Rroxscaffold_3G00255800

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002151
Physical Location & Seq
Forward (+)
50201123 .. 50202399
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00255800.1

Sequence Viewer

Length: 930 bp
ATGGATCCCACAAAGCGAGAAACCTACGACGCCTACCGCCAGACCTACGCTGTCCCTGAAGTTTTCAACCCCGACCTCGAAGTCCCCTTTGACAACATCGTCTTCAACGGCTACTCCAGCTCCGGCCGCAGCTTCTACAAGGTCTACTCTGACATTTTTCAACGGATTTACGCCAACGACCGCGCTTTTCAAAAGAAGAACGATCTGCCGTGGAATTCGGTTCACAAGCCTCCAGACATGGGCAATCTCGACACCCCTTATCCTGAGGTTTCTAAATTTTACAACTACTGGCTCAACTTTAGTTCCATAATGGATTTCTGCTGGGAGGATCCACATGATGAGTATGATCTAAGTCAGATCTCCCGCAGAGGGGTGAAGTTTTGGTCCCGCATAAACATGAAGGCAAGGAAGAAAGCAAAGAAGGAATACAACAATAAGCAGTATGTCCTTCCTCAAGAAACTGCGAAAAGGATCGACAGGAGGGTCATGCAGATGGTAGCAAAGAGGGAGGAGGAGAGAAAGAGGGAGATAGAGGAGGAGAGGGAGAGAAGGAAGCGGTTGAAGAAAGAGAAGTTGGTGAAGGCTATGGAGAGTGAGCGGCAGTACAGGAATCATGAGCAATCAAAAAAGCATCTCCGCATGGTTGCAAAGTTAATGGAGTTGTTGGAGGTTTTGGAGGAAAAACCAGAAGAAGAAGAGGTTTTGGAGGAAGCAAAAAGGAATGAGGTGGTTGGAGGGAGTGATAGCGAAGAGGAGTTTGCTGATGGTGTTAATGATAATCAGAGGGAAAAGCTTAGTGAAACAGGTGAAGTTGATGATGAGGAAGTGGAGGAGGATGAGATGGGTGTTCTTGGAGCAATGGTGGTGAGGCAAAAGACGATGGAAAAGGTTGGTGAAGATATTCTTGAATCAACAGTAGTCAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

309

Amino Acids

36.87

Weight (kDa)

5.3

Isoelectric Point (pI)

62.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZUO1-like_ZHD PF21884 45 - 162 3.4e-13 Zuotin-like, zuotin homology domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 80, 98, 482
AccBSI CCGCTC 1 cut(s) 598
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 183
AciI CCGC 8 cut(s) 37, 127, 181, 364, 388, 556, 598, 637
AclWI GGATC 4 cut(s) 12, 323, 336, 479
AcoI YGGCCR 1 cut(s) 124
AcsI RAATTY 2 cut(s) 214, 275
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 3 cut(s) 239, 369, 370
AgsI TTSAA 6 cut(s) 67, 106, 161, 191, 562, 908
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 3 cut(s) 120, 132, 793
AluI AGCT 3 cut(s) 120, 132, 793
AlwI GGATC 4 cut(s) 12, 323, 336, 479
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 129
ApoI RAATTY 2 cut(s) 214, 275
Asp700I GAANNNNTTC 1 cut(s) 900
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 384
AsuHPI GGTGA 5 cut(s) 385, 589, 818, 877, 905
AvaII GGWCC 1 cut(s) 384
AxyI CCTNAGG 1 cut(s) 264
BamHI GGATCC 2 cut(s) 4, 328
BbsI GAAGAC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 141
BccI CCATC 4 cut(s) 487, 758, 835, 874
BceAI ACGGC 2 cut(s) 124, 193
BglII AGATCT 1 cut(s) 357
BisI GCNGC 3 cut(s) 127, 130, 599
BlsI GCNGC 3 cut(s) 128, 131, 600
Bme18I GGWCC 1 cut(s) 384
BmgT120I GGNCC 1 cut(s) 384
BmiI GGNNCC 3 cut(s) 6, 330, 386
BmsI GCATC 1 cut(s) 640
BpiI GAAGAC 1 cut(s) 94
BpmI CTGGAG 2 cut(s) 100, 216
BpuEI CTTGAG 1 cut(s) 438
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 209
BsaXI ACNNNNNCTCC 6 cut(s) 98, 104, 128, 134, 846, 876
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 369, 370
Bse1I ACTGG 1 cut(s) 293
Bse21I CCTNAGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 864
BseDI CCNNGG 1 cut(s) 209
BseGI GGATG 1 cut(s) 841
BseLI CCNNNNNNNGG 3 cut(s) 239, 369, 370
BseMI GCAATG 1 cut(s) 864
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 6 cut(s) 524, 527, 548, 551, 767, 845
BseX3I CGGCCG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 141
BseYI CCCAGC 1 cut(s) 321
Bsh1236I CGCG 1 cut(s) 183
Bsh1285I CGRYCG 2 cut(s) 127, 181
BshFI GGCC 1 cut(s) 126
BsiEI CGRYCG 2 cut(s) 127, 181
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 3 cut(s) 38, 68, 370
BslI CCNNNNNNNGG 3 cut(s) 239, 369, 370
BsmFI GGGAC 3 cut(s) 38, 68, 370
BsnI GGCC 1 cut(s) 126
Bsp143I GATC 6 cut(s) 4, 202, 328, 346, 357, 471
BspACI CCGC 8 cut(s) 37, 127, 181, 364, 388, 556, 598, 637
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 183
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 6, 330, 386
BspPI GGATC 4 cut(s) 12, 323, 336, 479
BsrBI CCGCTC 1 cut(s) 598
BsrDI GCAATG 1 cut(s) 864
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 209
BssMI GATC 6 cut(s) 4, 202, 328, 346, 357, 471
BssNI GRCGYC 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 916
Bst6I CTCTTC 2 cut(s) 690, 744
BstACI GRCGYC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 264, 350, 794
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 841
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 6 cut(s) 7, 205, 331, 349, 360, 474
BstMBI GATC 6 cut(s) 4, 202, 328, 346, 357, 471
BstMCI CGRYCG 2 cut(s) 127, 181
BstMWI GCNNNNNNNGC 2 cut(s) 117, 126
BstUI CGCG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 141
BstV2I GAAGAC 1 cut(s) 94
BstX2I RGATCY 3 cut(s) 4, 328, 357
BstYI RGATCY 3 cut(s) 4, 328, 357
BstZI CGGCCG 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 264
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 1 cut(s) 841
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 384
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 604
CviAII CATG 6 cut(s) 238, 335, 397, 487, 614, 640
CviJI RGCY 8 cut(s) 111, 120, 126, 132, 229, 292, 584, 793
CviKI_1 RGCY 8 cut(s) 111, 120, 126, 132, 229, 292, 584, 793
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 3 cut(s) 264, 350, 794
DpnI GATC 6 cut(s) 6, 204, 330, 348, 359, 473
DpnII GATC 6 cut(s) 4, 202, 328, 346, 357, 471
DrdI GACNNNNNNGTC 3 cut(s) 80, 98, 482
DseDI GACNNNNNNGTC 3 cut(s) 80, 98, 482
EaeI YGGCCR 1 cut(s) 124
EagI CGGCCG 1 cut(s) 124
Eam1104I CTCTTC 2 cut(s) 690, 744
EarI CTCTTC 2 cut(s) 690, 744
EclXI CGGCCG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 384
Eco52I CGGCCG 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 78
Eco81I CCTNAGG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 214
FaeI CATG 6 cut(s) 241, 338, 400, 490, 617, 643
FalI AAGNNNNNCTT 2 cut(s) 888, 920
FaqI GGGAC 3 cut(s) 38, 68, 370
FatI CATG 6 cut(s) 237, 334, 396, 486, 613, 639
FauI CCCGC 2 cut(s) 371, 395
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 3 cut(s) 127, 130, 599
FokI GGATG 1 cut(s) 848
Fsp4HI GCNGC 3 cut(s) 127, 130, 599
GlaI GCGC 1 cut(s) 184
GluI GCNGC 3 cut(s) 127, 130, 599
GsaI CCCAGC 1 cut(s) 325
GsuI CTGGAG 2 cut(s) 100, 216
HaeIII GGCC 1 cut(s) 126
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 6 cut(s) 241, 338, 400, 490, 617, 643
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 2 cut(s) 610, 908
HpaII CCGG 1 cut(s) 123
HphI GGTGA 5 cut(s) 385, 589, 818, 877, 905
Hpy166II GTNNAC 2 cut(s) 145, 223
Hpy188I TCNGA 3 cut(s) 151, 357, 783
Hpy188III TCNNGA 7 cut(s) 233, 248, 263, 455, 614, 905, 922
Hpy8I GTNNAC 2 cut(s) 145, 223
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 394, 415, 458, 543, 574
HpyCH4III ACNGT 1 cut(s) 916
HpyCH4V TGCA 2 cut(s) 490, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 126
HpyF3I CTNAG 3 cut(s) 264, 350, 794
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 6 cut(s) 241, 338, 400, 490, 617, 643
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 6 cut(s) 4, 202, 328, 346, 357, 471
LmnI GCTCC 2 cut(s) 125, 854
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 1 cut(s) 640
MalI GATC 6 cut(s) 6, 204, 330, 348, 359, 473
MbiI CCGCTC 1 cut(s) 598
MboI GATC 6 cut(s) 4, 202, 328, 346, 357, 471
MboII GAAGA 9 cut(s) 94, 208, 421, 574, 701, 704, 707, 761, 908
MflI RGATCY 3 cut(s) 4, 328, 357
MluCI AATT 2 cut(s) 214, 275
MmeI TCCRAC 2 cut(s) 645, 712
MroXI GAANNNNTTC 1 cut(s) 900
MseI TTAA 2 cut(s) 653, 771
MslI CAYNNNNRTG 2 cut(s) 395, 491
MspI CCGG 1 cut(s) 123
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 117, 126
NdeII GATC 6 cut(s) 4, 202, 328, 346, 357, 471
NlaIII CATG 6 cut(s) 241, 338, 400, 490, 617, 643
NlaIV GGNNCC 3 cut(s) 6, 330, 386
PagI TCATGA 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 900
PfeI GAWTC 2 cut(s) 610, 908
PkrI GCNGC 3 cut(s) 128, 131, 600
PspFI CCCAGC 1 cut(s) 321
PspN4I GGNNCC 3 cut(s) 6, 330, 386
PspPI GGNCC 1 cut(s) 384
PsuI RGATCY 3 cut(s) 4, 328, 357
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
RseI CAYNNNNRTG 2 cut(s) 395, 491
SaqAI TTAA 2 cut(s) 653, 771
SatI GCNGC 3 cut(s) 127, 130, 599
Sau3AI GATC 6 cut(s) 4, 202, 328, 346, 357, 471
Sau96I GGNCC 1 cut(s) 384
SfaNI GCATC 1 cut(s) 640
SinI GGWCC 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 395, 491
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
Sse9I AATT 2 cut(s) 214, 275
SsiI CCGC 8 cut(s) 37, 127, 181, 364, 388, 556, 598, 637
TaaI ACNGT 1 cut(s) 916
TaqI TCGA 3 cut(s) 78, 249, 474
TasI AATT 2 cut(s) 214, 275
TatI WGTACW 1 cut(s) 603
TauI GCSGC 2 cut(s) 129, 601
TfiI GAWTC 2 cut(s) 610, 908
Tru1I TTAA 2 cut(s) 653, 771
Tru9I TTAA 2 cut(s) 653, 771
TseI GCWGC 1 cut(s) 129
TspDTI ATGAA 1 cut(s) 413
TspGWI ACGGA 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 384
XapI RAATTY 2 cut(s) 214, 275
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.