Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000708.1

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Forward (+)

51092 .. 52768

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000708.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1677 bp

atggtgaagagcacagagcgcgtctgccactacgaaaccttaggcctcgaaccaaattgctcagaaaaagaaatcaaggctgctcacaggaaactaatcctcacgtaccattgggacaaatgtagatcatcccaatgcggcttgtcccaagaagaagccactgccaaatctttagaggtccaacaagcctacgaaatccttatggatcccataaagcgagaaacctataacgcctaccgccagacctacgctgtccctgaagttttcaaccccgacctcgacgtcccctttgacagcatcgtcttcaacggctactccagctccagccgcagcttctacaatgcctactctgccatttttcaaaggatttacgccaacgagcgcgcttttcaaaagaagaacgacctgccgtggaattcggttcacaagcctccagacatgggcaatctcgacaccccttatcctgaggttgtccaattttacaactactggctcaactttagttccataatggatttctgctgggaggatccacatgatgagtatgatctaagtcagatctcccgcaaaggggtgaaggaatggtcccgcataaacatgaaggcgaggaagaaagcaaagaaggaatacaacaataaggtgcggtgtttgacacaaactgcgaaaaggctcgacaggagggtcgtgcagatggtagcgaagagggaggaggagagaaagagggagatagaggaggagagggagaggaggaagcggttgaagaaagagaagttggtgaaggctatggagtatgaggagcaggagtggacgaaaccggttgagaggaagagaaaatatagtaacaaggaggaggaggaggaggaggaaaaagggagagacgaatgggagtgtgtagtctgcaggaaggtgtttaggagtgagcggcagtgcagaaatcatgagcaatcaaaaaagcatctccgcatggttgcagagttaatggagttgttggaggtttcggaggaaaaaccagatgaagaagaggttttggaggaaggaaaaaggaatgaggtggttggagggagtgatagcgaagcggagtttgttgatggtgttaatgataatcagagggaaaagcttagtgaaacaggtgaagttgatgatgaggaagtggaggaggatgagattggtgttcttgaagcaatggtggcgaggcgaaagacgatggaagaggttggtgaagatattcttgaatcaatattggttgaacccatggcgagtagtagtcaagaggtgaagaatgcagacgaggtggctatggagcatgacaagctaaagaacaccaatcagaatgaaggagaaaggaaaccgaggagaagaagagccaagagtaatagaactgacgaacgtgatggttcaaatatgaaggaatccaaacctgattgtagtgcagaaaaaggatatgatgaggatcagatcaacaaaaggaagggtggagagaggaaagagaggagcggtaagaagagtaacggtaaaggagatattgagcataagaaaatgaggagtggaggaaggagtgaagagaagaagggtaagaagagaaatggtggagaaagaagaattaatgaacatggtacatcctatttttctgctgtgaataagagttatctgaacatattacatctgatattcatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

558

Amino Acids

65.63

Weight (kDa)

6.08

Isoelectric Point (pI)

59.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	281, 299, 680
AatII	GACGTC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	414
AccBSI	CCGCTC	2 cut(s)	922, 1494
AccII	CGCG	2 cut(s)	21, 384
AclWI	GGATC	5 cut(s)	200, 213, 524, 537, 1458
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	279
AcyI	GRCGYC	1 cut(s)	282
AfaI	GTAC	2 cut(s)	107, 1615
AfiI	CCNNNNNNNGG	3 cut(s)	440, 570, 571
AgeI	ACCGGT	1 cut(s)	814
AgsI	TTSAA	9 cut(s)	268, 307, 362, 392, 760, 1178, 1232, 1247, 1398
AjuI	GAANNNNNNNTTGG	2 cut(s)	755, 787
AluBI	AGCT	4 cut(s)	321, 333, 1117, 1312
AluI	AGCT	4 cut(s)	321, 333, 1117, 1312
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	870
AlwI	GGATC	5 cut(s)	200, 213, 524, 537, 1458
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	2 cut(s)	80, 330
ApoI	RAATTY	1 cut(s)	415
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AseI	ATTAAT	1 cut(s)	1602
AsiGI	ACCGGT	1 cut(s)	814
Asp700I	GAANNNNTTC	1 cut(s)	1224
AspLEI	GCGC	3 cut(s)	21, 384, 386
AspS9I	GGNCC	2 cut(s)	178, 585
AsuHPI	GGTGA	6 cut(s)	16, 586, 787, 1142, 1229, 1285
AvaII	GGWCC	2 cut(s)	178, 585
AxyI	CCTNAGG	2 cut(s)	40, 465
BamHI	GGATCC	2 cut(s)	205, 529
BbsI	GAAGAC	1 cut(s)	295
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	67, 342
BccI	CCATC	4 cut(s)	685, 1082, 1198, 1385
BceAI	ACGGC	2 cut(s)	325, 394
BcoDI	GTCTC	1 cut(s)	870
BfmI	CTRYAG	1 cut(s)	898
BfuAI	ACCTGC	1 cut(s)	414
BglII	AGATCT	1 cut(s)	558
BisI	GCNGC	5 cut(s)	81, 139, 328, 331, 923
BlsI	GCNGC	5 cut(s)	82, 140, 329, 332, 924
Bme18I	GGWCC	2 cut(s)	178, 585
BmgT120I	GGNCC	2 cut(s)	178, 585
BmiI	GGNNCC	3 cut(s)	207, 531, 587
BmsI	GCATC	2 cut(s)	306, 964
BpiI	GAAGAC	1 cut(s)	295
BpmI	CTGGAG	3 cut(s)	301, 307, 417
BsaAI	YACGTR	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	1449
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	410, 1251, 1349
BsaWI	WCCGGW	1 cut(s)	814
BsaXI	ACNNNNNCTCC	6 cut(s)	299, 305, 329, 335, 788, 818
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 570, 571
Bse118I	RCCGGY	1 cut(s)	814
Bse1I	ACTGG	1 cut(s)	494
Bse21I	CCTNAGG	2 cut(s)	40, 465
Bse3DI	GCAATG	1 cut(s)	1188
Bse8I	GATNNNNATC	1 cut(s)	1449
BseDI	CCNNGG	3 cut(s)	410, 1251, 1349
BseGI	GGATG	3 cut(s)	128, 1165, 1616
BseJI	GATNNNNATC	1 cut(s)	1449
BseLI	CCNNNNNNNGG	3 cut(s)	440, 570, 571
BseMI	GCAATG	1 cut(s)	1188
BseMII	CTCAG	2 cut(s)	75, 456
BseNI	ACTGG	1 cut(s)	494
BsePI	GCGCGC	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	67, 342
BseYI	CCCAGC	1 cut(s)	522
BsgI	GTGCAG	3 cut(s)	707, 949, 1449
Bsh1236I	CGCG	2 cut(s)	21, 384
BshFI	GGCC	1 cut(s)	45
BshTI	ACCGGT	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	815
BslFI	GGGAC	5 cut(s)	128, 130, 239, 269, 571
BslI	CCNNNNNNNGG	3 cut(s)	440, 570, 571
BsmAI	GTCTC	1 cut(s)	870
BsmBI	CGTCTC	1 cut(s)	870
BsmFI	GGGAC	5 cut(s)	128, 130, 239, 269, 571
BsmI	GAATGC	1 cut(s)	1285
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	7 cut(s)	125, 205, 529, 547, 558, 1450, 1455
Bsp19I	CCATGG	1 cut(s)	1251
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	74, 457
BspFNI	CGCG	2 cut(s)	21, 384
BspHI	TCATGA	1 cut(s)	937
BspLI	GGNNCC	3 cut(s)	207, 531, 587
BspMAI	CTGCAG	1 cut(s)	902
BspMI	ACCTGC	1 cut(s)	414
BspPI	GGATC	5 cut(s)	200, 213, 524, 537, 1458
BspQI	GCTCTTC	2 cut(s)	2, 1354
BsrBI	CCGCTC	2 cut(s)	922, 1494
BsrDI	GCAATG	1 cut(s)	1188
BsrFI	RCCGGY	1 cut(s)	814
BsrI	ACTGG	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	814
BssECI	CCNNGG	3 cut(s)	410, 1251, 1349
BssHII	GCGCGC	1 cut(s)	382
BssMI	GATC	7 cut(s)	125, 205, 529, 547, 558, 1450, 1455
BssNI	GRCGYC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	1251
Bst4CI	ACNGT	1 cut(s)	1511
Bst6I	CTCTTC	9 cut(s)	2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
BstACI	GRCGYC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	5 cut(s)	40, 61, 465, 551, 1118
BstDSI	CCRYGG	2 cut(s)	410, 1251
BstF5I	GGATG	3 cut(s)	128, 1165, 1616
BstFNI	CGCG	2 cut(s)	21, 384
BstHHI	GCGC	3 cut(s)	21, 384, 386
BstKTI	GATC	7 cut(s)	128, 208, 532, 550, 561, 1453, 1458
BstMAI	GTCTC	1 cut(s)	870
BstMBI	GATC	7 cut(s)	125, 205, 529, 547, 558, 1450, 1455
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 318, 327, 350, 1187, 1309
BstSFI	CTRYAG	1 cut(s)	898
BstUI	CGCG	2 cut(s)	21, 384
BstV1I	GCAGC	2 cut(s)	67, 342
BstV2I	GAAGAC	1 cut(s)	295
BstX2I	RGATCY	3 cut(s)	205, 529, 558
BstYI	RGATCY	3 cut(s)	205, 529, 558
Bsu36I	CCTNAGG	2 cut(s)	40, 465
BsuRI	GGCC	1 cut(s)	45
BtgI	CCRYGG	2 cut(s)	410, 1251
BtsCI	GGATG	3 cut(s)	128, 1165, 1616
BtsI	GCAGTG	2 cut(s)	159, 932
BtsIMutI	CAGTG	2 cut(s)	159, 932
BveI	ACCTGC	1 cut(s)	414
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	937
CfoI	GCGC	3 cut(s)	21, 384, 386
Cfr10I	RCCGGY	1 cut(s)	814
Cfr13I	GGNCC	2 cut(s)	178, 585
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	106, 1614
CspAI	ACCGGT	1 cut(s)	814
CviAII	CATG	8 cut(s)	439, 536, 598, 938, 964, 1252, 1304, 1610
CviQI	GTAC	2 cut(s)	106, 1614
DdeI	CTNAG	5 cut(s)	40, 61, 465, 551, 1118
DpnI	GATC	7 cut(s)	127, 207, 531, 549, 560, 1452, 1457
DpnII	GATC	7 cut(s)	125, 205, 529, 547, 558, 1450, 1455
DrdI	GACNNNNNNGTC	3 cut(s)	281, 299, 680
DseDI	GACNNNNNNGTC	3 cut(s)	281, 299, 680
Eam1104I	CTCTTC	9 cut(s)	2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
EarI	CTCTTC	9 cut(s)	2, 695, 821, 1014, 1203, 1354, 1496, 1554, 1571
Eco130I	CCWWGG	1 cut(s)	1251
Eco147I	AGGCCT	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	178, 585
Eco57I	CTGAAG	1 cut(s)	279
Eco81I	CCTNAGG	2 cut(s)	40, 465
EcoRI	GAATTC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	1251
ErhI	CCWWGG	1 cut(s)	1251
Esp3I	CGTCTC	1 cut(s)	870
FaeI	CATG	8 cut(s)	442, 539, 601, 941, 967, 1255, 1307, 1613
FalI	AAGNNNNNCTT	2 cut(s)	1212, 1244
FaqI	GGGAC	5 cut(s)	128, 130, 239, 269, 571
FatI	CATG	8 cut(s)	438, 535, 597, 937, 963, 1251, 1303, 1609
FauI	CCCGC	2 cut(s)	572, 596
Fnu4HI	GCNGC	5 cut(s)	81, 139, 328, 331, 923
FokI	GGATG	3 cut(s)	115, 1172, 1603
Fsp4HI	GCNGC	5 cut(s)	81, 139, 328, 331, 923
GlaI	GCGC	3 cut(s)	20, 383, 385
GluI	GCNGC	5 cut(s)	81, 139, 328, 331, 923
GsaI	CCCAGC	1 cut(s)	526
GsuI	CTGGAG	3 cut(s)	301, 307, 417
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	815
HgaI	GACGC	1 cut(s)	10
HhaI	GCGC	3 cut(s)	21, 384, 386
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	8 cut(s)	442, 539, 601, 941, 967, 1255, 1307, 1613
Hin6I	GCGC	3 cut(s)	19, 382, 384
HinP1I	GCGC	3 cut(s)	19, 382, 384
HindIII	AAGCTT	1 cut(s)	1115
HinfI	GANTC	2 cut(s)	1232, 1409
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	6 cut(s)	16, 586, 787, 1142, 1229, 1285
Hpy166II	GTNNAC	2 cut(s)	424, 807
Hpy188I	TCNGA	8 cut(s)	64, 558, 1000, 1107, 1329, 1455, 1650, 1665
Hpy188III	TCNNGA	7 cut(s)	434, 449, 464, 938, 1175, 1229, 1268
Hpy8I	GTNNAC	2 cut(s)	424, 807
Hpy99I	CGWCG	1 cut(s)	284
HpyCH4III	ACNGT	1 cut(s)	1511
HpyCH4IV	ACGT	3 cut(s)	104, 282, 1387
HpyCH4V	TGCA	6 cut(s)	688, 900, 930, 971, 1283, 1430
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 318, 327, 350, 1187, 1309
HpyF3I	CTNAG	5 cut(s)	40, 61, 465, 551, 1118
HpySE526I	ACGT	3 cut(s)	104, 282, 1387
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	8 cut(s)	442, 539, 601, 941, 967, 1255, 1307, 1613
HspAI	GCGC	3 cut(s)	19, 382, 384
Kzo9I	GATC	7 cut(s)	125, 205, 529, 547, 558, 1450, 1455
LguI	GCTCTTC	2 cut(s)	2, 1354
LmnI	GCTCC	4 cut(s)	326, 796, 1300, 1491
Lsp1109I	GCAGC	2 cut(s)	67, 342
LweI	GCATC	2 cut(s)	306, 964
MaeII	ACGT	3 cut(s)	104, 282, 1387
MaeIII	GTNAC	2 cut(s)	839, 1505
MalI	GATC	7 cut(s)	127, 207, 531, 549, 560, 1452, 1457
MbiI	CCGCTC	2 cut(s)	922, 1494
MboI	GATC	7 cut(s)	125, 205, 529, 547, 558, 1450, 1455
MflI	RGATCY	3 cut(s)	205, 529, 558
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	4 cut(s)	55, 415, 476, 1599
MmeI	TCCRAC	3 cut(s)	205, 969, 1036
MroXI	GAANNNNTTC	1 cut(s)	1224
MseI	TTAA	3 cut(s)	977, 1095, 1602
MslI	CAYNNNNRTG	2 cut(s)	133, 596
MspI	CCGG	1 cut(s)	815
Mva1269I	GAATGC	1 cut(s)	1285
MvnI	CGCG	2 cut(s)	21, 384
MwoI	GCNNNNNNNGC	6 cut(s)	18, 318, 327, 350, 1187, 1309
NcoI	CCATGG	1 cut(s)	1251
NdeII	GATC	7 cut(s)	125, 205, 529, 547, 558, 1450, 1455
NlaIII	CATG	8 cut(s)	442, 539, 601, 941, 967, 1255, 1307, 1613
NlaIV	GGNNCC	3 cut(s)	207, 531, 587
PagI	TCATGA	1 cut(s)	937
PauI	GCGCGC	1 cut(s)	382
PceI	AGGCCT	1 cut(s)	45
PciSI	GCTCTTC	2 cut(s)	2, 1354
PctI	GAATGC	1 cut(s)	1285
PdmI	GAANNNNTTC	1 cut(s)	1224
PfeI	GAWTC	2 cut(s)	1232, 1409
PinAI	ACCGGT	1 cut(s)	814
PkrI	GCNGC	5 cut(s)	82, 140, 329, 332, 924
Ppu21I	YACGTR	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	1602
PspFI	CCCAGC	1 cut(s)	522
PspN4I	GGNNCC	3 cut(s)	207, 531, 587
PspPI	GGNCC	2 cut(s)	178, 585
PstI	CTGCAG	1 cut(s)	902
PsuI	RGATCY	3 cut(s)	205, 529, 558
PteI	GCGCGC	1 cut(s)	382
RsaI	GTAC	2 cut(s)	107, 1615
RsaNI	GTAC	2 cut(s)	106, 1614
RseI	CAYNNNNRTG	2 cut(s)	133, 596
SapI	GCTCTTC	2 cut(s)	2, 1354
SaqAI	TTAA	3 cut(s)	977, 1095, 1602
SatI	GCNGC	5 cut(s)	81, 139, 328, 331, 923
Sau3AI	GATC	7 cut(s)	125, 205, 529, 547, 558, 1450, 1455
Sau96I	GGNCC	2 cut(s)	178, 585
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	306, 964
SfcI	CTRYAG	1 cut(s)	898
SinI	GGWCC	2 cut(s)	178, 585
SmiMI	CAYNNNNRTG	2 cut(s)	133, 596
Sse9I	AATT	4 cut(s)	55, 415, 476, 1599
SseBI	AGGCCT	1 cut(s)	45
SspI	AATATT	1 cut(s)	1239
StuI	AGGCCT	1 cut(s)	45
StyI	CCWWGG	1 cut(s)	1251
TaaI	ACNGT	1 cut(s)	1511
TaiI	ACGT	3 cut(s)	107, 285, 1390
TaqI	TCGA	4 cut(s)	48, 279, 450, 672
TasI	AATT	4 cut(s)	55, 415, 476, 1599
TauI	GCSGC	3 cut(s)	141, 330, 925
TfiI	GAWTC	2 cut(s)	1232, 1409
Tru1I	TTAA	3 cut(s)	977, 1095, 1602
Tru9I	TTAA	3 cut(s)	977, 1095, 1602
TscAI	CASTG	2 cut(s)	166, 932
TseI	GCWGC	2 cut(s)	80, 330
TspDTI	ATGAA	6 cut(s)	614, 1029, 1347, 1418, 1620, 1660
TspRI	CASTG	2 cut(s)	166, 932
VpaK11BI	GGWCC	2 cut(s)	178, 585
VspI	ATTAAT	1 cut(s)	1602
XapI	RAATTY	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	1224
ZraI	GACGTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.