Rroxscaffold_3G00255630

dnaJ homolog subfamily C member

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
49917540 .. 49919216
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255630.1

Sequence Viewer

Length: 1677 bp
ATGGTGAAGAGCACAGAGCGCGTCTGCCACTACGAGACCTTAGGCCTCGAACCAAATTGCTCAGAAAAAGAAATCAAGGCTGCTCACAGGAAACTAATCCTCACGTACCATTGGGACAAATGTAGATCATCCCAATGCGGCTTGTCCCAAGAAGAAGCCACTGCCAAATTTTTAGAGGTCCAACAAGCCTACGAAATCCTTATGGATCCCATAAAGCGAGAAACCTATAACGCCTACCGCCAGACCTACGCCGTCCCTGAAGTTTTCAACCCCGACCTCGAAGTACCCTTTGACAACATCGTCTTCAACGGCTACTCCAGCTCCAGCCGCAGCTTCTACAATGTCTACTCTGACATTTTTCAAAGGATTTACGCCAACGAGCGCGCTTTTCAAAAGAAGAACGACCTGCCGTGGAATTCGGTTCACAAGCCTCCAGACATGGGCAATCTCGACACCCCTTATCCTGAGGTTGTTCAATTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCATATGATGAGTATGATCTAAGTCAGATCTCCCGCAAAGGGGTGAAGGAATGGTCCCACATAAACATGAAGGCGAGGAAGAAAGCAAAGAAGGAATACAACAATAAGGTGCGGTGTTTGACACAAACTGCGAAAAGGCTCGACAGGAGGGTCATGCAGATGGTAGCGAAGAGGGAGGAGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGGAGGAAGCGGTTGAAGAAAGAGAAGTTGGTGAAGGCTATGGAGTATGAGGAGCAGGAGTGGACGAAACCGGTTGAGAGGAAGAGAAAATATAGTAACAAGGAGGAGGAGCAGGAGGAAAAAGAGAGAGACGAATGGGAGTGTGTAGTCTGCAGGAAGGTGTTTAGGAGTGAGCGGCAGAGCAGAAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAGAGTTAATGGAGTTGTTGGAGGTTTTGGAGGAAAAATCAGAGGAAGAAGAGGTTTTGGAGGAAGGAAAGAGGAATGTGGTGGTTGGAGGGAGTGATAGCGAAGAGGAGTTTGTTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTACTGGAGGAGGATGAGATGGGTGTTCTTGAAGCAATGGTGGCGAGGCGAAAGACGATGGAAGAGGTTGGTGAAGATATTCTTGAATCAATATTGGTTGAACCCGTGGCGAGTAGTAGTCAAGAGGTGAAGAATGCTGACGAGGTGGCTATGGAGCATGACAAGCTAAAGAACACCAATAAGAATGAAGGAGAAAGGAAACCGAGGAGAAGAAGAGCCAAGAGTAATAGAACTGACGAACGTGATGGTTCAAATATGAAGGAATCCAAACCTGCTTGTAGTGCAGAAAAAGGATATGATGAGGATCAGATCAAGAAAATGAAGGGTGGAGGGAGGAAAGAGAGGAGCGGCAAGAAGAGTAACGGTAAAGGAGATATTGAGCAGAAGAAAATGAGGAGTGGGGGAAGGAGTGAAGAGAAGAAGGGTAAGAAGAGAAATGGTGGAGAAAGAAGAATTAATGAACATGGTACATCCTATTTTTCTGCTGTGAATGAGAGTTATCTGAACATGTTACATCTGATATTCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

558

Amino Acids

65.81

Weight (kDa)

6.04

Isoelectric Point (pI)

63.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 10 - 77 4.3e-17 DnaJ domain
ZUO1-like_ZHD PF21884 119 - 228 8.1e-16 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 294 - 318 6.8e-07 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 299, 680
Acc36I ACCTGC 2 cut(s) 414, 1426
AccBSI CCGCTC 2 cut(s) 919, 1494
AccI GTMKAC 1 cut(s) 345
AccII CGCG 2 cut(s) 21, 384
AciI CCGC 9 cut(s) 138, 238, 328, 565, 643, 754, 919, 958, 1494
AclWI GGATC 5 cut(s) 200, 213, 524, 537, 1458
AcsI RAATTY 2 cut(s) 167, 415
AcuI CTGAAG 1 cut(s) 279
AfaI GTAC 4 cut(s) 107, 285, 1149, 1615
AfiI CCNNNNNNNGG 3 cut(s) 440, 570, 571
AflIII ACRYGT 1 cut(s) 1653
AgeI ACCGGT 1 cut(s) 814
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 4 cut(s) 321, 333, 1114, 1312
AluI AGCT 4 cut(s) 321, 333, 1114, 1312
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 2 cut(s) 29, 867
AlwI GGATC 5 cut(s) 200, 213, 524, 537, 1458
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 80, 330
ApoI RAATTY 2 cut(s) 167, 415
AseI ATTAAT 1 cut(s) 1602
AsiGI ACCGGT 1 cut(s) 814
Asp700I GAANNNNTTC 1 cut(s) 1224
AspLEI GCGC 3 cut(s) 21, 384, 386
AspS9I GGNCC 2 cut(s) 178, 585
AsuHPI GGTGA 6 cut(s) 16, 586, 787, 1139, 1229, 1285
AvaII GGWCC 2 cut(s) 178, 585
AxyI CCTNAGG 2 cut(s) 40, 465
BamHI GGATCC 2 cut(s) 205, 529
BbsI GAAGAC 1 cut(s) 295
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 2 cut(s) 67, 342
BccI CCATC 5 cut(s) 685, 1079, 1159, 1198, 1385
BceAI ACGGC 3 cut(s) 236, 325, 394
BcoDI GTCTC 2 cut(s) 29, 867
BfmI CTRYAG 1 cut(s) 895
BfuAI ACCTGC 2 cut(s) 414, 1426
BglII AGATCT 1 cut(s) 558
BisI GCNGC 6 cut(s) 81, 139, 328, 331, 920, 1495
BlsI GCNGC 6 cut(s) 82, 140, 329, 332, 921, 1496
BmcAI AGTACT 1 cut(s) 1149
Bme18I GGWCC 2 cut(s) 178, 585
BmgT120I GGNCC 2 cut(s) 178, 585
BmiI GGNNCC 3 cut(s) 207, 531, 587
BmsI GCATC 1 cut(s) 961
BpiI GAAGAC 1 cut(s) 295
BpmI CTGGAG 4 cut(s) 301, 307, 417, 1172
BsaAI YACGTR 1 cut(s) 105
BsaBI GATNNNNATC 1 cut(s) 1449
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 410, 1251, 1349
BsaWI WCCGGW 1 cut(s) 814
BsaXI ACNNNNNCTCC 6 cut(s) 299, 305, 329, 335, 788, 818
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 570, 571
Bse118I RCCGGY 1 cut(s) 814
Bse1I ACTGG 2 cut(s) 494, 1155
Bse21I CCTNAGG 2 cut(s) 40, 465
Bse3DI GCAATG 1 cut(s) 1188
Bse8I GATNNNNATC 1 cut(s) 1449
BseDI CCNNGG 3 cut(s) 410, 1251, 1349
BseGI GGATG 3 cut(s) 128, 1165, 1616
BseJI GATNNNNATC 1 cut(s) 1449
BseLI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BseMI GCAATG 1 cut(s) 1188
BseMII CTCAG 2 cut(s) 75, 456
BseNI ACTGG 2 cut(s) 494, 1155
BsePI GCGCGC 1 cut(s) 382
BseXI GCAGC 2 cut(s) 67, 342
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 1 cut(s) 1449
Bsh1236I CGCG 2 cut(s) 21, 384
BshFI GGCC 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 4 cut(s) 128, 130, 239, 571
BslI CCNNNNNNNGG 3 cut(s) 440, 570, 571
BsmAI GTCTC 2 cut(s) 29, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 4 cut(s) 128, 130, 239, 571
BsmI GAATGC 1 cut(s) 1285
BsnI GGCC 1 cut(s) 45
Bso31I GGTCTC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 14
Bsp143I GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
BspACI CCGC 9 cut(s) 138, 238, 328, 565, 643, 754, 919, 958, 1494
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 74, 457
BspFNI CGCG 2 cut(s) 21, 384
BspHI TCATGA 1 cut(s) 934
BspLI GGNNCC 3 cut(s) 207, 531, 587
BspMAI CTGCAG 1 cut(s) 899
BspMI ACCTGC 2 cut(s) 414, 1426
BspPI GGATC 5 cut(s) 200, 213, 524, 537, 1458
BspQI GCTCTTC 2 cut(s) 2, 1354
BspTNI GGTCTC 1 cut(s) 29
BsrBI CCGCTC 2 cut(s) 919, 1494
BsrDI GCAATG 1 cut(s) 1188
BsrFI RCCGGY 1 cut(s) 814
BsrI ACTGG 2 cut(s) 494, 1155
BssAI RCCGGY 1 cut(s) 814
BssECI CCNNGG 3 cut(s) 410, 1251, 1349
BssHII GCGCGC 1 cut(s) 382
BssMI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
Bst4CI ACNGT 1 cut(s) 1511
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 5 cut(s) 40, 61, 465, 551, 1115
BstDSI CCRYGG 2 cut(s) 410, 1251
BstF5I GGATG 3 cut(s) 128, 1165, 1616
BstFNI CGCG 2 cut(s) 21, 384
BstHHI GCGC 3 cut(s) 21, 384, 386
BstKTI GATC 7 cut(s) 128, 208, 532, 550, 561, 1453, 1458
BstMAI GTCTC 2 cut(s) 29, 867
BstMBI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
BstMWI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 1187, 1309, 1427
BstNSI RCATGY 1 cut(s) 1657
BstSFI CTRYAG 1 cut(s) 895
BstUI CGCG 2 cut(s) 21, 384
BstV1I GCAGC 2 cut(s) 67, 342
BstV2I GAAGAC 1 cut(s) 295
BstX2I RGATCY 3 cut(s) 205, 529, 558
BstYI RGATCY 3 cut(s) 205, 529, 558
Bsu36I CCTNAGG 2 cut(s) 40, 465
BsuRI GGCC 1 cut(s) 45
BtgI CCRYGG 2 cut(s) 410, 1251
BtsCI GGATG 3 cut(s) 128, 1165, 1616
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
BveI ACCTGC 2 cut(s) 414, 1426
Cac8I GCNNGC 1 cut(s) 384
CciI TCATGA 1 cut(s) 934
CfoI GCGC 3 cut(s) 21, 384, 386
Cfr10I RCCGGY 1 cut(s) 814
Cfr13I GGNCC 2 cut(s) 178, 585
CseI GACGC 1 cut(s) 10
Csp6I GTAC 4 cut(s) 106, 284, 1148, 1614
CspAI ACCGGT 1 cut(s) 814
CviAII CATG 8 cut(s) 439, 598, 685, 935, 961, 1304, 1610, 1654
CviQI GTAC 4 cut(s) 106, 284, 1148, 1614
DdeI CTNAG 5 cut(s) 40, 61, 465, 551, 1115
DpnI GATC 7 cut(s) 127, 207, 531, 549, 560, 1452, 1457
DpnII GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
DrdI GACNNNNNNGTC 2 cut(s) 299, 680
DseDI GACNNNNNNGTC 2 cut(s) 299, 680
Eco147I AGGCCT 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 178, 585
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 2 cut(s) 40, 465
EcoRI GAATTC 1 cut(s) 415
Esp3I CGTCTC 1 cut(s) 867
FaeI CATG 8 cut(s) 442, 601, 688, 938, 964, 1307, 1613, 1657
FalI AAGNNNNNCTT 2 cut(s) 1212, 1244
FaqI GGGAC 4 cut(s) 128, 130, 239, 571
FatI CATG 8 cut(s) 438, 597, 684, 934, 960, 1303, 1609, 1653
FauI CCCGC 1 cut(s) 572
FauNDI CATATG 1 cut(s) 535
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 6 cut(s) 81, 139, 328, 331, 920, 1495
FokI GGATG 3 cut(s) 115, 1172, 1603
Fsp4HI GCNGC 6 cut(s) 81, 139, 328, 331, 920, 1495
GlaI GCGC 3 cut(s) 20, 383, 385
GluI GCNGC 6 cut(s) 81, 139, 328, 331, 920, 1495
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 4 cut(s) 301, 307, 417, 1172
HaeIII GGCC 1 cut(s) 45
HapII CCGG 1 cut(s) 815
HgaI GACGC 1 cut(s) 10
HhaI GCGC 3 cut(s) 21, 384, 386
Hin1II CATG 8 cut(s) 442, 601, 688, 938, 964, 1307, 1613, 1657
Hin6I GCGC 3 cut(s) 19, 382, 384
HinP1I GCGC 3 cut(s) 19, 382, 384
HindIII AAGCTT 1 cut(s) 1112
HinfI GANTC 2 cut(s) 1232, 1409
HpaII CCGG 1 cut(s) 815
HphI GGTGA 6 cut(s) 16, 586, 787, 1139, 1229, 1285
Hpy166II GTNNAC 3 cut(s) 346, 424, 807
Hpy188I TCNGA 8 cut(s) 64, 352, 558, 1009, 1104, 1455, 1650, 1665
Hpy188III TCNNGA 8 cut(s) 434, 449, 464, 935, 1175, 1229, 1268, 1459
Hpy8I GTNNAC 3 cut(s) 346, 424, 807
HpyCH4III ACNGT 1 cut(s) 1511
HpyCH4IV ACGT 2 cut(s) 104, 1387
HpyCH4V TGCA 4 cut(s) 688, 897, 968, 1430
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 1187, 1309, 1427
HpyF3I CTNAG 5 cut(s) 40, 61, 465, 551, 1115
HpySE526I ACGT 2 cut(s) 104, 1387
Hsp92II CATG 8 cut(s) 442, 601, 688, 938, 964, 1307, 1613, 1657
HspAI GCGC 3 cut(s) 19, 382, 384
Kzo9I GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
LguI GCTCTTC 2 cut(s) 2, 1354
LmnI GCTCC 5 cut(s) 326, 796, 853, 1300, 1491
Lsp1109I GCAGC 2 cut(s) 67, 342
LweI GCATC 1 cut(s) 961
MaeII ACGT 2 cut(s) 104, 1387
MaeIII GTNAC 3 cut(s) 839, 1505, 1656
MalI GATC 7 cut(s) 127, 207, 531, 549, 560, 1452, 1457
MbiI CCGCTC 2 cut(s) 919, 1494
MboI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
MflI RGATCY 3 cut(s) 205, 529, 558
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 5 cut(s) 55, 167, 415, 476, 1599
MmeI TCCRAC 3 cut(s) 205, 966, 1033
MroXI GAANNNNTTC 1 cut(s) 1224
MseI TTAA 3 cut(s) 974, 1092, 1602
MslI CAYNNNNRTG 3 cut(s) 133, 596, 689
MspI CCGG 1 cut(s) 815
Mva1269I GAATGC 1 cut(s) 1285
MvnI CGCG 2 cut(s) 21, 384
MwoI GCNNNNNNNGC 6 cut(s) 18, 318, 327, 1187, 1309, 1427
NdeI CATATG 1 cut(s) 535
NdeII GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
NlaIII CATG 8 cut(s) 442, 601, 688, 938, 964, 1307, 1613, 1657
NlaIV GGNNCC 3 cut(s) 207, 531, 587
NspI RCATGY 1 cut(s) 1657
PagI TCATGA 1 cut(s) 934
PauI GCGCGC 1 cut(s) 382
PceI AGGCCT 1 cut(s) 45
PciI ACATGT 1 cut(s) 1653
PciSI GCTCTTC 2 cut(s) 2, 1354
PctI GAATGC 1 cut(s) 1285
PdmI GAANNNNTTC 1 cut(s) 1224
PfeI GAWTC 2 cut(s) 1232, 1409
PinAI ACCGGT 1 cut(s) 814
PkrI GCNGC 6 cut(s) 82, 140, 329, 332, 921, 1496
Ppu21I YACGTR 1 cut(s) 105
PscI ACATGT 1 cut(s) 1653
PshBI ATTAAT 1 cut(s) 1602
PspFI CCCAGC 1 cut(s) 522
PspN4I GGNNCC 3 cut(s) 207, 531, 587
PspPI GGNCC 2 cut(s) 178, 585
PstI CTGCAG 1 cut(s) 899
PsuI RGATCY 3 cut(s) 205, 529, 558
PteI GCGCGC 1 cut(s) 382
RsaI GTAC 4 cut(s) 107, 285, 1149, 1615
RsaNI GTAC 4 cut(s) 106, 284, 1148, 1614
RseI CAYNNNNRTG 3 cut(s) 133, 596, 689
SapI GCTCTTC 2 cut(s) 2, 1354
SaqAI TTAA 3 cut(s) 974, 1092, 1602
SatI GCNGC 6 cut(s) 81, 139, 328, 331, 920, 1495
Sau3AI GATC 7 cut(s) 125, 205, 529, 547, 558, 1450, 1455
Sau96I GGNCC 2 cut(s) 178, 585
ScaI AGTACT 1 cut(s) 1149
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 1 cut(s) 961
SfcI CTRYAG 1 cut(s) 895
SinI GGWCC 2 cut(s) 178, 585
SmiMI CAYNNNNRTG 3 cut(s) 133, 596, 689
Sse9I AATT 5 cut(s) 55, 167, 415, 476, 1599
SseBI AGGCCT 1 cut(s) 45
SsiI CCGC 9 cut(s) 138, 238, 328, 565, 643, 754, 919, 958, 1494
SspI AATATT 1 cut(s) 1239
StuI AGGCCT 1 cut(s) 45
TaaI ACNGT 1 cut(s) 1511
TaiI ACGT 2 cut(s) 107, 1390
TaqI TCGA 4 cut(s) 48, 279, 450, 672
TasI AATT 5 cut(s) 55, 167, 415, 476, 1599
TatI WGTACW 1 cut(s) 1147
TauI GCSGC 4 cut(s) 141, 330, 922, 1497
TfiI GAWTC 2 cut(s) 1232, 1409
Tru1I TTAA 3 cut(s) 974, 1092, 1602
Tru9I TTAA 3 cut(s) 974, 1092, 1602
TscAI CASTG 1 cut(s) 166
TseI GCWGC 2 cut(s) 80, 330
TspDTI ATGAA 6 cut(s) 614, 1347, 1418, 1481, 1620, 1660
TspRI CASTG 1 cut(s) 166
VpaK11BI GGWCC 2 cut(s) 178, 585
VspI ATTAAT 1 cut(s) 1602
XapI RAATTY 2 cut(s) 167, 415
XceI RCATGY 1 cut(s) 1657
XmiI GTMKAC 1 cut(s) 345
XmnI GAANNNNTTC 1 cut(s) 1224
ZrmI AGTACT 1 cut(s) 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.