Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00094

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Reverse (-)

29107 .. 30961

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGTGAAGAGCACAGAGCGCGTCTGCCACTACGAGACCTTAGAAGAAGCCACTGCCAAATTTTTAGAGGTCCAACAAGCCTACGAAATCCTTATGGATCCCATAAAGCGAGAAACCTATAACGCCTACCGCCAGACATACGCTGTCCCTGAAGTTTTCAACCCCGACCTCGAAGTACCCTTTGACAACATCGTCTTCAACGGCTACTCCAGCTCCAGCCGCAGCTTCTACAATGCCTACTCTGACATTTTTCAAAGGATTTACGCCAACGAGCGCGCTTTTCAAAAGAAGAACGACCTGCCGTGGAATTCGGTTCACAAGCCTCCAGACATGGGCAATCTCGACACCCCTTATCCTGAGGTTGTTCAATTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCACATGATGAGTATGATCTAAGTCAGGTGTCCCAGAGAGGGGCGAGGAAGAAAGCAAAGAAGGAATACAACAATAAGGTGAGGAGTTTGGCACAAACTGCGAAAAGGCTCGACAGGAGGGTCATGCAGATGGTAGCGAAGAGGGAGGTGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGGAGGAAGCGGTTGAAGAAAGAGAAGTTGGTGAAGGCTATAGAGTATGAGGAGCAGGAGTGGACGAAACCAGTTGAGAGGAAGAGAAAATATAGTAACAAGGAGGAGGAGGAGGAGGAAAAAGAGAGAGACGAATGGGAGTGTGTAGTTTGCAGGAAGGTGTACAGGAGTGAGCGGCAGTGCAGGAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAAAGTTAATGGAGTTGTTGGAGGTTTTGGAGGAAAAACCAGATGAAGAAGAGGTTTTGGAGGAAGCAAAAAGGAATGAGGTGGTTGGAGGGAGTGATGGCGAAGAGGAGTTTGTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTGGAGGAGGATGAGGTGGGTGTTCTTGAAGCAATGGTGGCGAGGCGAAAGACAATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCATGGCGAGTAGTAGTCAAGAGGTGAAGAATGCTGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACGCCAATAAGAATGAAGGAGAAAGGAAACCGAGGAGGAGAAGAGCCAAGAGTACTAGAACTGACGAACGTGATGGTTCAAATAATATGAAGGAATCCAAACCTGATTGTAGTGCAGAAAAAGGATATGATGAGGATCAGATCAATAAAAGGAAGGGTGGAGAGAGGAAAGAGAGGAGCGGTAAGAAGAGTAACGGTAAAGGAGATATTGAGCAGAAGAAAATGAGGAGCGGAGGAAGGAGTGAAGAGAAGAAGGGTAAGAAGAGAAATGTGGTCGGCTTCTTTTATTTTATTAGTACAGGCCACATTTGCTTTCTGTTCGTGTCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

502

Amino Acids

59.21

Weight (kDa)

5.6

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ZUO1-like_ZHD	PF21884	83 - 182	8.3e-12	Zuotin-like, zuotin homology domain
zf-C2H2_jaz	PF12171	248 - 272	8.1e-06	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	191, 542
Acc36I	ACCTGC	1 cut(s)	306
AccBSI	CCGCTC	3 cut(s)	781, 1356, 1407
AccII	CGCG	2 cut(s)	21, 276
AciI	CCGC	7 cut(s)	130, 220, 616, 781, 820, 1356, 1407
AclWI	GGATC	5 cut(s)	92, 105, 416, 429, 1320
AcsI	RAATTY	2 cut(s)	59, 307
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	4 cut(s)	177, 770, 1231, 1474
AfiI	CCNNNNNNNGG	3 cut(s)	332, 462, 463
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	4 cut(s)	213, 225, 976, 1171
AluI	AGCT	4 cut(s)	213, 225, 976, 1171
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	2 cut(s)	29, 729
AlwI	GGATC	5 cut(s)	92, 105, 416, 429, 1320
AoxI	GGCC	1 cut(s)	1477
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	2 cut(s)	59, 307
Asp700I	GAANNNNTTC	1 cut(s)	1083
AspLEI	GCGC	3 cut(s)	21, 276, 278
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	6 cut(s)	16, 514, 649, 1001, 1088, 1144
AvaII	GGWCC	1 cut(s)	70
AxyI	CCTNAGG	1 cut(s)	357
BamHI	GGATCC	2 cut(s)	97, 421
BbsI	GAAGAC	2 cut(s)	187, 1494
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	4 cut(s)	547, 920, 941, 1244
BceAI	ACGGC	2 cut(s)	217, 286
BcoDI	GTCTC	2 cut(s)	29, 729
BfaI	CTAG	1 cut(s)	1233
BfmI	CTRYAG	1 cut(s)	645
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	3 cut(s)	220, 223, 782
BlsI	GCNGC	3 cut(s)	221, 224, 783
BmcAI	AGTACT	1 cut(s)	1231
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	99, 423
BmsI	GCATC	1 cut(s)	823
BpiI	GAAGAC	2 cut(s)	187, 1494
BpmI	CTGGAG	3 cut(s)	193, 199, 309
BsaBI	GATNNNNATC	1 cut(s)	1311
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	302, 1110, 1208
BsaXI	ACNNNNNCTCC	6 cut(s)	191, 197, 221, 227, 650, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 462, 463
Bse1I	ACTGG	2 cut(s)	386, 677
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	1047
Bse8I	GATNNNNATC	1 cut(s)	1311
BseDI	CCNNGG	3 cut(s)	302, 1110, 1208
BseGI	GGATG	1 cut(s)	1024
BseJI	GATNNNNATC	1 cut(s)	1311
BseLI	CCNNNNNNNGG	3 cut(s)	332, 462, 463
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	386, 677
BsePI	GCGCGC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	234
BseYI	CCCAGC	1 cut(s)	414
BsgI	GTGCAG	2 cut(s)	808, 1311
Bsh1236I	CGCG	2 cut(s)	21, 276
BshFI	GGCC	1 cut(s)	1479
BsiHKAI	GWGCWC	1 cut(s)	14
BslFI	GGGAC	2 cut(s)	131, 439
BslI	CCNNNNNNNGG	3 cut(s)	332, 462, 463
BsmAI	GTCTC	2 cut(s)	29, 729
BsmBI	CGTCTC	1 cut(s)	729
BsmFI	GGGAC	2 cut(s)	131, 439
BsmI	GAATGC	1 cut(s)	1144
BsnI	GGCC	1 cut(s)	1479
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	768
Bsp143I	GATC	5 cut(s)	97, 421, 439, 1312, 1317
Bsp19I	CCATGG	1 cut(s)	1110
BspACI	CCGC	7 cut(s)	130, 220, 616, 781, 820, 1356, 1407
BspANI	GGCC	1 cut(s)	1479
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	2 cut(s)	21, 276
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	99, 423
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	5 cut(s)	92, 105, 416, 429, 1320
BspQI	GCTCTTC	2 cut(s)	2, 1213
BspTNI	GGTCTC	1 cut(s)	29
BsrBI	CCGCTC	3 cut(s)	781, 1356, 1407
BsrDI	GCAATG	1 cut(s)	1047
BsrGI	TGTACA	1 cut(s)	768
BsrI	ACTGG	2 cut(s)	386, 677
BssECI	CCNNGG	3 cut(s)	302, 1110, 1208
BssHII	GCGCGC	1 cut(s)	274
BssMI	GATC	5 cut(s)	97, 421, 439, 1312, 1317
BssT1I	CCWWGG	1 cut(s)	1110
Bst4CI	ACNGT	1 cut(s)	1373
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstAUI	TGTACA	1 cut(s)	768
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	4 cut(s)	40, 357, 443, 977
BstDSI	CCRYGG	2 cut(s)	302, 1110
BstF5I	GGATG	1 cut(s)	1024
BstFNI	CGCG	2 cut(s)	21, 276
BstHHI	GCGC	3 cut(s)	21, 276, 278
BstKTI	GATC	5 cut(s)	100, 424, 442, 1315, 1320
BstMAI	GTCTC	2 cut(s)	29, 729
BstMBI	GATC	5 cut(s)	97, 421, 439, 1312, 1317
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 210, 219, 521, 1046, 1168, 1485
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	2 cut(s)	21, 276
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	2 cut(s)	187, 1494
BstX2I	RGATCY	2 cut(s)	97, 421
BstYI	RGATCY	2 cut(s)	97, 421
Bsu36I	CCTNAGG	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	1479
BtgI	CCRYGG	2 cut(s)	302, 1110
BtsCI	GGATG	1 cut(s)	1024
BtsI	GCAGTG	2 cut(s)	51, 791
BtsIMutI	CAGTG	2 cut(s)	51, 791
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	796
CfoI	GCGC	3 cut(s)	21, 276, 278
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	4 cut(s)	176, 769, 1230, 1473
CviAII	CATG	7 cut(s)	331, 428, 547, 797, 823, 1111, 1163
CviQI	GTAC	4 cut(s)	176, 769, 1230, 1473
DdeI	CTNAG	4 cut(s)	40, 357, 443, 977
DpnI	GATC	5 cut(s)	99, 423, 441, 1314, 1319
DpnII	GATC	5 cut(s)	97, 421, 439, 1312, 1317
DrdI	GACNNNNNNGTC	2 cut(s)	191, 542
DseDI	GACNNNNNNGTC	2 cut(s)	191, 542
Eco130I	CCWWGG	1 cut(s)	1110
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	1110
ErhI	CCWWGG	1 cut(s)	1110
Esp3I	CGTCTC	1 cut(s)	729
FaeI	CATG	7 cut(s)	334, 431, 550, 800, 826, 1114, 1166
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	2 cut(s)	131, 439
FatI	CATG	7 cut(s)	330, 427, 546, 796, 822, 1110, 1162
Fnu4HI	GCNGC	3 cut(s)	220, 223, 782
FokI	GGATG	1 cut(s)	1031
Fsp4HI	GCNGC	3 cut(s)	220, 223, 782
FspBI	CTAG	1 cut(s)	1233
GlaI	GCGC	3 cut(s)	20, 275, 277
GluI	GCNGC	3 cut(s)	220, 223, 782
GsaI	CCCAGC	1 cut(s)	418
GsuI	CTGGAG	3 cut(s)	193, 199, 309
HaeIII	GGCC	1 cut(s)	1479
HgaI	GACGC	1 cut(s)	10
HhaI	GCGC	3 cut(s)	21, 276, 278
Hin1II	CATG	7 cut(s)	334, 431, 550, 800, 826, 1114, 1166
Hin6I	GCGC	3 cut(s)	19, 274, 276
HinP1I	GCGC	3 cut(s)	19, 274, 276
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	3 cut(s)	793, 1091, 1271
HphI	GGTGA	6 cut(s)	16, 514, 649, 1001, 1088, 1144
Hpy166II	GTNNAC	3 cut(s)	316, 669, 769
Hpy188I	TCNGA	3 cut(s)	244, 966, 1317
Hpy188III	TCNNGA	7 cut(s)	326, 341, 356, 797, 1034, 1088, 1127
Hpy8I	GTNNAC	3 cut(s)	316, 669, 769
HpyAV	CCTTC	8 cut(s)	478, 634, 757, 1187, 1261, 1324, 1407, 1423
HpyCH4III	ACNGT	1 cut(s)	1373
HpyCH4IV	ACGT	1 cut(s)	1246
HpyCH4V	TGCA	5 cut(s)	550, 759, 789, 830, 1292
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 210, 219, 521, 1046, 1168, 1485
HpyF3I	CTNAG	4 cut(s)	40, 357, 443, 977
HpySE526I	ACGT	1 cut(s)	1246
Hsp92II	CATG	7 cut(s)	334, 431, 550, 800, 826, 1114, 1166
HspAI	GCGC	3 cut(s)	19, 274, 276
Kzo9I	GATC	5 cut(s)	97, 421, 439, 1312, 1317
LguI	GCTCTTC	2 cut(s)	2, 1213
LmnI	GCTCC	5 cut(s)	218, 658, 1159, 1353, 1404
Lsp1109I	GCAGC	1 cut(s)	234
LweI	GCATC	1 cut(s)	823
MaeI	CTAG	1 cut(s)	1233
MaeII	ACGT	1 cut(s)	1246
MaeIII	GTNAC	2 cut(s)	701, 1367
MalI	GATC	5 cut(s)	99, 423, 441, 1314, 1319
MbiI	CCGCTC	3 cut(s)	781, 1356, 1407
MboI	GATC	5 cut(s)	97, 421, 439, 1312, 1317
MflI	RGATCY	2 cut(s)	97, 421
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	3 cut(s)	59, 307, 368
MmeI	TCCRAC	3 cut(s)	97, 828, 895
MroXI	GAANNNNTTC	1 cut(s)	1083
MseI	TTAA	2 cut(s)	836, 954
MslI	CAYNNNNRTG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	1144
MvnI	CGCG	2 cut(s)	21, 276
MwoI	GCNNNNNNNGC	7 cut(s)	18, 210, 219, 521, 1046, 1168, 1485
NcoI	CCATGG	1 cut(s)	1110
NdeII	GATC	5 cut(s)	97, 421, 439, 1312, 1317
NlaIII	CATG	7 cut(s)	334, 431, 550, 800, 826, 1114, 1166
NlaIV	GGNNCC	2 cut(s)	99, 423
PagI	TCATGA	1 cut(s)	796
PauI	GCGCGC	1 cut(s)	274
PciSI	GCTCTTC	2 cut(s)	2, 1213
PctI	GAATGC	1 cut(s)	1144
PdmI	GAANNNNTTC	1 cut(s)	1083
PfeI	GAWTC	3 cut(s)	793, 1091, 1271
PkrI	GCNGC	3 cut(s)	221, 224, 783
PspFI	CCCAGC	1 cut(s)	414
PspN4I	GGNNCC	2 cut(s)	99, 423
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	97, 421
PteI	GCGCGC	1 cut(s)	274
RsaI	GTAC	4 cut(s)	177, 770, 1231, 1474
RsaNI	GTAC	4 cut(s)	176, 769, 1230, 1473
RseI	CAYNNNNRTG	1 cut(s)	551
SapI	GCTCTTC	2 cut(s)	2, 1213
SaqAI	TTAA	2 cut(s)	836, 954
SatI	GCNGC	3 cut(s)	220, 223, 782
Sau3AI	GATC	5 cut(s)	97, 421, 439, 1312, 1317
Sau96I	GGNCC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	1231
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	823
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	551
Sse9I	AATT	3 cut(s)	59, 307, 368
SsiI	CCGC	7 cut(s)	130, 220, 616, 781, 820, 1356, 1407
SspI	AATATT	1 cut(s)	1098
SspMI	CTAG	1 cut(s)	1233
StyI	CCWWGG	1 cut(s)	1110
TaaI	ACNGT	1 cut(s)	1373
TaiI	ACGT	1 cut(s)	1249
TaqI	TCGA	3 cut(s)	171, 342, 534
TasI	AATT	3 cut(s)	59, 307, 368
TatI	WGTACW	3 cut(s)	768, 1229, 1472
TauI	GCSGC	2 cut(s)	222, 784
TfiI	GAWTC	3 cut(s)	793, 1091, 1271
Tru1I	TTAA	2 cut(s)	836, 954
Tru9I	TTAA	2 cut(s)	836, 954
TscAI	CASTG	2 cut(s)	58, 791
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	4 cut(s)	888, 1206, 1280, 1494
TspRI	CASTG	2 cut(s)	58, 791
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	59, 307
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	1 cut(s)	1233
ZrmI	AGTACT	1 cut(s)	1231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.