGGAAAAAAAAAGATCGGAGGAGCAAGAAGAGTAAAAGTAGAGAGATAAAGAGCAGAATAAAAGGAATGGAGGAGAGAGGATGGGAAGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

406

Amino Acids

47.45

Weight (kDa)

6.12

Isoelectric Point (pI)

68.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZUO1-like_ZHD PF21884 46 - 129 6.6e-16 Zuotin-like, zuotin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 577
AccII CGCG 2 cut(s) 119, 139
AciI CCGC 7 cut(s) 74, 117, 119, 137, 236, 292, 346
AclWI GGATC 1 cut(s) 503
AcsI RAATTY 2 cut(s) 361, 1107
AfaI GTAC 5 cut(s) 248, 332, 458, 902, 1027
AfiI CCNNNNNNNGG 1 cut(s) 143
AgeI ACCGGT 1 cut(s) 911
AgsI TTSAA 4 cut(s) 57, 96, 887, 1053
AhdI GACNNNNNGTC 1 cut(s) 915
AjuI GAANNNNNNNTTGG 2 cut(s) 1060, 1092
AluBI AGCT 4 cut(s) 283, 308, 670, 964
AluI AGCT 4 cut(s) 283, 308, 670, 964
Alw26I GTCTC 2 cut(s) 268, 984
AlwI GGATC 1 cut(s) 503
AoxI GGCC 2 cut(s) 50, 318
ApoI RAATTY 2 cut(s) 361, 1107
AsiGI ACCGGT 1 cut(s) 911
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 2 cut(s) 288, 474
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 4 cut(s) 518, 703, 884, 1030
AvaII GGWCC 2 cut(s) 288, 474
AxyI CCTNAGG 2 cut(s) 168, 513
BccI CCATC 5 cut(s) 424, 627, 637, 814, 1197
BceAI ACGGC 2 cut(s) 114, 414
BciVI GTATCC 1 cut(s) 174
BclI TGATCA 1 cut(s) 958
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 2 cut(s) 268, 984
BfaI CTAG 3 cut(s) 309, 833, 1080
BfuAI ACCTGC 1 cut(s) 577
BfuI GTATCC 1 cut(s) 174
BglI GCCNNNNNGGC 1 cut(s) 842
BisI GCNGC 3 cut(s) 74, 117, 120
BlsI GCNGC 3 cut(s) 75, 118, 121
BmcAI AGTACT 1 cut(s) 1027
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 2 cut(s) 288, 474
BmeRI GACNNNNNGTC 1 cut(s) 915
BmgT120I GGNCC 2 cut(s) 288, 474
BmiI GGNNCC 3 cut(s) 290, 465, 1065
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 1 cut(s) 922
BpmI CTGGAG 3 cut(s) 13, 96, 738
BpuMI CCSGG 1 cut(s) 268
BsaI GGTCTC 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 117, 837
BsaWI WCCGGW 1 cut(s) 911
BsaXI ACNNNNNCTCC 6 cut(s) 88, 94, 118, 124, 455, 485
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 911
Bse1I ACTGG 1 cut(s) 197
Bse21I CCTNAGG 2 cut(s) 168, 513
Bse3DI GCAATG 1 cut(s) 897
BseDI CCNNGG 2 cut(s) 117, 837
BseGI GGATG 3 cut(s) 712, 820, 1208
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 3 cut(s) 159, 245, 504
BseNI ACTGG 1 cut(s) 197
BseYI CCCAGC 1 cut(s) 225
Bsh1236I CGCG 2 cut(s) 119, 139
Bsh1285I CGRYCG 1 cut(s) 912
BshFI GGCC 2 cut(s) 52, 320
BshTI ACCGGT 1 cut(s) 911
BsiEI CGRYCG 1 cut(s) 912
BsiSI CCGG 3 cut(s) 268, 467, 912
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 268, 984
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 2 cut(s) 52, 320
Bso31I GGTCTC 1 cut(s) 268
Bsp143I GATC 4 cut(s) 250, 508, 958, 1135
Bsp19I CCATGG 1 cut(s) 837
BspACI CCGC 7 cut(s) 74, 117, 119, 137, 236, 292, 346
BspANI GGCC 2 cut(s) 52, 320
BspCNI CTCAG 3 cut(s) 160, 246, 505
BspFNI CGCG 2 cut(s) 119, 139
BspLI GGNNCC 3 cut(s) 290, 465, 1065
BspMI ACCTGC 1 cut(s) 577
BspPI GGATC 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 660
BspTNI GGTCTC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 897
BsrFI RCCGGY 1 cut(s) 911
BsrI ACTGG 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 911
BssECI CCNNGG 2 cut(s) 117, 837
BssMI GATC 4 cut(s) 250, 508, 958, 1135
BssT1I CCWWGG 1 cut(s) 837
Bst6I CTCTTC 9 cut(s) 268, 398, 429, 660, 675, 998, 1016, 1145, 1203
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 3 cut(s) 168, 254, 513
BstDSI CCRYGG 2 cut(s) 117, 837
BstF5I GGATG 3 cut(s) 712, 820, 1208
BstFNI CGCG 2 cut(s) 119, 139
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 4 cut(s) 253, 511, 961, 1138
BstMAI GTCTC 2 cut(s) 268, 984
BstMBI GATC 4 cut(s) 250, 508, 958, 1135
BstMCI CGRYCG 1 cut(s) 912
BstMWI GCNNNNNNNGC 2 cut(s) 138, 842
BstSCI CCNGG 1 cut(s) 266
BstUI CGCG 2 cut(s) 119, 139
Bsu36I CCTNAGG 2 cut(s) 168, 513
BsuI GTATCC 1 cut(s) 174
BsuRI GGCC 2 cut(s) 52, 320
BtgI CCRYGG 2 cut(s) 117, 837
BtsCI GGATG 3 cut(s) 712, 820, 1208
BtsIMutI CAGTG 1 cut(s) 754
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 1 cut(s) 8
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 911
Cfr13I GGNCC 2 cut(s) 288, 474
Cfr42I CCGCGG 1 cut(s) 120
Csp6I GTAC 5 cut(s) 247, 331, 457, 901, 1026
CspAI ACCGGT 1 cut(s) 911
CviAII CATG 6 cut(s) 142, 239, 301, 838, 904, 956
CviQI GTAC 5 cut(s) 247, 331, 457, 901, 1026
DdeI CTNAG 3 cut(s) 168, 254, 513
DpnI GATC 4 cut(s) 252, 510, 960, 1137
DpnII GATC 4 cut(s) 250, 508, 958, 1135
DriI GACNNNNNGTC 1 cut(s) 915
Eam1104I CTCTTC 9 cut(s) 268, 398, 429, 660, 675, 998, 1016, 1145, 1203
Eam1105I GACNNNNNGTC 1 cut(s) 915
EarI CTCTTC 9 cut(s) 268, 398, 429, 660, 675, 998, 1016, 1145, 1203
Eco130I CCWWGG 1 cut(s) 837
Eco147I AGGCCT 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 288, 474
Eco81I CCTNAGG 2 cut(s) 168, 513
EcoT14I CCWWGG 1 cut(s) 837
ErhI CCWWGG 1 cut(s) 837
FaeI CATG 6 cut(s) 145, 242, 304, 841, 907, 959
FaqI GGGAC 1 cut(s) 274
FatI CATG 6 cut(s) 141, 238, 300, 837, 903, 955
FauI CCCGC 1 cut(s) 299
FauNDI CATATG 1 cut(s) 921
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 3 cut(s) 74, 117, 120
FokI GGATG 2 cut(s) 719, 827
Fsp4HI GCNGC 3 cut(s) 74, 117, 120
FspBI CTAG 3 cut(s) 309, 833, 1080
GlaI GCGC 1 cut(s) 140
GluI GCNGC 3 cut(s) 74, 117, 120
GsaI CCCAGC 1 cut(s) 229
GsuI CTGGAG 3 cut(s) 13, 96, 738
HaeIII GGCC 2 cut(s) 52, 320
HapII CCGG 3 cut(s) 268, 467, 912
HhaI GCGC 1 cut(s) 141
Hin1II CATG 6 cut(s) 145, 242, 304, 841, 907, 959
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 5 cut(s) 19, 109, 256, 638, 1076
HpaII CCGG 3 cut(s) 268, 467, 912
HphI GGTGA 4 cut(s) 518, 703, 884, 1030
Hpy166II GTNNAC 2 cut(s) 474, 875
Hpy188I TCNGA 5 cut(s) 108, 255, 595, 739, 1140
Hpy188III TCNNGA 5 cut(s) 30, 152, 167, 512, 623
Hpy8I GTNNAC 2 cut(s) 474, 875
HpyAV CCTTC 8 cut(s) 21, 63, 87, 310, 319, 486, 559, 1002
HpyCH4V TGCA 2 cut(s) 391, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 842
HpyF3I CTNAG 3 cut(s) 168, 254, 513
Hsp92II CATG 6 cut(s) 145, 242, 304, 841, 907, 959
HspAI GCGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 958
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 4 cut(s) 250, 508, 958, 1135
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 2 cut(s) 463, 1143
LweI GCATC 1 cut(s) 922
MaeI CTAG 3 cut(s) 309, 833, 1080
MaeIII GTNAC 1 cut(s) 749
MalI GATC 4 cut(s) 252, 510, 960, 1137
MboI GATC 4 cut(s) 250, 508, 958, 1135
MluCI AATT 3 cut(s) 361, 627, 1107
MlyI GAGTC 4 cut(s) 13, 103, 265, 647
MmeI TCCRAC 1 cut(s) 131
MseI TTAA 2 cut(s) 599, 783
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 3 cut(s) 268, 467, 912
MspR9I CCNGG 1 cut(s) 268
MvnI CGCG 2 cut(s) 119, 139
MwoI GCNNNNNNNGC 2 cut(s) 138, 842
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 837
NdeI CATATG 1 cut(s) 921
NdeII GATC 4 cut(s) 250, 508, 958, 1135
NlaIII CATG 6 cut(s) 145, 242, 304, 841, 907, 959
NlaIV GGNNCC 3 cut(s) 290, 465, 1065
NmuCI GTSAC 1 cut(s) 749
PceI AGGCCT 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 2 cut(s) 86, 104
PfeI GAWTC 1 cut(s) 1076
PfoI TCCNGGA 1 cut(s) 266
PinAI ACCGGT 1 cut(s) 911
PkrI GCNGC 3 cut(s) 75, 118, 121
PleI GAGTC 4 cut(s) 13, 103, 264, 646
PpsI GAGTC 4 cut(s) 13, 103, 264, 646
PsiI TTATAA 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 225
PspN4I GGNNCC 3 cut(s) 290, 465, 1065
PspPI GGNCC 2 cut(s) 288, 474
RsaI GTAC 5 cut(s) 248, 332, 458, 902, 1027
RsaNI GTAC 5 cut(s) 247, 331, 457, 901, 1026
SacII CCGCGG 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 2 cut(s) 599, 783
SatI GCNGC 3 cut(s) 74, 117, 120
Sau3AI GATC 4 cut(s) 250, 508, 958, 1135
Sau96I GGNCC 2 cut(s) 288, 474
ScaI AGTACT 1 cut(s) 1027
SchI GAGTC 4 cut(s) 13, 103, 265, 647
ScrFI CCNGG 1 cut(s) 268
SfaNI GCATC 1 cut(s) 922
Sfr303I CCGCGG 1 cut(s) 120
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 2 cut(s) 288, 474
Sse9I AATT 3 cut(s) 361, 627, 1107
SseBI AGGCCT 1 cut(s) 52
SsiI CCGC 7 cut(s) 74, 117, 119, 137, 236, 292, 346
SspMI CTAG 3 cut(s) 309, 833, 1080
StuI AGGCCT 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 837
TaqI TCGA 4 cut(s) 68, 80, 89, 641
TasI AATT 3 cut(s) 361, 627, 1107
TatI WGTACW 3 cut(s) 330, 900, 1025
TauI GCSGC 3 cut(s) 76, 119, 122
TfiI GAWTC 1 cut(s) 1076
Tru1I TTAA 2 cut(s) 599, 783
Tru9I TTAA 2 cut(s) 599, 783
TscAI CASTG 1 cut(s) 754
TseFI GTSAC 1 cut(s) 749
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 4 cut(s) 317, 723, 989, 1119
TspGWI ACGGA 1 cut(s) 1138
TspRI CASTG 1 cut(s) 754
VpaK11BI GGWCC 2 cut(s) 288, 474
XapI RAATTY 2 cut(s) 361, 1107
XspI CTAG 3 cut(s) 309, 833, 1080
ZrmI AGTACT 1 cut(s) 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.