dnaJ homolog subfamily C member
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g18280 FvH4_5g00881 |
| rosa_chinensis | RchiOBHm_Chr2g0129311 RchiOBHm_Chr2g0129321 RchiOBHm_Chr7g0200501 RchiOBHm_Chr7g0200511 RchiOBHm_Chr7g0200711 |
| rosa_laevigata | RLG00000001973 RLG00000003685 RLG00000003700 RLG00000003704 RLG00000003705 RLG00000003720 |
| rosa_multiflora | Rmu_sc0000617.1_g000002 Rmu_sc0000617.1_g000021 Rmu_sc0000617.1_g000022 Rmu_sc0000708.1_g000001 Rmu_sc0000708.1_g000002 Rmu_sc0000708.1_g000010 Rmu_sc0000785.1_g000029 Rmu_sc0000785.1_g000030 Rmu_sc0005230.1_g000017 |
| rosa_roxburghii | Rroxscaffold_3G00255460 Rroxscaffold_3G00255630 Rroxscaffold_3G00255800 Rroxscaffold_3G00255810 Rroxscaffold_3G00255910 |
| rosa_rugosa | Rorug05G0441400.1 Rorug07G0060700 Rorug07G0061200 |
| rosa_samantha | Rh2DG363700 Rh2DG363800 Rh7AG187000 Rh7AG188800 Rh7AG188900 Rh7BG189300 Rh7BG190200 Rh7BG192000 Rh7DG190400 Rh7DG190900 Rh7DG194200 |
| rosa_wichuraiana | Rw0G002940 Rw7G016360 Rw7G016610 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 299, 680 |
| Acc36I | ACCTGC | 2 cut(s) | 414, 1426 |
| AccBSI | CCGCTC | 2 cut(s) | 919, 1494 |
| AccI | GTMKAC | 1 cut(s) | 345 |
| AccII | CGCG | 2 cut(s) | 21, 384 |
| AciI | CCGC | 9 cut(s) | 138, 238, 328, 565, 643, 754, 919, 958, 1494 |
| AclWI | GGATC | 5 cut(s) | 200, 213, 524, 537, 1458 |
| AcsI | RAATTY | 2 cut(s) | 167, 415 |
| AcuI | CTGAAG | 1 cut(s) | 279 |
| AfaI | GTAC | 4 cut(s) | 107, 285, 1149, 1615 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 440, 570, 571 |
| AflIII | ACRYGT | 1 cut(s) | 1653 |
| AgeI | ACCGGT | 1 cut(s) | 814 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 755, 787 |
| AluBI | AGCT | 4 cut(s) | 321, 333, 1114, 1312 |
| AluI | AGCT | 4 cut(s) | 321, 333, 1114, 1312 |
| Alw21I | GWGCWC | 1 cut(s) | 14 |
| Alw26I | GTCTC | 2 cut(s) | 29, 867 |
| AlwI | GGATC | 5 cut(s) | 200, 213, 524, 537, 1458 |
| AoxI | GGCC | 1 cut(s) | 43 |
| ApeKI | GCWGC | 2 cut(s) | 80, 330 |
| ApoI | RAATTY | 2 cut(s) | 167, 415 |
| AseI | ATTAAT | 1 cut(s) | 1602 |
| AsiGI | ACCGGT | 1 cut(s) | 814 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1224 |
| AspLEI | GCGC | 3 cut(s) | 21, 384, 386 |
| AspS9I | GGNCC | 2 cut(s) | 178, 585 |
| AsuHPI | GGTGA | 6 cut(s) | 16, 586, 787, 1139, 1229, 1285 |
| AvaII | GGWCC | 2 cut(s) | 178, 585 |
| AxyI | CCTNAGG | 2 cut(s) | 40, 465 |
| BamHI | GGATCC | 2 cut(s) | 205, 529 |
| BbsI | GAAGAC | 1 cut(s) | 295 |
| Bbv12I | GWGCWC | 1 cut(s) | 14 |
| BbvI | GCAGC | 2 cut(s) | 67, 342 |
| BccI | CCATC | 5 cut(s) | 685, 1079, 1159, 1198, 1385 |
| BceAI | ACGGC | 3 cut(s) | 236, 325, 394 |
| BcoDI | GTCTC | 2 cut(s) | 29, 867 |
| BfmI | CTRYAG | 1 cut(s) | 895 |
| BfuAI | ACCTGC | 2 cut(s) | 414, 1426 |
| BglII | AGATCT | 1 cut(s) | 558 |
| BisI | GCNGC | 6 cut(s) | 81, 139, 328, 331, 920, 1495 |
| BlsI | GCNGC | 6 cut(s) | 82, 140, 329, 332, 921, 1496 |
| BmcAI | AGTACT | 1 cut(s) | 1149 |
| Bme18I | GGWCC | 2 cut(s) | 178, 585 |
| BmgT120I | GGNCC | 2 cut(s) | 178, 585 |
| BmiI | GGNNCC | 3 cut(s) | 207, 531, 587 |
| BmsI | GCATC | 1 cut(s) | 961 |
| BpiI | GAAGAC | 1 cut(s) | 295 |
| BpmI | CTGGAG | 4 cut(s) | 301, 307, 417, 1172 |
| BsaAI | YACGTR | 1 cut(s) | 105 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1449 |
| BsaI | GGTCTC | 1 cut(s) | 29 |
| BsaJI | CCNNGG | 3 cut(s) | 410, 1251, 1349 |
| BsaWI | WCCGGW | 1 cut(s) | 814 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 299, 305, 329, 335, 788, 818 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 440, 570, 571 |
| Bse118I | RCCGGY | 1 cut(s) | 814 |
| Bse1I | ACTGG | 2 cut(s) | 494, 1155 |
| Bse21I | CCTNAGG | 2 cut(s) | 40, 465 |
| Bse3DI | GCAATG | 1 cut(s) | 1188 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1449 |
| BseDI | CCNNGG | 3 cut(s) | 410, 1251, 1349 |
| BseGI | GGATG | 3 cut(s) | 128, 1165, 1616 |
| BseJI | GATNNNNATC | 1 cut(s) | 1449 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 440, 570, 571 |
| BseMI | GCAATG | 1 cut(s) | 1188 |
| BseMII | CTCAG | 2 cut(s) | 75, 456 |
| BseNI | ACTGG | 2 cut(s) | 494, 1155 |
| BsePI | GCGCGC | 1 cut(s) | 382 |
| BseXI | GCAGC | 2 cut(s) | 67, 342 |
| BseYI | CCCAGC | 1 cut(s) | 522 |
| BsgI | GTGCAG | 1 cut(s) | 1449 |
| Bsh1236I | CGCG | 2 cut(s) | 21, 384 |
| BshFI | GGCC | 1 cut(s) | 45 |
| BshTI | ACCGGT | 1 cut(s) | 814 |
| BsiHKAI | GWGCWC | 1 cut(s) | 14 |
| BsiSI | CCGG | 1 cut(s) | 815 |
| BslFI | GGGAC | 4 cut(s) | 128, 130, 239, 571 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 440, 570, 571 |
| BsmAI | GTCTC | 2 cut(s) | 29, 867 |
| BsmBI | CGTCTC | 1 cut(s) | 867 |
| BsmFI | GGGAC | 4 cut(s) | 128, 130, 239, 571 |
| BsmI | GAATGC | 1 cut(s) | 1285 |
| BsnI | GGCC | 1 cut(s) | 45 |
| Bso31I | GGTCTC | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp143I | GATC | 7 cut(s) | 125, 205, 529, 547, 558, 1450, 1455 |
| BspACI | CCGC | 9 cut(s) | 138, 238, 328, 565, 643, 754, 919, 958, 1494 |
| BspANI | GGCC | 1 cut(s) | 45 |
| BspCNI | CTCAG | 2 cut(s) | 74, 457 |
| BspFNI | CGCG | 2 cut(s) | 21, 384 |
| BspHI | TCATGA | 1 cut(s) | 934 |
| BspLI | GGNNCC | 3 cut(s) | 207, 531, 587 |
| BspMAI | CTGCAG | 1 cut(s) | 899 |
| BspMI | ACCTGC | 2 cut(s) | 414, 1426 |
| BspPI | GGATC | 5 cut(s) | 200, 213, 524, 537, 1458 |
| BspQI | GCTCTTC | 2 cut(s) | 2, 1354 |
| BspTNI | GGTCTC | 1 cut(s) | 29 |
| BsrBI | CCGCTC | 2 cut(s) | 919, 1494 |
| BsrDI | GCAATG | 1 cut(s) | 1188 |
| BsrFI | RCCGGY | 1 cut(s) | 814 |
| BsrI | ACTGG | 2 cut(s) | 494, 1155 |
| BssAI | RCCGGY | 1 cut(s) | 814 |
| BssECI | CCNNGG | 3 cut(s) | 410, 1251, 1349 |
| BssHII | GCGCGC | 1 cut(s) | 382 |
| BssMI | GATC | 7 cut(s) | 125, 205, 529, 547, 558, 1450, 1455 |
| Bst4CI | ACNGT | 1 cut(s) | 1511 |
| BstBAI | YACGTR | 1 cut(s) | 105 |
| BstC8I | GCNNGC | 1 cut(s) | 384 |
| BstDEI | CTNAG | 5 cut(s) | 40, 61, 465, 551, 1115 |
| BstDSI | CCRYGG | 2 cut(s) | 410, 1251 |
| BstF5I | GGATG | 3 cut(s) | 128, 1165, 1616 |
| BstFNI | CGCG | 2 cut(s) | 21, 384 |
| BstHHI | GCGC | 3 cut(s) | 21, 384, 386 |
| BstKTI | GATC | 7 cut(s) | 128, 208, 532, 550, 561, 1453, 1458 |
| BstMAI | GTCTC | 2 cut(s) | 29, 867 |
| BstMBI | GATC | 7 cut(s) | 125, 205, 529, 547, 558, 1450, 1455 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 18, 318, 327, 1187, 1309, 1427 |
| BstNSI | RCATGY | 1 cut(s) | 1657 |
| BstSFI | CTRYAG | 1 cut(s) | 895 |
| BstUI | CGCG | 2 cut(s) | 21, 384 |
| BstV1I | GCAGC | 2 cut(s) | 67, 342 |
| BstV2I | GAAGAC | 1 cut(s) | 295 |
| BstX2I | RGATCY | 3 cut(s) | 205, 529, 558 |
| BstYI | RGATCY | 3 cut(s) | 205, 529, 558 |
| Bsu36I | CCTNAGG | 2 cut(s) | 40, 465 |
| BsuRI | GGCC | 1 cut(s) | 45 |
| BtgI | CCRYGG | 2 cut(s) | 410, 1251 |
| BtsCI | GGATG | 3 cut(s) | 128, 1165, 1616 |
| BtsI | GCAGTG | 1 cut(s) | 159 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| BveI | ACCTGC | 2 cut(s) | 414, 1426 |
| Cac8I | GCNNGC | 1 cut(s) | 384 |
| CciI | TCATGA | 1 cut(s) | 934 |
| CfoI | GCGC | 3 cut(s) | 21, 384, 386 |
| Cfr10I | RCCGGY | 1 cut(s) | 814 |
| Cfr13I | GGNCC | 2 cut(s) | 178, 585 |
| CseI | GACGC | 1 cut(s) | 10 |
| Csp6I | GTAC | 4 cut(s) | 106, 284, 1148, 1614 |
| CspAI | ACCGGT | 1 cut(s) | 814 |
| CviAII | CATG | 8 cut(s) | 439, 598, 685, 935, 961, 1304, 1610, 1654 |
| CviQI | GTAC | 4 cut(s) | 106, 284, 1148, 1614 |
| DdeI | CTNAG | 5 cut(s) | 40, 61, 465, 551, 1115 |
| DpnI | GATC | 7 cut(s) | 127, 207, 531, 549, 560, 1452, 1457 |
| DpnII | GATC | 7 cut(s) | 125, 205, 529, 547, 558, 1450, 1455 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 299, 680 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 299, 680 |
| Eco147I | AGGCCT | 1 cut(s) | 45 |
| Eco31I | GGTCTC | 1 cut(s) | 29 |
| Eco47I | GGWCC | 2 cut(s) | 178, 585 |
| Eco57I | CTGAAG | 1 cut(s) | 279 |
| Eco81I | CCTNAGG | 2 cut(s) | 40, 465 |
| EcoRI | GAATTC | 1 cut(s) | 415 |
| Esp3I | CGTCTC | 1 cut(s) | 867 |
| FaeI | CATG | 8 cut(s) | 442, 601, 688, 938, 964, 1307, 1613, 1657 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1212, 1244 |
| FaqI | GGGAC | 4 cut(s) | 128, 130, 239, 571 |
| FatI | CATG | 8 cut(s) | 438, 597, 684, 934, 960, 1303, 1609, 1653 |
| FauI | CCCGC | 1 cut(s) | 572 |
| FauNDI | CATATG | 1 cut(s) | 535 |
| FblI | GTMKAC | 1 cut(s) | 345 |
| Fnu4HI | GCNGC | 6 cut(s) | 81, 139, 328, 331, 920, 1495 |
| FokI | GGATG | 3 cut(s) | 115, 1172, 1603 |
| Fsp4HI | GCNGC | 6 cut(s) | 81, 139, 328, 331, 920, 1495 |
| GlaI | GCGC | 3 cut(s) | 20, 383, 385 |
| GluI | GCNGC | 6 cut(s) | 81, 139, 328, 331, 920, 1495 |
| GsaI | CCCAGC | 1 cut(s) | 526 |
| GsuI | CTGGAG | 4 cut(s) | 301, 307, 417, 1172 |
| HaeIII | GGCC | 1 cut(s) | 45 |
| HapII | CCGG | 1 cut(s) | 815 |
| HgaI | GACGC | 1 cut(s) | 10 |
| HhaI | GCGC | 3 cut(s) | 21, 384, 386 |
| Hin1II | CATG | 8 cut(s) | 442, 601, 688, 938, 964, 1307, 1613, 1657 |
| Hin6I | GCGC | 3 cut(s) | 19, 382, 384 |
| HinP1I | GCGC | 3 cut(s) | 19, 382, 384 |
| HindIII | AAGCTT | 1 cut(s) | 1112 |
| HinfI | GANTC | 2 cut(s) | 1232, 1409 |
| HpaII | CCGG | 1 cut(s) | 815 |
| HphI | GGTGA | 6 cut(s) | 16, 586, 787, 1139, 1229, 1285 |
| Hpy166II | GTNNAC | 3 cut(s) | 346, 424, 807 |
| Hpy188I | TCNGA | 8 cut(s) | 64, 352, 558, 1009, 1104, 1455, 1650, 1665 |
| Hpy188III | TCNNGA | 8 cut(s) | 434, 449, 464, 935, 1175, 1229, 1268, 1459 |
| Hpy8I | GTNNAC | 3 cut(s) | 346, 424, 807 |
| HpyCH4III | ACNGT | 1 cut(s) | 1511 |
| HpyCH4IV | ACGT | 2 cut(s) | 104, 1387 |
| HpyCH4V | TGCA | 4 cut(s) | 688, 897, 968, 1430 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 18, 318, 327, 1187, 1309, 1427 |
| HpyF3I | CTNAG | 5 cut(s) | 40, 61, 465, 551, 1115 |
| HpySE526I | ACGT | 2 cut(s) | 104, 1387 |
| Hsp92II | CATG | 8 cut(s) | 442, 601, 688, 938, 964, 1307, 1613, 1657 |
| HspAI | GCGC | 3 cut(s) | 19, 382, 384 |
| Kzo9I | GATC | 7 cut(s) | 125, 205, 529, 547, 558, 1450, 1455 |
| LguI | GCTCTTC | 2 cut(s) | 2, 1354 |
| LmnI | GCTCC | 5 cut(s) | 326, 796, 853, 1300, 1491 |
| Lsp1109I | GCAGC | 2 cut(s) | 67, 342 |
| LweI | GCATC | 1 cut(s) | 961 |
| MaeII | ACGT | 2 cut(s) | 104, 1387 |
| MaeIII | GTNAC | 3 cut(s) | 839, 1505, 1656 |
| MalI | GATC | 7 cut(s) | 127, 207, 531, 549, 560, 1452, 1457 |
| MbiI | CCGCTC | 2 cut(s) | 919, 1494 |
| MboI | GATC | 7 cut(s) | 125, 205, 529, 547, 558, 1450, 1455 |
| MflI | RGATCY | 3 cut(s) | 205, 529, 558 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| MluCI | AATT | 5 cut(s) | 55, 167, 415, 476, 1599 |
| MmeI | TCCRAC | 3 cut(s) | 205, 966, 1033 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1224 |
| MseI | TTAA | 3 cut(s) | 974, 1092, 1602 |
| MslI | CAYNNNNRTG | 3 cut(s) | 133, 596, 689 |
| MspI | CCGG | 1 cut(s) | 815 |
| Mva1269I | GAATGC | 1 cut(s) | 1285 |
| MvnI | CGCG | 2 cut(s) | 21, 384 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 18, 318, 327, 1187, 1309, 1427 |
| NdeI | CATATG | 1 cut(s) | 535 |
| NdeII | GATC | 7 cut(s) | 125, 205, 529, 547, 558, 1450, 1455 |
| NlaIII | CATG | 8 cut(s) | 442, 601, 688, 938, 964, 1307, 1613, 1657 |
| NlaIV | GGNNCC | 3 cut(s) | 207, 531, 587 |
| NspI | RCATGY | 1 cut(s) | 1657 |
| PagI | TCATGA | 1 cut(s) | 934 |
| PauI | GCGCGC | 1 cut(s) | 382 |
| PceI | AGGCCT | 1 cut(s) | 45 |
| PciI | ACATGT | 1 cut(s) | 1653 |
| PciSI | GCTCTTC | 2 cut(s) | 2, 1354 |
| PctI | GAATGC | 1 cut(s) | 1285 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1224 |
| PfeI | GAWTC | 2 cut(s) | 1232, 1409 |
| PinAI | ACCGGT | 1 cut(s) | 814 |
| PkrI | GCNGC | 6 cut(s) | 82, 140, 329, 332, 921, 1496 |
| Ppu21I | YACGTR | 1 cut(s) | 105 |
| PscI | ACATGT | 1 cut(s) | 1653 |
| PshBI | ATTAAT | 1 cut(s) | 1602 |
| PspFI | CCCAGC | 1 cut(s) | 522 |
| PspN4I | GGNNCC | 3 cut(s) | 207, 531, 587 |
| PspPI | GGNCC | 2 cut(s) | 178, 585 |
| PstI | CTGCAG | 1 cut(s) | 899 |
| PsuI | RGATCY | 3 cut(s) | 205, 529, 558 |
| PteI | GCGCGC | 1 cut(s) | 382 |
| RsaI | GTAC | 4 cut(s) | 107, 285, 1149, 1615 |
| RsaNI | GTAC | 4 cut(s) | 106, 284, 1148, 1614 |
| RseI | CAYNNNNRTG | 3 cut(s) | 133, 596, 689 |
| SapI | GCTCTTC | 2 cut(s) | 2, 1354 |
| SaqAI | TTAA | 3 cut(s) | 974, 1092, 1602 |
| SatI | GCNGC | 6 cut(s) | 81, 139, 328, 331, 920, 1495 |
| Sau3AI | GATC | 7 cut(s) | 125, 205, 529, 547, 558, 1450, 1455 |
| Sau96I | GGNCC | 2 cut(s) | 178, 585 |
| ScaI | AGTACT | 1 cut(s) | 1149 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SfaNI | GCATC | 1 cut(s) | 961 |
| SfcI | CTRYAG | 1 cut(s) | 895 |
| SinI | GGWCC | 2 cut(s) | 178, 585 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 133, 596, 689 |
| Sse9I | AATT | 5 cut(s) | 55, 167, 415, 476, 1599 |
| SseBI | AGGCCT | 1 cut(s) | 45 |
| SsiI | CCGC | 9 cut(s) | 138, 238, 328, 565, 643, 754, 919, 958, 1494 |
| SspI | AATATT | 1 cut(s) | 1239 |
| StuI | AGGCCT | 1 cut(s) | 45 |
| TaaI | ACNGT | 1 cut(s) | 1511 |
| TaiI | ACGT | 2 cut(s) | 107, 1390 |
| TaqI | TCGA | 4 cut(s) | 48, 279, 450, 672 |
| TasI | AATT | 5 cut(s) | 55, 167, 415, 476, 1599 |
| TatI | WGTACW | 1 cut(s) | 1147 |
| TauI | GCSGC | 4 cut(s) | 141, 330, 922, 1497 |
| TfiI | GAWTC | 2 cut(s) | 1232, 1409 |
| Tru1I | TTAA | 3 cut(s) | 974, 1092, 1602 |
| Tru9I | TTAA | 3 cut(s) | 974, 1092, 1602 |
| TscAI | CASTG | 1 cut(s) | 166 |
| TseI | GCWGC | 2 cut(s) | 80, 330 |
| TspDTI | ATGAA | 6 cut(s) | 614, 1347, 1418, 1481, 1620, 1660 |
| TspRI | CASTG | 1 cut(s) | 166 |
| VpaK11BI | GGWCC | 2 cut(s) | 178, 585 |
| VspI | ATTAAT | 1 cut(s) | 1602 |
| XapI | RAATTY | 2 cut(s) | 167, 415 |
| XceI | RCATGY | 1 cut(s) | 1657 |
| XmiI | GTMKAC | 1 cut(s) | 345 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1224 |
| ZrmI | AGTACT | 1 cut(s) | 1149 |