RchiOBHm_Chr7g0200501

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002151
Physical Location & Seq
Forward (+)
18283701 .. 18284158
458 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17947

Sequence Viewer

Length: 354 bp
ATGGTGAAGAGCACCGAGCGCGTCTGCTACTACGAGACCTTAGGCCTCGAACCCAACTGCTCAATGGATGATGTCAGACATGCCTACCATGAACTTTCCATAATATACCACCCGGACAAATACAAGTCCAGTTGCGGCATGACAGAAGACGAAGCCGCCGCCAAATTCCTAGAGATCAAAGACGCCTACAACATTCTCAAAGAACCCGATGAGCGGGCCTTCTACGACTCCTACCGCCAGACCTACGCTGTCCCAGAGGCTTTCAACCCCGACCTCAAAGCCGCTTTCGACGTACAACATCAACTTCAATGGCTACTCCGATTCCAACCGCGGTTTCTACAAGGTCTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

117

Amino Acids

13.81

Weight (kDa)

5.12

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 76 1e-17 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 214
AccII CGCG 2 cut(s) 21, 331
AciI CCGC 8 cut(s) 135, 156, 159, 214, 235, 282, 329, 331
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 2 cut(s) 265, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 29
AoxI GGCC 2 cut(s) 43, 216
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 40
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 14
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 170
BisI GCNGC 4 cut(s) 136, 156, 159, 282
BlsI GCNGC 4 cut(s) 137, 157, 160, 283
Bme1390I CCNGG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 129
Bse21I CCTNAGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 129
Bsh1236I CGCG 2 cut(s) 21, 331
BshFI GGCC 2 cut(s) 45, 218
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 45, 218
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 8 cut(s) 135, 156, 159, 214, 235, 282, 329, 331
BspANI GGCC 2 cut(s) 45, 218
BspFNI CGCG 2 cut(s) 21, 331
BspQI GCTCTTC 1 cut(s) 2
BspTNI GGTCTC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 2
BstACI GRCGYC 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 40
BstDSI CCRYGG 1 cut(s) 329
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 2 cut(s) 21, 331
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 2 cut(s) 21, 331
BstV2I GAAGAC 1 cut(s) 153
Bsu36I CCTNAGG 1 cut(s) 40
BsuRI GGCC 2 cut(s) 45, 218
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 216
Cfr42I CCGCGG 1 cut(s) 332
CseI GACGC 2 cut(s) 10, 191
Csp6I GTAC 1 cut(s) 293
CviAII CATG 3 cut(s) 80, 89, 139
CviJI RGCY 6 cut(s) 45, 155, 218, 260, 281, 313
CviKI_1 RGCY 6 cut(s) 45, 155, 218, 260, 281, 313
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 1 cut(s) 40
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 29
Eco81I CCTNAGG 1 cut(s) 40
FaeI CATG 3 cut(s) 83, 92, 142
FaiI YATR 5 cut(s) 81, 90, 101, 106, 140
FaqI GGGAC 1 cut(s) 236
FatI CATG 3 cut(s) 79, 88, 138
FauI CCCGC 1 cut(s) 207
Fnu4HI GCNGC 4 cut(s) 136, 156, 159, 282
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 4 cut(s) 136, 156, 159, 282
FspBI CTAG 1 cut(s) 170
GlaI GCGC 1 cut(s) 20
GluI GCNGC 4 cut(s) 136, 156, 159, 282
HaeIII GGCC 2 cut(s) 45, 218
HapII CCGG 1 cut(s) 113
HgaI GACGC 2 cut(s) 10, 191
HhaI GCGC 1 cut(s) 21
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 3 cut(s) 83, 92, 142
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 2 cut(s) 227, 321
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 3 cut(s) 77, 320, 353
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 3 cut(s) 83, 92, 142
HspAI GCGC 1 cut(s) 19
KspI CCGCGG 1 cut(s) 332
Kzo9I GATC 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 4 cut(s) 126, 142, 251, 267
MaeI CTAG 1 cut(s) 170
MaeII ACGT 1 cut(s) 291
MalI GATC 1 cut(s) 176
MbiI CCGCTC 1 cut(s) 214
MboI GATC 1 cut(s) 174
MboII GAAGA 2 cut(s) 19, 158
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 349
MnlI CCTC 3 cut(s) 56, 250, 284
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 21, 331
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 113
NdeII GATC 1 cut(s) 174
NlaIII CATG 3 cut(s) 83, 92, 142
NspI RCATGY 1 cut(s) 83
PceI AGGCCT 1 cut(s) 45
PciSI GCTCTTC 1 cut(s) 2
PfeI GAWTC 1 cut(s) 321
PkrI GCNGC 4 cut(s) 137, 157, 160, 283
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SacII CCGCGG 1 cut(s) 332
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 4 cut(s) 136, 156, 159, 282
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 14
SetI ASST 5 cut(s) 41, 245, 276, 294, 346
Sfr303I CCGCGG 1 cut(s) 332
SgrBI CCGCGG 1 cut(s) 332
Sse9I AATT 1 cut(s) 164
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 8 cut(s) 135, 156, 159, 214, 235, 282, 329, 331
SspMI CTAG 1 cut(s) 170
StuI AGGCCT 1 cut(s) 45
StyD4I CCNGG 1 cut(s) 111
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 48, 288
TasI AATT 1 cut(s) 164
TauI GCSGC 4 cut(s) 138, 158, 161, 284
TfiI GAWTC 1 cut(s) 321
TspDTI ATGAA 1 cut(s) 105
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.