RchiOBHm_Chr2g0129321

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002151
Physical Location & Seq
Reverse (-)
44981560 .. 44981997
438 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50097

Sequence Viewer

Length: 438 bp
ATGGATCCCATAAAGCGAGAAACCTATAACGCCTACCGCCAGACATACGCTGTCCCTGAAGTTTTCAACCCCGACCTCGAAGTACCCTTTGACAACATCGTCTTCAACGGCTACTCCAGCTCCAGCCGCAGCTTCTACAATGCCTACTCTGACATTTTTCAAAGGATTTACGCCAACGAGCGCGCTTTTCAAAAGAAGAACGACCTGCCGTGGAATTCGGTTCACAAGCCTCCAGACATGGGCAATCTCGACACCCCTTATCCTGAGGTTGTTCAATTTTTCAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCACATGATGAGTATGATCTAAGTCAGGTGTCCCGGAGAGGGGTGAAGCTTTGGTCCCGCATAAAATATGAAGGCGAGGAAGAAAGCAAAGAAGGAATACAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

145

Amino Acids

17.32

Weight (kDa)

4.73

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZUO1-like_ZHD PF21884 52 - 128 3.3e-09 Zuotin-like, zuotin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
Acc36I ACCTGC 1 cut(s) 213
AccII CGCG 1 cut(s) 183
AciI CCGC 3 cut(s) 37, 127, 388
AclWI GGATC 3 cut(s) 12, 323, 336
AcsI RAATTY 1 cut(s) 214
AcuI CTGAAG 1 cut(s) 78
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 3 cut(s) 239, 369, 370
AgsI TTSAA 6 cut(s) 67, 106, 161, 191, 275, 283
AluBI AGCT 3 cut(s) 120, 132, 379
AluI AGCT 3 cut(s) 120, 132, 379
AlwI GGATC 3 cut(s) 12, 323, 336
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 214
AspLEI GCGC 2 cut(s) 183, 185
AspS9I GGNCC 1 cut(s) 384
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 384
AxyI CCTNAGG 1 cut(s) 264
BamHI GGATCC 2 cut(s) 4, 328
BbsI GAAGAC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 141
BceAI ACGGC 2 cut(s) 124, 193
BcnI CCSGG 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 2 cut(s) 127, 130
BlsI GCNGC 2 cut(s) 128, 131
Bme1390I CCNGG 1 cut(s) 364
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 3 cut(s) 6, 330, 386
BmrFI CCNGG 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 3 cut(s) 100, 106, 216
BpuMI CCSGG 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 209
BsaXI ACNNNNNCTCC 4 cut(s) 98, 104, 128, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 369, 370
Bse1I ACTGG 1 cut(s) 293
Bse21I CCTNAGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 209
BseLI CCNNNNNNNGG 3 cut(s) 239, 369, 370
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 293
BsePI GCGCGC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 141
BseYI CCCAGC 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 364
BslFI GGGAC 3 cut(s) 38, 346, 370
BslI CCNNNNNNNGG 3 cut(s) 239, 369, 370
BsmFI GGGAC 3 cut(s) 38, 346, 370
Bsp143I GATC 3 cut(s) 4, 328, 346
BspACI CCGC 3 cut(s) 37, 127, 388
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 183
BspLI GGNNCC 3 cut(s) 6, 330, 386
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 3 cut(s) 12, 323, 336
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 209
BssHII GCGCGC 1 cut(s) 181
BssMI GATC 3 cut(s) 4, 328, 346
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 264, 350
BstDSI CCRYGG 1 cut(s) 209
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 2 cut(s) 183, 185
BstKTI GATC 3 cut(s) 7, 331, 349
BstMBI GATC 3 cut(s) 4, 328, 346
BstMWI GCNNNNNNNGC 2 cut(s) 117, 126
BstSCI CCNGG 1 cut(s) 362
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 2 cut(s) 4, 328
BstYI RGATCY 2 cut(s) 4, 328
Bsu36I CCTNAGG 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 209
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 2 cut(s) 183, 185
Cfr13I GGNCC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 238, 335
CviJI RGCY 7 cut(s) 111, 120, 126, 132, 229, 292, 379
CviKI_1 RGCY 7 cut(s) 111, 120, 126, 132, 229, 292, 379
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 264, 350
DpnI GATC 3 cut(s) 6, 330, 348
DpnII GATC 3 cut(s) 4, 328, 346
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 214
FaeI CATG 2 cut(s) 241, 338
FaiI YATR 9 cut(s) 11, 27, 46, 239, 308, 336, 345, 392, 399
FaqI GGGAC 3 cut(s) 38, 346, 370
FatI CATG 2 cut(s) 237, 334
FauI CCCGC 1 cut(s) 395
Fnu4HI GCNGC 2 cut(s) 127, 130
Fsp4HI GCNGC 2 cut(s) 127, 130
GlaI GCGC 2 cut(s) 182, 184
GluI GCNGC 2 cut(s) 127, 130
GsaI CCCAGC 1 cut(s) 325
GsuI CTGGAG 3 cut(s) 100, 106, 216
HapII CCGG 1 cut(s) 364
HhaI GCGC 2 cut(s) 183, 185
Hin1II CATG 2 cut(s) 241, 338
Hin6I GCGC 2 cut(s) 181, 183
HinP1I GCGC 2 cut(s) 181, 183
HindIII AAGCTT 1 cut(s) 377
HpaII CCGG 1 cut(s) 364
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 3 cut(s) 233, 248, 263
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 395, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 126
HpyF3I CTNAG 2 cut(s) 264, 350
Hsp92II CATG 2 cut(s) 241, 338
HspAI GCGC 2 cut(s) 181, 183
Kzo9I GATC 3 cut(s) 4, 328, 346
LmnI GCTCC 1 cut(s) 125
Lsp1109I GCAGC 1 cut(s) 141
MalI GATC 3 cut(s) 6, 330, 348
MboI GATC 3 cut(s) 4, 328, 346
MboII GAAGA 3 cut(s) 94, 208, 422
MflI RGATCY 2 cut(s) 4, 328
MluCI AATT 2 cut(s) 214, 275
MnlI CCTC 6 cut(s) 86, 240, 259, 319, 362, 400
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 1 cut(s) 364
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 117, 126
NciI CCSGG 1 cut(s) 364
NdeII GATC 3 cut(s) 4, 328, 346
NlaIII CATG 2 cut(s) 241, 338
NlaIV GGNNCC 3 cut(s) 6, 330, 386
PauI GCGCGC 1 cut(s) 181
PfoI TCCNGGA 1 cut(s) 362
PkrI GCNGC 2 cut(s) 128, 131
PspFI CCCAGC 1 cut(s) 321
PspN4I GGNNCC 3 cut(s) 6, 330, 386
PspPI GGNCC 1 cut(s) 384
PsuI RGATCY 2 cut(s) 4, 328
PteI GCGCGC 1 cut(s) 181
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SatI GCNGC 2 cut(s) 127, 130
Sau3AI GATC 3 cut(s) 4, 328, 346
Sau96I GGNCC 1 cut(s) 384
ScrFI CCNGG 1 cut(s) 364
SetI ASST 8 cut(s) 26, 78, 122, 134, 207, 270, 360, 381
SinI GGWCC 1 cut(s) 384
Sse9I AATT 2 cut(s) 214, 275
SsiI CCGC 3 cut(s) 37, 127, 388
StyD4I CCNGG 1 cut(s) 362
TaqI TCGA 2 cut(s) 78, 249
TasI AATT 2 cut(s) 214, 275
TauI GCSGC 1 cut(s) 129
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.