Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005230.1

Orthogroup ID

OG0002151

Physical Location & Seq

Genomic Coordinates Reverse (-)

91396 .. 95331

Gene Structure 3936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005230.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

atggatcccataaagcgagaaacctataacgcctaccgccagacctacgctgtccctgaagttttcaaccccgacctcgacgtaccctttgacagcatcgtcttcaacggctactccagctccagccgcagcttctacaatgcctactctgacatttttcaaaggatttacgccaacgagcgcgcttttcaaaagaagaacgacctgccgtggaattcggttcacaagcctccagacatgggcaatctcgacaccccttatcctgaggttgttcaattttacaactactggctcaactttagttccataatggatttctgctgggaggatccacatgatgagtatgatctaagtcagatctcccgcaaaggggtgaaggaatggtcccgcataaacatgaaggcgaggaagaaagcaaagaaggaatacaacaataaggtgaggagtttggcacaaactgcgaaaaggctcgacaggagggtcatgcagatggtagcgaagagggaggtggagagaaagagggagatagaggaggagagggagaggaggaagcggttgaagaaagagaagttggtgaaggctatagagtatgaggagcaggagtggacgaaaccggttgagaggaagagaaaatatagtaacaaggaggaggaggaggaggaaaaagagagagacgaatgggagtgtgtagtttgcaggaaggtgtacaggagtgagcggcagtgcaggaatcatgagcaatcaaaaaagcatctccgcatggttgcagagttaatggagttgttggaggtttcggaggaaaaaccagatgaagaagaggttttggaggaaggaaaaaggaatgaggtggttggagggagtgatagcgaagcggagtttgttgatggtgttaatgataatcagagggaaaagcttagtgaaacaggtgaagttgatgatgaggaagtggaggaggatgagattggtgttcttgaagcaatggtggcgaggcgaaagacgatggaagaggttggtgaagatattcttgaatcaatattggttgaacccatggcgagtagtagtcaagaggtgaagaatgctgacgaggtggctatggagcatgacaagctaaagaacgccaataagaatgaaggagaaaggaaaccgaggagaagaagagccaagagtactagaactgacgaacgtgatggttcaaataatatgaaggaatccaaacctgattgtagtgcagaaaaaggatatgatgaggatcagatcaataaaaggaagggtggagagaggaaagagaggagcggtaagaagagtaacggtaaaggagatattgagcagaagaaaatgaggagcggaggaaggagtgaagagaagaagggtaagaagagaaatggtggagaaagaagaattaatgaacatgaaaaaagaatatccatacctacaatggctatggcagcaaaagatgtgtgtccagcgattggtattgatctcggaacaacttactcatgtgttggaatttggcaacatggtcacgttgagatcatagctaatgaccagggcaacagaacgacaccatcttatgttgcttttaccaacaatggtcgtttgattggcgatgccgctaagaatcgatcaagtctctacgaaccctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

548

Amino Acids

64.01

Weight (kDa)

6.03

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002151)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18280 FvH4_5g00881
rosa_chinensis	RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711
rosa_laevigata	RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720
rosa_multiflora	Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017
rosa_roxburghii	Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910
rosa_rugosa	Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200
rosa_samantha	Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200
rosa_wichuraiana	Rw0G002940 Rw7G016360 Rw7G016610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	98, 479
Acc36I	ACCTGC	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	1469
AccBSI	CCGCTC	3 cut(s)	718, 1293, 1344
AccII	CGCG	1 cut(s)	183
AclWI	GGATC	4 cut(s)	12, 323, 336, 1257
AcsI	RAATTY	2 cut(s)	214, 1506
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	84, 707, 1168
AfiI	CCNNNNNNNGG	4 cut(s)	239, 369, 370, 1469
AgeI	ACCGGT	1 cut(s)	613
AjnI	CCWGG	1 cut(s)	1545
AjuI	GAANNNNNNNTTGG	2 cut(s)	554, 586
AluBI	AGCT	5 cut(s)	120, 132, 913, 1108, 1538
AluI	AGCT	5 cut(s)	120, 132, 913, 1108, 1538
Alw26I	GTCTC	2 cut(s)	666, 1634
AlwI	GGATC	4 cut(s)	12, 323, 336, 1257
ApeKI	GCWGC	2 cut(s)	129, 1445
ApoI	RAATTY	2 cut(s)	214, 1506
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AseI	ATTAAT	1 cut(s)	1401
AsiGI	ACCGGT	1 cut(s)	613
Asp700I	GAANNNNTTC	1 cut(s)	1020
AspLEI	GCGC	2 cut(s)	183, 185
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	6 cut(s)	385, 451, 586, 938, 1025, 1081
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	264
BamHI	GGATCC	2 cut(s)	4, 328
BbsI	GAAGAC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	141, 1457
BccI	CCATC	5 cut(s)	484, 878, 994, 1181, 1573
BceAI	ACGGC	2 cut(s)	124, 193
BciT130I	CCWGG	1 cut(s)	1547
BcoDI	GTCTC	2 cut(s)	666, 1634
BfaI	CTAG	1 cut(s)	1170
BfmI	CTRYAG	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	357
BisI	GCNGC	5 cut(s)	127, 130, 719, 1446, 1611
BlsI	GCNGC	5 cut(s)	128, 131, 720, 1447, 1612
BmcAI	AGTACT	1 cut(s)	1168
Bme1390I	CCNGG	1 cut(s)	1547
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	3 cut(s)	6, 330, 386
BmrFI	CCNGG	1 cut(s)	1547
BmsI	GCATC	3 cut(s)	105, 760, 1597
BpiI	GAAGAC	1 cut(s)	94
BpmI	CTGGAG	3 cut(s)	100, 106, 216
Bsa29I	ATCGAT	1 cut(s)	1621
BsaBI	GATNNNNATC	1 cut(s)	1248
BsaJI	CCNNGG	4 cut(s)	209, 1047, 1145, 1546
BsaWI	WCCGGW	1 cut(s)	613
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 104, 128, 134, 587, 617
Bsc4I	CCNNNNNNNGG	4 cut(s)	239, 369, 370, 1469
Bse118I	RCCGGY	1 cut(s)	613
Bse1I	ACTGG	1 cut(s)	293
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	984
Bse8I	GATNNNNATC	1 cut(s)	1248
BseBI	CCWGG	1 cut(s)	1547
BseCI	ATCGAT	1 cut(s)	1621
BseDI	CCNNGG	4 cut(s)	209, 1047, 1145, 1546
BseGI	GGATG	1 cut(s)	961
BseJI	GATNNNNATC	1 cut(s)	1248
BseLI	CCNNNNNNNGG	4 cut(s)	239, 369, 370, 1469
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	293
BsePI	GCGCGC	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	141, 1457
BseYI	CCCAGC	1 cut(s)	321
BsgI	GTGCAG	2 cut(s)	745, 1248
Bsh1236I	CGCG	1 cut(s)	183
BshTI	ACCGGT	1 cut(s)	613
BshVI	ATCGAT	1 cut(s)	1621
BsiSI	CCGG	1 cut(s)	614
BslFI	GGGAC	2 cut(s)	38, 370
BslI	CCNNNNNNNGG	4 cut(s)	239, 369, 370, 1469
BsmAI	GTCTC	2 cut(s)	666, 1634
BsmBI	CGTCTC	1 cut(s)	666
BsmFI	GGGAC	2 cut(s)	38, 370
BsmI	GAATGC	1 cut(s)	1081
Bsp1407I	TGTACA	1 cut(s)	705
Bsp143I	GATC	9 cut(s)	4, 328, 346, 357, 1249, 1254, 1477, 1530, 1622
Bsp19I	CCATGG	1 cut(s)	1047
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	1621
BspFNI	CGCG	1 cut(s)	183
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	3 cut(s)	6, 330, 386
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	4 cut(s)	12, 323, 336, 1257
BspQI	GCTCTTC	1 cut(s)	1150
BsrBI	CCGCTC	3 cut(s)	718, 1293, 1344
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	1 cut(s)	613
BsrGI	TGTACA	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	613
BssECI	CCNNGG	4 cut(s)	209, 1047, 1145, 1546
BssHII	GCGCGC	1 cut(s)	181
BssMI	GATC	9 cut(s)	4, 328, 346, 357, 1249, 1254, 1477, 1530, 1622
BssT1I	CCWWGG	1 cut(s)	1047
Bst2UI	CCWGG	1 cut(s)	1547
Bst4CI	ACNGT	1 cut(s)	1310
Bst6I	CTCTTC	8 cut(s)	494, 620, 810, 999, 1150, 1295, 1353, 1370
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstAUI	TGTACA	1 cut(s)	705
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	4 cut(s)	264, 350, 914, 1614
BstDSI	CCRYGG	2 cut(s)	209, 1047
BstF5I	GGATG	1 cut(s)	961
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	2 cut(s)	183, 185
BstKTI	GATC	9 cut(s)	7, 331, 349, 360, 1252, 1257, 1480, 1533, 1625
BstMAI	GTCTC	2 cut(s)	666, 1634
BstMBI	GATC	9 cut(s)	4, 328, 346, 357, 1249, 1254, 1477, 1530, 1622
BstMWI	GCNNNNNNNGC	6 cut(s)	117, 126, 458, 983, 1105, 1445
BstNI	CCWGG	1 cut(s)	1547
BstSCI	CCNGG	1 cut(s)	1545
BstSFI	CTRYAG	1 cut(s)	582
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	141, 1457
BstV2I	GAAGAC	1 cut(s)	94
BstX2I	RGATCY	3 cut(s)	4, 328, 357
BstYI	RGATCY	3 cut(s)	4, 328, 357
Bsu15I	ATCGAT	1 cut(s)	1621
Bsu36I	CCTNAGG	1 cut(s)	264
BsuTUI	ATCGAT	1 cut(s)	1621
BtgI	CCRYGG	2 cut(s)	209, 1047
BtgZI	GCGATG	1 cut(s)	1620
BtsCI	GGATG	1 cut(s)	961
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	1 cut(s)	728
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	183
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	2 cut(s)	183, 185
Cfr10I	RCCGGY	1 cut(s)	613
Cfr13I	GGNCC	1 cut(s)	384
ClaI	ATCGAT	1 cut(s)	1621
Csp6I	GTAC	3 cut(s)	83, 706, 1167
CspAI	ACCGGT	1 cut(s)	613
CviQI	GTAC	3 cut(s)	83, 706, 1167
DdeI	CTNAG	4 cut(s)	264, 350, 914, 1614
DpnI	GATC	9 cut(s)	6, 330, 348, 359, 1251, 1256, 1479, 1532, 1624
DpnII	GATC	9 cut(s)	4, 328, 346, 357, 1249, 1254, 1477, 1530, 1622
DrdI	GACNNNNNNGTC	2 cut(s)	98, 479
DseDI	GACNNNNNNGTC	2 cut(s)	98, 479
Eam1104I	CTCTTC	8 cut(s)	494, 620, 810, 999, 1150, 1295, 1353, 1370
EarI	CTCTTC	8 cut(s)	494, 620, 810, 999, 1150, 1295, 1353, 1370
Eco130I	CCWWGG	1 cut(s)	1047
Eco47I	GGWCC	1 cut(s)	384
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	1545
EcoT14I	CCWWGG	1 cut(s)	1047
ErhI	CCWWGG	1 cut(s)	1047
Esp3I	CGTCTC	1 cut(s)	666
FalI	AAGNNNNNCTT	2 cut(s)	1008, 1040
FaqI	GGGAC	2 cut(s)	38, 370
FauI	CCCGC	2 cut(s)	371, 395
Fnu4HI	GCNGC	5 cut(s)	127, 130, 719, 1446, 1611
FokI	GGATG	1 cut(s)	968
Fsp4HI	GCNGC	5 cut(s)	127, 130, 719, 1446, 1611
FspBI	CTAG	1 cut(s)	1170
GlaI	GCGC	2 cut(s)	182, 184
GluI	GCNGC	5 cut(s)	127, 130, 719, 1446, 1611
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	3 cut(s)	100, 106, 216
HapII	CCGG	1 cut(s)	614
HhaI	GCGC	2 cut(s)	183, 185
Hin6I	GCGC	2 cut(s)	181, 183
HinP1I	GCGC	2 cut(s)	181, 183
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	4 cut(s)	730, 1028, 1208, 1618
HpaII	CCGG	1 cut(s)	614
HphI	GGTGA	6 cut(s)	385, 451, 586, 938, 1025, 1081
Hpy166II	GTNNAC	3 cut(s)	223, 606, 706
Hpy188I	TCNGA	6 cut(s)	151, 357, 796, 903, 1254, 1484
Hpy188III	TCNNGA	7 cut(s)	233, 248, 263, 734, 971, 1025, 1064
Hpy8I	GTNNAC	3 cut(s)	223, 606, 706
Hpy99I	CGWCG	1 cut(s)	83
HpyCH4III	ACNGT	1 cut(s)	1310
HpyCH4IV	ACGT	3 cut(s)	81, 1183, 1524
HpyCH4V	TGCA	5 cut(s)	487, 696, 726, 767, 1229
HpyF10VI	GCNNNNNNNGC	6 cut(s)	117, 126, 458, 983, 1105, 1445
HpyF3I	CTNAG	4 cut(s)	264, 350, 914, 1614
HpySE526I	ACGT	3 cut(s)	81, 1183, 1524
HspAI	GCGC	2 cut(s)	181, 183
Kzo9I	GATC	9 cut(s)	4, 328, 346, 357, 1249, 1254, 1477, 1530, 1622
LguI	GCTCTTC	1 cut(s)	1150
LmnI	GCTCC	5 cut(s)	125, 595, 1096, 1290, 1341
Lsp1109I	GCAGC	2 cut(s)	141, 1457
LweI	GCATC	3 cut(s)	105, 760, 1597
MaeI	CTAG	1 cut(s)	1170
MaeII	ACGT	3 cut(s)	81, 1183, 1524
MaeIII	GTNAC	3 cut(s)	638, 1304, 1520
MalI	GATC	9 cut(s)	6, 330, 348, 359, 1251, 1256, 1479, 1532, 1624
MbiI	CCGCTC	3 cut(s)	718, 1293, 1344
MboI	GATC	9 cut(s)	4, 328, 346, 357, 1249, 1254, 1477, 1530, 1622
MflI	RGATCY	3 cut(s)	4, 328, 357
MluCI	AATT	4 cut(s)	214, 275, 1398, 1506
MmeI	TCCRAC	3 cut(s)	765, 832, 1483
MroXI	GAANNNNTTC	1 cut(s)	1020
MseI	TTAA	3 cut(s)	773, 891, 1401
MslI	CAYNNNNRTG	2 cut(s)	395, 488
MspI	CCGG	1 cut(s)	614
MspR9I	CCNGG	1 cut(s)	1547
Mva1269I	GAATGC	1 cut(s)	1081
MvaI	CCWGG	1 cut(s)	1547
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	6 cut(s)	117, 126, 458, 983, 1105, 1445
NcoI	CCATGG	1 cut(s)	1047
NdeII	GATC	9 cut(s)	4, 328, 346, 357, 1249, 1254, 1477, 1530, 1622
NlaIV	GGNNCC	3 cut(s)	6, 330, 386
NmuCI	GTSAC	1 cut(s)	1520
PagI	TCATGA	1 cut(s)	733
PauI	GCGCGC	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	1150
PctI	GAATGC	1 cut(s)	1081
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	4 cut(s)	730, 1028, 1208, 1618
PflMI	CCANNNNNTGG	1 cut(s)	1469
PinAI	ACCGGT	1 cut(s)	613
PkrI	GCNGC	5 cut(s)	128, 131, 720, 1447, 1612
PshBI	ATTAAT	1 cut(s)	1401
Psp6I	CCWGG	1 cut(s)	1545
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	1545
PspN4I	GGNNCC	3 cut(s)	6, 330, 386
PspPI	GGNCC	1 cut(s)	384
PsuI	RGATCY	3 cut(s)	4, 328, 357
PteI	GCGCGC	1 cut(s)	181
RsaI	GTAC	3 cut(s)	84, 707, 1168
RsaNI	GTAC	3 cut(s)	83, 706, 1167
RseI	CAYNNNNRTG	2 cut(s)	395, 488
SapI	GCTCTTC	1 cut(s)	1150
SaqAI	TTAA	3 cut(s)	773, 891, 1401
SatI	GCNGC	5 cut(s)	127, 130, 719, 1446, 1611
Sau3AI	GATC	9 cut(s)	4, 328, 346, 357, 1249, 1254, 1477, 1530, 1622
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	1168
ScrFI	CCNGG	1 cut(s)	1547
SfaNI	GCATC	3 cut(s)	105, 760, 1597
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	2 cut(s)	395, 488
Sse9I	AATT	4 cut(s)	214, 275, 1398, 1506
SspI	AATATT	1 cut(s)	1035
SspMI	CTAG	1 cut(s)	1170
StyD4I	CCNGG	1 cut(s)	1545
StyI	CCWWGG	1 cut(s)	1047
TaaI	ACNGT	1 cut(s)	1310
TaiI	ACGT	3 cut(s)	84, 1186, 1527
TaqI	TCGA	4 cut(s)	78, 249, 471, 1621
TasI	AATT	4 cut(s)	214, 275, 1398, 1506
TatI	WGTACW	2 cut(s)	705, 1166
TauI	GCSGC	3 cut(s)	129, 721, 1613
TfiI	GAWTC	4 cut(s)	730, 1028, 1208, 1618
Tru1I	TTAA	3 cut(s)	773, 891, 1401
Tru9I	TTAA	3 cut(s)	773, 891, 1401
TscAI	CASTG	1 cut(s)	728
TseFI	GTSAC	1 cut(s)	1520
TseI	GCWGC	2 cut(s)	129, 1445
Tsp45I	GTSAC	1 cut(s)	1520
TspDTI	ATGAA	6 cut(s)	413, 825, 1143, 1217, 1419, 1425
TspRI	CASTG	1 cut(s)	728
Van91I	CCANNNNNTGG	1 cut(s)	1469
VpaK11BI	GGWCC	1 cut(s)	384
VspI	ATTAAT	1 cut(s)	1401
XapI	RAATTY	2 cut(s)	214, 1506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1432
XmnI	GAANNNNTTC	1 cut(s)	1020
XspI	CTAG	1 cut(s)	1170
ZrmI	AGTACT	1 cut(s)	1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.