RLG00000003720

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0002151
Physical Location & Seq
Reverse (-)
52040604 .. 52042079
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003720

Sequence Viewer

Length: 1476 bp
ATGGTGAAGAGCACCGAGCGCGTCTGCTACTACAAGACCTTAGGCCTCGAACCCAACTGCTCAATGGATGATGTCAGACATGCTTACCATGAACTTTCCATAATATACCACCCGGACAAATACAAGTCCAGTTGCGGCATGACGGAAGACGAAGCCGCCGCCAAATTCCTAGAGATCAAAGACGCCTACAACATTCTCAAAGAACCCGATGAGCGAGCCTTCTACGACTCCTACCGCCAGACCTACGCTGTCCCAGAGGCTTTCAACCCCGACCTCGAAGCCGCCTTCGACAACATCAACTTCAATGGCTACTCTGATTCCAACCGCGGTTTCTACAAGGTCTATTCTGACGTTTTCAACAGGATTTACGCCAGCGAGCGTGCTTTTCAGGAAAGGAATGACCTACCGTGGGATTCGGTTCACAAGCCTCCGGACATGGGGAATCTCGAGAGCCCGTATCCCGAGGTTGTTAAGTTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGACCCGTATGATGAGTATGATCTCAGTAGGGTCATCCGCAGGGGGTATAAGCTGTGGTCGAAAAAGAATATGAAAGCGAGGAAGAAGGCTAAGAAGGAGTACAACAACAAGGTGCGGGATTTGGCACATAATGCGAAGAGGCTGGACAAGAGGGTCATGCAGATGATGGAGAAGAGGGAGGAGGAAAGGAAGAGGGAGATGGAGAAGGAAAGGGAGAGGAGGAAGCGGTTGAAGAAGGAGAAGCTGGCGAAGGCCGCTATAGAGTATGAGGAGCAGGAGTGGACCAAAGTGGTTGAGAGGAAGAGAAAATATGGTGATCCTGAGGATGAGAAGGAAAAGGAGAGAGAGGAATGGGAGTGCGTGGTTTGCAGAAAGGGGTTTAGGAGTGAAAAGCAGTGTCGGAATCACGAGCAGTCGAAGAAGCACCTCCGCATGGTTATGGAGTTGATGAAGTTGGAACATTATGATATGGTTGCGGAGTTGATTGAGGTAGAGAGAAATTATGAAGAGCTTAATGAAGATGAGGTTTTAATGGAAGAAAAAAGGAATGAGGTGGTGGATGATGGGGTTGGAGGGAGAACTGATAGTAACGAAAATGAATTTTCTGATTGTGATAATGAGAATCAGAAGGAAAAAGTCAGTGAAATAGTTGAAGTCGATGAGGTGGAGGTGGAGGAGGAGGAGGATGAGGATGAGATGAATGTTCTTGAAGCAATGGTGGCGAGGCGAAAGGCTATGGAAAAGGTTTGTGACGATGTTCTTGAACCAATGTTTGAGGTCATGGCGACCAATATGCATGTGGAGAATGATGTTAATGAGGTGGCTATAGAGCAACATGATAAGCTAAAGAGCACGAATTATAAAATTGGAGGGAAGAAACCGAGGAGGAGGAGGAGGAGTGTGGAGTGTACTAGAATTAACGAACACGATATTCTCCAAATTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

492

Amino Acids

58.96

Weight (kDa)

5.21

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 76 2.4e-16 DnaJ domain
ZUO1-like_ZHD PF21884 111 - 227 1.4e-16 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 293 - 317 6.2e-07 Zinc-finger double-stranded RNA-binding
zf-met PF12874 293 - 317 1.7e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1386
AasI GACNNNNNNGTC 1 cut(s) 677
AccII CGCG 2 cut(s) 21, 327
AccIII TCCGGA 1 cut(s) 430
AclWI GGATC 1 cut(s) 836
AcsI RAATTY 3 cut(s) 164, 1124, 1464
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 626, 1435
AfiI CCNNNNNNNGG 3 cut(s) 409, 437, 958
AgsI TTSAA 8 cut(s) 265, 304, 358, 757, 1178, 1235, 1289, 1469
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 4 cut(s) 577, 769, 1036, 1369
AluI AGCT 4 cut(s) 577, 769, 1036, 1369
Alw21I GWGCWC 2 cut(s) 14, 1379
AlwI GGATC 1 cut(s) 836
Ama87I CYCGRG 2 cut(s) 446, 461
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 2 cut(s) 43, 777
ApoI RAATTY 3 cut(s) 164, 1124, 1464
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 2 cut(s) 526, 807
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 16, 851
AvaI CYCGRG 2 cut(s) 446, 461
AvaII GGWCC 2 cut(s) 526, 807
AxyI CCTNAGG 2 cut(s) 40, 846
BanII GRGCYC 1 cut(s) 455
BauI CACGAG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 14, 1379
BccI CCATC 3 cut(s) 685, 718, 1082
BcgI CGANNNNNNTGC 2 cut(s) 1300, 1334
BciVI GTATCC 1 cut(s) 468
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 2 cut(s) 170, 1437
BfmI CTRYAG 2 cut(s) 783, 1350
BfuI GTATCC 1 cut(s) 468
BisI GCNGC 5 cut(s) 136, 156, 159, 282, 780
BlsI GCNGC 5 cut(s) 137, 157, 160, 283, 781
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 2 cut(s) 526, 807
BmeT110I CYCGRG 2 cut(s) 446, 461
BmgT120I GGNCC 2 cut(s) 526, 807
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 4 cut(s) 325, 407, 462, 1406
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 6 cut(s) 515, 545, 788, 818, 1408, 1438
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 437, 958
Bse1I ACTGG 2 cut(s) 129, 491
Bse21I CCTNAGG 2 cut(s) 40, 846
Bse3DI GCAATG 1 cut(s) 1245
BseAI TCCGGA 1 cut(s) 430
BseDI CCNNGG 4 cut(s) 325, 407, 462, 1406
BseGI GGATG 6 cut(s) 73, 558, 856, 1090, 1216, 1222
BseLI CCNNNNNNNGG 3 cut(s) 409, 437, 958
BseMI GCAATG 1 cut(s) 1245
BseMII CTCAG 2 cut(s) 562, 837
BseNI ACTGG 2 cut(s) 129, 491
BseYI CCCAGC 1 cut(s) 519
Bsh1236I CGCG 2 cut(s) 21, 327
BshFI GGCC 2 cut(s) 45, 779
BsiHKAI GWGCWC 2 cut(s) 14, 1379
BsiHKCI CYCGRG 2 cut(s) 446, 461
BsiSI CCGG 2 cut(s) 113, 431
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 409, 437, 958
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 45, 779
BsoBI CYCGRG 2 cut(s) 446, 461
Bsp1286I GDGCHC 3 cut(s) 14, 455, 1379
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 174, 544, 841
BspANI GGCC 2 cut(s) 45, 779
BspCNI CTCAG 2 cut(s) 561, 838
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 2 cut(s) 21, 327
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 1 cut(s) 836
BspQI GCTCTTC 2 cut(s) 2, 1026
BsrDI GCAATG 1 cut(s) 1245
BsrI ACTGG 2 cut(s) 129, 491
BssECI CCNNGG 4 cut(s) 325, 407, 462, 1406
BssMI GATC 3 cut(s) 174, 544, 841
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 932
Bst2BI CACGAG 1 cut(s) 932
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 6 cut(s) 2, 656, 692, 710, 821, 1026
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 5 cut(s) 216, 373, 377, 381, 771
BstDEI CTNAG 4 cut(s) 40, 548, 615, 846
BstDSI CCRYGG 2 cut(s) 325, 407
BstF5I GGATG 6 cut(s) 73, 558, 856, 1090, 1216, 1222
BstFNI CGCG 2 cut(s) 21, 327
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 3 cut(s) 177, 547, 844
BstMBI GATC 3 cut(s) 174, 544, 841
BstMWI GCNNNNNNNGC 5 cut(s) 18, 656, 779, 891, 1244
BstNSI RCATGY 2 cut(s) 83, 1325
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 2 cut(s) 783, 1350
BstUI CGCG 2 cut(s) 21, 327
BstV2I GAAGAC 1 cut(s) 153
Bsu36I CCTNAGG 2 cut(s) 40, 846
BsuI GTATCC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 45, 779
BtgI CCRYGG 2 cut(s) 325, 407
BtsCI GGATG 6 cut(s) 73, 558, 856, 1090, 1216, 1222
BtsI GCAGTG 1 cut(s) 926
BtsIMutI CAGTG 2 cut(s) 926, 1171
Cac8I GCNNGC 5 cut(s) 216, 373, 377, 381, 771
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 2 cut(s) 526, 807
Cfr42I CCGCGG 1 cut(s) 328
CseI GACGC 2 cut(s) 10, 191
Csp6I GTAC 2 cut(s) 625, 1434
CviAII CATG 9 cut(s) 80, 89, 139, 436, 682, 958, 1306, 1322, 1361
CviQI GTAC 2 cut(s) 625, 1434
DdeI CTNAG 4 cut(s) 40, 548, 615, 846
DpnI GATC 3 cut(s) 176, 546, 843
DpnII GATC 3 cut(s) 174, 544, 841
DrdI GACNNNNNNGTC 1 cut(s) 677
DseDI GACNNNNNNGTC 1 cut(s) 677
Eam1104I CTCTTC 6 cut(s) 2, 656, 692, 710, 821, 1026
EarI CTCTTC 6 cut(s) 2, 656, 692, 710, 821, 1026
Eco147I AGGCCT 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 455
Eco47I GGWCC 2 cut(s) 526, 807
Eco81I CCTNAGG 2 cut(s) 40, 846
Eco88I CYCGRG 2 cut(s) 446, 461
EcoO109I RGGNCCY 1 cut(s) 526
EcoT22I ATGCAT 1 cut(s) 1323
EcoT38I GRGCYC 1 cut(s) 455
FaeI CATG 9 cut(s) 83, 92, 142, 439, 685, 961, 1309, 1325, 1364
FaqI GGGAC 1 cut(s) 236
FatI CATG 9 cut(s) 79, 88, 138, 435, 681, 957, 1305, 1321, 1360
FauI CCCGC 1 cut(s) 633
Fnu4HI GCNGC 5 cut(s) 136, 156, 159, 282, 780
FokI GGATG 6 cut(s) 80, 545, 863, 1097, 1223, 1229
FriOI GRGCYC 1 cut(s) 455
Fsp4HI GCNGC 5 cut(s) 136, 156, 159, 282, 780
FspBI CTAG 2 cut(s) 170, 1437
GlaI GCGC 1 cut(s) 20
GluI GCNGC 5 cut(s) 136, 156, 159, 282, 780
GsaI CCCAGC 1 cut(s) 523
HaeIII GGCC 2 cut(s) 45, 779
HapII CCGG 2 cut(s) 113, 431
HgaI GACGC 2 cut(s) 10, 191
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 9 cut(s) 83, 92, 142, 439, 685, 961, 1309, 1325, 1364
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 6 cut(s) 227, 317, 413, 442, 928, 1147
HpaII CCGG 2 cut(s) 113, 431
HphI GGTGA 2 cut(s) 16, 851
Hpy166II GTNNAC 3 cut(s) 421, 807, 1434
Hpy188I TCNGA 6 cut(s) 77, 316, 349, 927, 1132, 1152
Hpy188III TCNNGA 9 cut(s) 389, 431, 446, 448, 461, 845, 932, 1232, 1286
Hpy8I GTNNAC 3 cut(s) 421, 807, 1434
HpyAV CCTTC 9 cut(s) 229, 295, 604, 613, 724, 754, 769, 850, 1147
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 3 cut(s) 685, 894, 1321
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 656, 779, 891, 1244
HpyF3I CTNAG 4 cut(s) 40, 548, 615, 846
HpySE526I ACGT 1 cut(s) 351
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 9 cut(s) 83, 92, 142, 439, 685, 961, 1309, 1325, 1364
HspAI GCGC 1 cut(s) 19
Kpn2I TCCGGA 1 cut(s) 430
KspI CCGCGG 1 cut(s) 328
Kzo9I GATC 3 cut(s) 174, 544, 841
LguI GCTCTTC 2 cut(s) 2, 1026
LmnI GCTCC 1 cut(s) 796
MaeI CTAG 2 cut(s) 170, 1437
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 1112, 1274
MalI GATC 3 cut(s) 176, 546, 843
MboI GATC 3 cut(s) 174, 544, 841
MhlI GDGCHC 3 cut(s) 14, 455, 1379
MluCI AATT 7 cut(s) 164, 1024, 1124, 1381, 1389, 1440, 1464
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 4 cut(s) 345, 905, 960, 1075
Mph1103I ATGCAT 1 cut(s) 1323
MroI TCCGGA 1 cut(s) 430
MseI TTAA 5 cut(s) 471, 1038, 1055, 1338, 1443
MslI CAYNNNNRTG 2 cut(s) 686, 962
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 2 cut(s) 113, 431
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 21, 327
MwoI GCNNNNNNNGC 5 cut(s) 18, 656, 779, 891, 1244
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 174, 544, 841
NlaIII CATG 9 cut(s) 83, 92, 142, 439, 685, 961, 1309, 1325, 1364
NlaIV GGNNCC 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 1274
NsiI ATGCAT 1 cut(s) 1323
NspI RCATGY 2 cut(s) 83, 1325
PaeR7I CTCGAG 1 cut(s) 446
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 2 cut(s) 2, 1026
PfeI GAWTC 5 cut(s) 317, 413, 442, 928, 1147
PkrI GCNGC 5 cut(s) 137, 157, 160, 283, 781
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 526
PsiI TTATAA 1 cut(s) 1386
Psp5II RGGWCCY 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 2 cut(s) 526, 807
PspPPI RGGWCCY 1 cut(s) 526
RsaI GTAC 2 cut(s) 626, 1435
RsaNI GTAC 2 cut(s) 625, 1434
RseI CAYNNNNRTG 2 cut(s) 686, 962
SacII CCGCGG 1 cut(s) 328
SapI GCTCTTC 2 cut(s) 2, 1026
SaqAI TTAA 5 cut(s) 471, 1038, 1055, 1338, 1443
SatI GCNGC 5 cut(s) 136, 156, 159, 282, 780
Sau3AI GATC 3 cut(s) 174, 544, 841
Sau96I GGNCC 2 cut(s) 526, 807
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 3 cut(s) 14, 455, 1379
SfcI CTRYAG 2 cut(s) 783, 1350
Sfr274I CTCGAG 1 cut(s) 446
Sfr303I CCGCGG 1 cut(s) 328
SgrBI CCGCGG 1 cut(s) 328
SinI GGWCC 2 cut(s) 526, 807
SlaI CTCGAG 1 cut(s) 446
SmiMI CAYNNNNRTG 2 cut(s) 686, 962
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 7 cut(s) 164, 1024, 1124, 1381, 1389, 1440, 1464
SseBI AGGCCT 1 cut(s) 45
SspMI CTAG 2 cut(s) 170, 1437
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 354
TaqI TCGA 7 cut(s) 48, 276, 288, 447, 584, 941, 1182
TasI AATT 7 cut(s) 164, 1024, 1124, 1381, 1389, 1440, 1464
TatI WGTACW 2 cut(s) 624, 1433
TauI GCSGC 5 cut(s) 138, 158, 161, 284, 782
TfiI GAWTC 5 cut(s) 317, 413, 442, 928, 1147
Tru1I TTAA 5 cut(s) 471, 1038, 1055, 1338, 1443
Tru9I TTAA 5 cut(s) 471, 1038, 1055, 1338, 1443
TscAI CASTG 2 cut(s) 926, 1171
TseFI GTSAC 1 cut(s) 1274
Tsp45I GTSAC 1 cut(s) 1274
TspDTI ATGAA 7 cut(s) 105, 611, 989, 1044, 1056, 1137, 1238
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 2 cut(s) 926, 1171
VpaK11BI GGWCC 2 cut(s) 526, 807
XapI RAATTY 3 cut(s) 164, 1124, 1464
XceI RCATGY 2 cut(s) 83, 1325
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 1321
XhoI CTCGAG 1 cut(s) 446
XspI CTAG 2 cut(s) 170, 1437
Zsp2I ATGCAT 1 cut(s) 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.