FvH4_5g00881

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002151
Physical Location & Seq
Reverse (-)
509608 .. 511443
1836 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00881.t1

Sequence Viewer

Length: 1593 bp
ATGGTGAAGAGCACAGAGCGTGTCTGCCACTACAAGACCTTAGGCCTCGAACCTAACTGCTCAGGTGAACAAATTAAGGCTGCTTACAGGAAGCTAATCCTTATATACCATTGGGACAAATGCAGATCATCCCAATGCGGATTGTCCCAAGACGAAGCTACCGCCAAATTTTTACAAGTCCGAGAAGCATACGAAACCCTAATGGATCCCATAAGGCGAGAAGCCTTCGACGCCTACCGGCAGACCTACGCTGTTCCTGAAGTTTTCAACCCCGACCTCGAAATCCCCTTTGACAATGTCGACTTCAAGGGCTACTCCAGCTCCGGCAGTGGCTTCTATAAGGTCTATTCTGATCTTTTTCAAAGGATTTATGCCAATGAACGCGCTTATCAAAAGAAGAAGAAGATGCCCTGGAATTCGGTTAATAAGCCTCCGGAGATGGGCAATCTCGATAGCTCATACCCGGAGGTTGTTCAATTTTACAACTACTGGCTCAACTTTGGTTCGATAATGGATTTCTGCTGGGAGGATCCGCATGATGGGATTGATCTAAGTAAGGCCGGTCGAAAAGGATGTAAATTTTGGTCTCGTGTAAACATGAAGGCGAGGAAGAAAGCCAAGAAGGAGTACAACAATAAGGTGCGAGGTTTGGCACAAAATGCCAAAAGGCTTGACAAGAGGATCATGCAGATGATGAAAAAGAGAGAGGAGGAGAGAAAGAGGGAGATAGAGGAGGAGACGGAAAGAAGGAAGCAATTGAAGAAAGAGAAGTTGGACAAGGCTATGGAGTATGTGGAGCAGGAGTGGACAAAACCGGTCGAGAGAAAACCAAAATATAGTAATGAGTTGGAGAGGGAGGAGAAAAAAGAGAGACAGGAATGGGAGTGTGTGGTTTGTAGGAAGGCGTTTAGGAGTGAGAAGCAGTGCAGGAATCATGAGCAGTCGAGGAAGCATCTTCGTTTGTATGCAAAGTTGATGGAGTTGCTATCGTTGGAGGAGTGTAATTACGAAGAACATGATGAAGAAGAGGTTTTGAAGGAAGCAAAAAGGAATGAAGTGGTTGGAGGAAGTGATAGTGAAGATGCGAGTGTTAATGATAGCCAAAGGGAGAAGTTCAATGAAGAAGGTGAAGTTGATGATGAGGAAGTGGAAGTGGAAGATGATGAGATGGATGTTCTTGAAGCAATGATGGCAAGGAGAAAGACGATGGAAAAGGTTAGTGAAGATATACATGAATCAGTGGTTGAATCCTTGAATAATGCTGACGAGGTGGCTATGGAGCATGACATACTAAAGAACACCGATAAGAATGGAGAGAGAGAATCGAGGAGAAGAGCCAAGAGTACTAGAACTAACGAACGTGATGGTTCCAGTTCCAGTTCCAATATGAAGGAAGCGAAACCTGATAGCAGATCAAGAAAAGGGAAGGTGGAGGGTTTAGGGAAGAAGACAATGAGCAGAAGAAAATTAGCAATGGAGGAAGGAGGGAAGAGAAGCGGTGAAGAAAGAAGAAACTATCAACTTGATACATTCTTCTATTATTCTGTTGTGAATGAGACTTTTCTAAATACGTTGTGCGAGGAAAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

531

Amino Acids

62.64

Weight (kDa)

6.39

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 77 6.1e-16 DnaJ domain
ZUO1-like_ZHD PF21884 134 - 228 9.9e-17 Zuotin-like, zuotin homology domain
zf-met PF12874 294 - 318 6.5e-06 Zinc-finger of C2H2 type
zf-C2H2_jaz PF12171 294 - 318 9.1e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 384
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 4 cut(s) 138, 162, 533, 1497
AclWI GGATC 5 cut(s) 200, 213, 524, 537, 689
AcsI RAATTY 3 cut(s) 167, 415, 578
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 2 cut(s) 629, 1345
AfiI CCNNNNNNNGG 2 cut(s) 440, 539
AgeI ACCGGT 1 cut(s) 814
AjnI CCWGG 1 cut(s) 410
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 4 cut(s) 94, 158, 321, 456
AluI AGCT 4 cut(s) 94, 158, 321, 456
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 4 cut(s) 591, 731, 865, 1550
AlwI GGATC 5 cut(s) 200, 213, 524, 537, 689
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 2 cut(s) 43, 558
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 3 cut(s) 167, 415, 578
AsiGI ACCGGT 1 cut(s) 814
AspLEI GCGC 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 464
AsuHPI GGTGA 4 cut(s) 16, 77, 1139, 1511
AxyI CCTNAGG 1 cut(s) 40
BamHI GGATCC 2 cut(s) 205, 529
BauI CACGAG 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 1454
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 67
BccI CCATC 7 cut(s) 433, 533, 970, 1162, 1183, 1201, 1358
BciT130I CCWGG 1 cut(s) 412
BcnI CCSGG 1 cut(s) 464
BcoDI GTCTC 4 cut(s) 591, 731, 865, 1550
BfaI CTAG 1 cut(s) 1347
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 1345
Bme1390I CCNGG 2 cut(s) 412, 464
BmiI GGNNCC 3 cut(s) 207, 531, 1369
BmrFI CCNGG 2 cut(s) 412, 464
BmsI GCATC 3 cut(s) 396, 961, 1072
BpiI GAAGAC 1 cut(s) 1454
BpmI CTGGAG 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 464
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 1 cut(s) 410
BsaWI WCCGGW 2 cut(s) 433, 814
BsaXI ACNNNNNCTCC 4 cut(s) 305, 335, 788, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 539
Bse118I RCCGGY 3 cut(s) 237, 560, 814
Bse1I ACTGG 3 cut(s) 494, 1371, 1377
Bse21I CCTNAGG 1 cut(s) 40
Bse3DI GCAATG 2 cut(s) 1191, 1479
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 1 cut(s) 412
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 3 cut(s) 128, 578, 1177
BseLI CCNNNNNNNGG 2 cut(s) 440, 539
BseMI GCAATG 2 cut(s) 1191, 1479
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 3 cut(s) 494, 1371, 1377
BseRI GAGGAG 7 cut(s) 722, 725, 746, 749, 872, 1010, 1342
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 1 cut(s) 946
Bsh1236I CGCG 1 cut(s) 384
Bsh1285I CGRYCG 2 cut(s) 565, 819
BshFI GGCC 2 cut(s) 45, 560
BshTI ACCGGT 1 cut(s) 814
BsiEI CGRYCG 2 cut(s) 565, 819
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 6 cut(s) 238, 324, 434, 464, 561, 815
BslFI GGGAC 2 cut(s) 128, 130
BslI CCNNNNNNNGG 2 cut(s) 440, 539
BsmAI GTCTC 4 cut(s) 591, 731, 865, 1550
BsmBI CGTCTC 1 cut(s) 731
BsmFI GGGAC 2 cut(s) 128, 130
BsnI GGCC 2 cut(s) 45, 560
Bso31I GGTCTC 1 cut(s) 591
Bsp1286I GDGCHC 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 7 cut(s) 125, 205, 352, 529, 547, 681, 1412
BspACI CCGC 4 cut(s) 138, 162, 533, 1497
BspANI GGCC 2 cut(s) 45, 560
BspCNI CTCAG 1 cut(s) 74
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 1 cut(s) 384
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 3 cut(s) 207, 531, 1369
BspPI GGATC 5 cut(s) 200, 213, 524, 537, 689
BspQI GCTCTTC 2 cut(s) 2, 1327
BspTNI GGTCTC 1 cut(s) 591
BsrDI GCAATG 2 cut(s) 1191, 1479
BsrFI RCCGGY 3 cut(s) 237, 560, 814
BsrI ACTGG 3 cut(s) 494, 1371, 1377
BssAI RCCGGY 3 cut(s) 237, 560, 814
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 7 cut(s) 125, 205, 352, 529, 547, 681, 1412
BssNI GRCGYC 1 cut(s) 231
BssSI CACGAG 1 cut(s) 588
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 1 cut(s) 412
Bst6I CTCTTC 4 cut(s) 2, 1020, 1327, 1484
BstACI GRCGYC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 659
BstDEI CTNAG 3 cut(s) 40, 61, 551
BstF5I GGATG 3 cut(s) 128, 578, 1177
BstFNI CGCG 1 cut(s) 384
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 7 cut(s) 128, 208, 355, 532, 550, 684, 1415
BstMAI GTCTC 4 cut(s) 591, 731, 865, 1550
BstMBI GATC 7 cut(s) 125, 205, 352, 529, 547, 681, 1412
BstMCI CGRYCG 2 cut(s) 565, 819
BstMWI GCNNNNNNNGC 4 cut(s) 230, 318, 659, 1190
BstNI CCWGG 1 cut(s) 412
BstSCI CCNGG 2 cut(s) 410, 462
BstUI CGCG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 67
BstV2I GAAGAC 1 cut(s) 1454
BstX2I RGATCY 2 cut(s) 205, 529
BstYI RGATCY 2 cut(s) 205, 529
Bsu36I CCTNAGG 1 cut(s) 40
BsuRI GGCC 2 cut(s) 45, 560
BtsCI GGATG 3 cut(s) 128, 578, 1177
BtsI GCAGTG 2 cut(s) 334, 929
BtsIMutI CAGTG 3 cut(s) 334, 929, 1245
CciI TCATGA 1 cut(s) 934
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 3 cut(s) 237, 560, 814
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 628, 1344
CspAI ACCGGT 1 cut(s) 814
CviAII CATG 7 cut(s) 536, 598, 685, 935, 1016, 1232, 1283
CviQI GTAC 2 cut(s) 628, 1344
DdeI CTNAG 3 cut(s) 40, 61, 551
DpnI GATC 7 cut(s) 127, 207, 354, 531, 549, 683, 1414
DpnII GATC 7 cut(s) 125, 205, 352, 529, 547, 681, 1412
Eam1104I CTCTTC 4 cut(s) 2, 1020, 1327, 1484
EarI CTCTTC 4 cut(s) 2, 1020, 1327, 1484
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 410
Esp3I CGTCTC 1 cut(s) 731
FaeI CATG 7 cut(s) 539, 601, 688, 938, 1019, 1235, 1286
FaqI GGGAC 2 cut(s) 128, 130
FatI CATG 7 cut(s) 535, 597, 684, 934, 1015, 1231, 1282
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 115, 585, 1184
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 1347
GlaI GCGC 1 cut(s) 385
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 2 cut(s) 45, 560
HapII CCGG 6 cut(s) 238, 324, 434, 464, 561, 815
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 7 cut(s) 539, 601, 688, 938, 1019, 1235, 1286
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 4 cut(s) 931, 1235, 1247, 1322
HpaII CCGG 6 cut(s) 238, 324, 434, 464, 561, 815
HphI GGTGA 4 cut(s) 16, 77, 1139, 1511
Hpy166II GTNNAC 4 cut(s) 68, 301, 595, 807
Hpy188I TCNGA 2 cut(s) 182, 352
Hpy188III TCNNGA 7 cut(s) 257, 434, 449, 820, 935, 1178, 1416
Hpy8I GTNNAC 4 cut(s) 68, 301, 595, 807
Hpy99I CGWCG 1 cut(s) 233
HpyCH4IV ACGT 2 cut(s) 1360, 1571
HpyCH4V TGCA 4 cut(s) 123, 688, 927, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 230, 318, 659, 1190
HpyF3I CTNAG 3 cut(s) 40, 61, 551
HpySE526I ACGT 2 cut(s) 1360, 1571
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 7 cut(s) 539, 601, 688, 938, 1019, 1235, 1286
HspAI GCGC 1 cut(s) 384
Kpn2I TCCGGA 1 cut(s) 433
Kzo9I GATC 7 cut(s) 125, 205, 352, 529, 547, 681, 1412
LguI GCTCTTC 2 cut(s) 2, 1327
LmnI GCTCC 3 cut(s) 326, 796, 1279
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 3 cut(s) 396, 961, 1072
MaeI CTAG 1 cut(s) 1347
MaeII ACGT 2 cut(s) 1360, 1571
MalI GATC 7 cut(s) 127, 207, 354, 531, 549, 683, 1414
MboI GATC 7 cut(s) 125, 205, 352, 529, 547, 681, 1412
MfeI CAATTG 1 cut(s) 755
MflI RGATCY 2 cut(s) 205, 529
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 8 cut(s) 72, 167, 415, 476, 578, 755, 1003, 1466
MmeI TCCRAC 4 cut(s) 753, 828, 972, 1042
MroI TCCGGA 1 cut(s) 433
MseI TTAA 3 cut(s) 75, 423, 1092
MslI CAYNNNNRTG 2 cut(s) 133, 689
MspI CCGG 6 cut(s) 238, 324, 434, 464, 561, 815
MspR9I CCNGG 2 cut(s) 412, 464
MunI CAATTG 1 cut(s) 755
MvaI CCWGG 1 cut(s) 412
MvnI CGCG 1 cut(s) 384
MwoI GCNNNNNNNGC 4 cut(s) 230, 318, 659, 1190
NciI CCSGG 1 cut(s) 464
NdeII GATC 7 cut(s) 125, 205, 352, 529, 547, 681, 1412
NlaIII CATG 7 cut(s) 539, 601, 688, 938, 1019, 1235, 1286
NlaIV GGNNCC 3 cut(s) 207, 531, 1369
PagI TCATGA 1 cut(s) 934
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 2, 1327
PfeI GAWTC 4 cut(s) 931, 1235, 1247, 1322
PflFI GACNNNGTC 1 cut(s) 296
PinAI ACCGGT 1 cut(s) 814
PkrI GCNGC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 410
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 3 cut(s) 207, 531, 1369
PsuI RGATCY 2 cut(s) 205, 529
PsyI GACNNNGTC 1 cut(s) 296
RsaI GTAC 2 cut(s) 629, 1345
RsaNI GTAC 2 cut(s) 628, 1344
RseI CAYNNNNRTG 2 cut(s) 133, 689
SalI GTCGAC 1 cut(s) 299
SapI GCTCTTC 2 cut(s) 2, 1327
SaqAI TTAA 3 cut(s) 75, 423, 1092
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 7 cut(s) 125, 205, 352, 529, 547, 681, 1412
ScaI AGTACT 1 cut(s) 1345
ScrFI CCNGG 2 cut(s) 412, 464
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 3 cut(s) 396, 961, 1072
SmiMI CAYNNNNRTG 2 cut(s) 133, 689
Sse9I AATT 8 cut(s) 72, 167, 415, 476, 578, 755, 1003, 1466
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 4 cut(s) 138, 162, 533, 1497
SspMI CTAG 1 cut(s) 1347
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 410, 462
TaiI ACGT 2 cut(s) 1363, 1574
TasI AATT 8 cut(s) 72, 167, 415, 476, 578, 755, 1003, 1466
TatI WGTACW 2 cut(s) 627, 1343
TfiI GAWTC 4 cut(s) 931, 1235, 1247, 1322
Tru1I TTAA 3 cut(s) 75, 423, 1092
Tru9I TTAA 3 cut(s) 75, 423, 1092
TscAI CASTG 3 cut(s) 334, 929, 1245
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 8 cut(s) 393, 614, 710, 1035, 1068, 1134, 1248, 1403
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 3 cut(s) 334, 929, 1245
Tth111I GACNNNGTC 1 cut(s) 296
XapI RAATTY 3 cut(s) 167, 415, 578
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 1347
ZrmI AGTACT 1 cut(s) 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.